RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 ZNF219Q9P2Y4 722 aaPredicted RBP21.16■□□□□ 0.98
COL7A1-202ENST00000422991 DUOX1Q9NRD9 1551 aa21.15■□□□□ 0.98
COL7A1-202ENST00000422991 OLFM4Q6UX06 510 aa21.15■□□□□ 0.98
COL7A1-202ENST00000422991 LDHAL6AQ6ZMR3 332 aa21.15■□□□□ 0.98
COL7A1-202ENST00000422991 PA2G4Q9UQ80 394 aaKnown RBP21.15■□□□□ 0.98
COL7A1-202ENST00000422991 PCDHB15Q9Y5E8 787 aa21.15■□□□□ 0.98
COL7A1-202ENST00000422991 SOGA3Q5TF21 947 aa21.14■□□□□ 0.97
COL7A1-202ENST00000422991 CC2D2BQ6DHV5 1058 aa21.14■□□□□ 0.97
COL7A1-202ENST00000422991 PUS3Q9BZE2 481 aaKnown RBP21.14■□□□□ 0.97
COL7A1-202ENST00000422991 HMMRO75330 724 aa21.13■□□□□ 0.97
COL7A1-202ENST00000422991 NEFLP07196 543 aa21.13■□□□□ 0.97
COL7A1-202ENST00000422991 CCDC93Q567U6 631 aa21.13■□□□□ 0.97
COL7A1-202ENST00000422991 CNNM1Q9NRU3 951 aa21.13■□□□□ 0.97
COL7A1-202ENST00000422991 FBXO3Q9UK99 471 aa21.13■□□□□ 0.97
COL7A1-202ENST00000422991 EYA2O00167 538 aa21.12■□□□□ 0.97
COL7A1-202ENST00000422991 CIAO1O76071 339 aa21.12■□□□□ 0.97
COL7A1-202ENST00000422991 LRRC24Q50LG9 513 aa21.12■□□□□ 0.97
COL7A1-202ENST00000422991 SIL1Q9H173 461 aa21.12■□□□□ 0.97
COL7A1-202ENST00000422991 MINPP1Q9UNW1 487 aa21.12■□□□□ 0.97
COL7A1-202ENST00000422991 RIPOR2Q9Y4F9 1068 aa21.12■□□□□ 0.97
COL7A1-202ENST00000422991 ATG9AQ7Z3C6 839 aa21.11■□□□□ 0.97
COL7A1-202ENST00000422991 TMX4Q9H1E5 349 aaPredicted RBP21.11■□□□□ 0.97
COL7A1-202ENST00000422991 GPSM2P81274 684 aa21.1■□□□□ 0.97
COL7A1-202ENST00000422991 CHRNDQ07001 517 aa21.1■□□□□ 0.97
COL7A1-202ENST00000422991 GRIPAP1Q4V328 841 aa21.1■□□□□ 0.97
COL7A1-202ENST00000422991 NOP58Q9Y2X3 529 aaKnown RBP21.1■□□□□ 0.97
COL7A1-202ENST00000422991 XDHP47989 1333 aa21.09■□□□□ 0.97
COL7A1-202ENST00000422991 MROH5Q6ZUA9 1318 aa21.09■□□□□ 0.97
COL7A1-202ENST00000422991 RTKN2Q8IZC4 609 aa21.09■□□□□ 0.97
COL7A1-202ENST00000422991 PODXL2Q9NZ53 605 aa21.09■□□□□ 0.97
COL7A1-202ENST00000422991 NFKBIEO00221 500 aa21.08■□□□□ 0.97
COL7A1-202ENST00000422991 IL15P40933 162 aaPredicted RBP21.08■□□□□ 0.97
COL7A1-202ENST00000422991 MPNDQ8N594 471 aa21.08■□□□□ 0.97
COL7A1-202ENST00000422991 ANKRD2Q9GZV1 360 aa21.08■□□□□ 0.97
COL7A1-202ENST00000422991 LTBP3Q9NS15 1303 aa21.07■□□□□ 0.96
COL7A1-202ENST00000422991 ARAP2Q8WZ64 1704 aa21.07■□□□□ 0.96
COL7A1-202ENST00000422991 SURF6O75683 361 aaKnown RBP21.07■□□□□ 0.96
COL7A1-202ENST00000422991 METTL24Q5JXM2 366 aa21.07■□□□□ 0.96
COL7A1-202ENST00000422991 DPP8Q6V1X1 898 aaPredicted RBP21.07■□□□□ 0.96
COL7A1-202ENST00000422991 VGLL2Q8N8G2 317 aa21.07■□□□□ 0.96
COL7A1-202ENST00000422991 PSMD1Q99460 953 aa21.07■□□□□ 0.96
COL7A1-202ENST00000422991 ANKIB1Q9P2G1 1089 aa21.07■□□□□ 0.96
COL7A1-202ENST00000422991 NSFL1CQ9UNZ2 370 aaKnown RBP21.07■□□□□ 0.96
COL7A1-202ENST00000422991 SBF1O95248 1867 aa21.07■□□□□ 0.96
COL7A1-202ENST00000422991 FKBP4Q02790 459 aaKnown RBP eCLIP21.06■□□□□ 0.96
COL7A1-202ENST00000422991 G3BP1Q13283 466 aaKnown RBP eCLIP21.06■□□□□ 0.96
COL7A1-202ENST00000422991 HDAC1Q13547 482 aaPredicted RBP21.06■□□□□ 0.96
COL7A1-202ENST00000422991 ARHGAP27Q6ZUM4 889 aa21.06■□□□□ 0.96
COL7A1-202ENST00000422991 HELBQ8NG08 1087 aaPredicted RBP21.06■□□□□ 0.96
COL7A1-202ENST00000422991 RTFDC1Q9BY42 306 aaPredicted RBP21.06■□□□□ 0.96
COL7A1-202ENST00000422991 EXOC6BQ9Y2D4 811 aa21.06■□□□□ 0.96
COL7A1-202ENST00000422991 CCDC88AQ3V6T2 1871 aa21.06■□□□□ 0.96
COL7A1-202ENST00000422991 TAF5LO75529 589 aa21.05■□□□□ 0.96
COL7A1-202ENST00000422991 TAOK3Q9H2K8 898 aa21.05■□□□□ 0.96
COL7A1-202ENST00000422991 GGA1Q9UJY5 639 aa21.05■□□□□ 0.96
COL7A1-202ENST00000422991 UFL1O94874 794 aa21.04■□□□□ 0.96
COL7A1-202ENST00000422991 RASSF7Q02833 373 aa21.04■□□□□ 0.96
COL7A1-202ENST00000422991 OS9Q13438 667 aaPredicted RBP21.04■□□□□ 0.96
COL7A1-202ENST00000422991 TBC1D16Q8TBP0 767 aa21.04■□□□□ 0.96
COL7A1-202ENST00000422991 POLLQ9UGP5 575 aa21.04■□□□□ 0.96
COL7A1-202ENST00000422991 DICER1Q9UPY3 1922 aaKnown RBP21.04■□□□□ 0.96
COL7A1-202ENST00000422991 SASH1O94885 1247 aa21.03■□□□□ 0.96
COL7A1-202ENST00000422991 PDE8BO95263 885 aa21.03■□□□□ 0.96
COL7A1-202ENST00000422991 ATP2B4P23634 1241 aa21.03■□□□□ 0.96
COL7A1-202ENST00000422991 HSP90AB4PQ58FF6 505 aa21.03■□□□□ 0.96
COL7A1-202ENST00000422991 SUPT20HQ8NEM7 779 aa21.03■□□□□ 0.96
COL7A1-202ENST00000422991 CEP126Q9P2H0 1117 aa21.03■□□□□ 0.96
COL7A1-202ENST00000422991 LEMD3Q9Y2U8 911 aa21.03■□□□□ 0.96
COL7A1-202ENST00000422991 TIAM2Q8IVF5 1701 aa21.02■□□□□ 0.96
COL7A1-202ENST00000422991 WTIPA6NIX2 430 aaPredicted RBP21.02■□□□□ 0.96
COL7A1-202ENST00000422991 TFCP2Q12800 502 aa21.02■□□□□ 0.96
COL7A1-202ENST00000422991 ERC1Q8IUD2 1116 aa21.02■□□□□ 0.96
COL7A1-202ENST00000422991 DCTPP1Q9H773 170 aa21.02■□□□□ 0.96
COL7A1-202ENST00000422991 ZNF609O15014 1411 aa21.02■□□□□ 0.96
COL7A1-202ENST00000422991 ZNF804BA4D1E1 1349 aa21.02■□□□□ 0.95
COL7A1-202ENST00000422991 MED23Q9ULK4 1368 aa21.01■□□□□ 0.95
COL7A1-202ENST00000422991 C6orf229H3BNL8 230 aa21.01■□□□□ 0.95
COL7A1-202ENST00000422991 SNAP23O00161 211 aa21.01■□□□□ 0.95
COL7A1-202ENST00000422991 KCNJ4P48050 445 aa21.01■□□□□ 0.95
COL7A1-202ENST00000422991 PUM3Q15397 648 aaKnown RBP21.01■□□□□ 0.95
COL7A1-202ENST00000422991 GPR101Q96P66 508 aaPredicted RBP21.01■□□□□ 0.95
COL7A1-202ENST00000422991 RWDD1Q9H446 243 aaPredicted RBP21.01■□□□□ 0.95
COL7A1-202ENST00000422991 ZNF277Q9NRM2 450 aaPredicted RBP21.01■□□□□ 0.95
COL7A1-202ENST00000422991 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP21.01■□□□□ 0.95
COL7A1-202ENST00000422991 COL4A5P29400 1685 aa21.01■□□□□ 0.95
COL7A1-202ENST00000422991 RAB11FIP3O75154 756 aa21■□□□□ 0.95
COL7A1-202ENST00000422991 FGFR2P21802 821 aa21■□□□□ 0.95
COL7A1-202ENST00000422991 PRELPP51888 382 aa21■□□□□ 0.95
COL7A1-202ENST00000422991 UBE4AQ14139 1066 aa21■□□□□ 0.95
COL7A1-202ENST00000422991 IRS2Q9Y4H2 1338 aa21■□□□□ 0.95
COL7A1-202ENST00000422991 IGHDP01880 384 aa20.99■□□□□ 0.95
COL7A1-202ENST00000422991 ERICH6BQ5W0A0 696 aa20.99■□□□□ 0.95
COL7A1-202ENST00000422991 EYA3Q99504 573 aa20.99■□□□□ 0.95
COL7A1-202ENST00000422991 KLRK1P26718 216 aa20.98■□□□□ 0.95
COL7A1-202ENST00000422991 IARSP41252 1262 aaKnown RBP20.98■□□□□ 0.95
COL7A1-202ENST00000422991 KIAA2012Q0VF49 1180 aa20.98■□□□□ 0.95
COL7A1-202ENST00000422991 ATP2B3Q16720 1220 aa20.98■□□□□ 0.95
COL7A1-202ENST00000422991 C15orf52Q6ZUT6 534 aaKnown RBP20.98■□□□□ 0.95
COL7A1-202ENST00000422991 RHPN1Q8TCX5 695 aa20.98■□□□□ 0.95
COL7A1-202ENST00000422991 KIF1BPQ96EK5 621 aa20.98■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms