RNA–Protein interactions for RNA: ENST00000409531.5

TSPAN4-208, Transcript of tetraspanin 4, humanhuman

TSL 5 BASIC

Gene TSPAN4, Length 1,339 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-208ENST00000409531 SNED1Q8TER0 1413 aa20.55■□□□□ 0.88
TSPAN4-208ENST00000409531 GLTPD2A6NH11 291 aa20.54■□□□□ 0.88
TSPAN4-208ENST00000409531 SRGAP3O43295 1099 aa20.54■□□□□ 0.88
TSPAN4-208ENST00000409531 IARSP41252 1262 aaKnown RBP20.54■□□□□ 0.88
TSPAN4-208ENST00000409531 IFIT5Q13325 482 aaKnown RBP20.54■□□□□ 0.88
TSPAN4-208ENST00000409531 CCDC57Q2TAC2 916 aa20.54■□□□□ 0.88
TSPAN4-208ENST00000409531 DPY19L2Q6NUT2 758 aa20.54■□□□□ 0.88
TSPAN4-208ENST00000409531 MPNDQ8N594 471 aa20.54■□□□□ 0.88
TSPAN4-208ENST00000409531 SEC31BQ9NQW1 1179 aa20.54■□□□□ 0.88
TSPAN4-208ENST00000409531 PCDHB15Q9Y5E8 787 aa20.54■□□□□ 0.88
TSPAN4-208ENST00000409531 SLC51AQ86UW1 340 aa20.53■□□□□ 0.88
TSPAN4-208ENST00000409531 CCDC88AQ3V6T2 1871 aa20.53■□□□□ 0.88
TSPAN4-208ENST00000409531 ANKRD18BA2A2Z9 1011 aa20.53■□□□□ 0.88
TSPAN4-208ENST00000409531 FAM161AQ3B820 660 aa20.53■□□□□ 0.88
TSPAN4-208ENST00000409531 DPP8Q6V1X1 898 aaPredicted RBP20.53■□□□□ 0.88
TSPAN4-208ENST00000409531 SUPT20HQ8NEM7 779 aa20.53■□□□□ 0.88
TSPAN4-208ENST00000409531 SSH3Q8TE77 659 aa20.53■□□□□ 0.88
TSPAN4-208ENST00000409531 CCDC85AQ96PX6 553 aaPredicted RBP20.53■□□□□ 0.88
TSPAN4-208ENST00000409531 VPS33BQ9H267 617 aa20.53■□□□□ 0.88
TSPAN4-208ENST00000409531 GREM2Q9H772 168 aa20.53■□□□□ 0.88
TSPAN4-208ENST00000409531 PNMA6EA0A0J9YXQ4 647 aa20.52■□□□□ 0.87
TSPAN4-208ENST00000409531 ITGA6P23229 1130 aa20.52■□□□□ 0.87
TSPAN4-208ENST00000409531 POLA2Q14181 598 aa20.52■□□□□ 0.87
TSPAN4-208ENST00000409531 CDC5LQ99459 802 aaKnown RBP20.52■□□□□ 0.87
TSPAN4-208ENST00000409531 RTFDC1Q9BY42 306 aaPredicted RBP20.52■□□□□ 0.87
TSPAN4-208ENST00000409531 RWDD1Q9H446 243 aaPredicted RBP20.52■□□□□ 0.87
TSPAN4-208ENST00000409531 HDAC1Q13547 482 aaPredicted RBP20.51■□□□□ 0.87
TSPAN4-208ENST00000409531 TAF7LQ5H9L4 462 aa20.51■□□□□ 0.87
TSPAN4-208ENST00000409531 JDP2Q8WYK2 163 aa20.51■□□□□ 0.87
TSPAN4-208ENST00000409531 NMRK2Q9NPI5 230 aa20.51■□□□□ 0.87
TSPAN4-208ENST00000409531 PPP4R2Q9NY27 417 aa20.51■□□□□ 0.87
TSPAN4-208ENST00000409531 KIF3CO14782 793 aa20.5■□□□□ 0.87
TSPAN4-208ENST00000409531 SIRT2Q8IXJ6 389 aa20.5■□□□□ 0.87
TSPAN4-208ENST00000409531 NSFL1CQ9UNZ2 370 aaKnown RBP20.5■□□□□ 0.87
TSPAN4-208ENST00000409531 TAF1P21675 1872 aa20.49■□□□□ 0.87
TSPAN4-208ENST00000409531 ANKRD18AQ8IVF6 992 aa20.49■□□□□ 0.87
TSPAN4-208ENST00000409531 LARGE2Q8N3Y3 721 aa20.49■□□□□ 0.87
TSPAN4-208ENST00000409531 RRAGCQ9HB90 399 aa20.49■□□□□ 0.87
TSPAN4-208ENST00000409531 DICER1Q9UPY3 1922 aaKnown RBP20.48■□□□□ 0.87
TSPAN4-208ENST00000409531 SPEF2Q9C093 1822 aa20.48■□□□□ 0.87
TSPAN4-208ENST00000409531 FZD9O00144 591 aa20.48■□□□□ 0.87
TSPAN4-208ENST00000409531 IGHMBP2P38935 993 aaKnown RBP20.48■□□□□ 0.87
TSPAN4-208ENST00000409531 CCDC136Q96JN2 1154 aa20.48■□□□□ 0.87
TSPAN4-208ENST00000409531 COPRSQ9NQ92 184 aa20.48■□□□□ 0.87
TSPAN4-208ENST00000409531 FBXO3Q9UK99 471 aa20.48■□□□□ 0.87
TSPAN4-208ENST00000409531 PPIP5K2O43314 1243 aa20.47■□□□□ 0.87
TSPAN4-208ENST00000409531 RFX5P48382 616 aaPredicted RBP20.47■□□□□ 0.87
TSPAN4-208ENST00000409531 PTPN12Q05209 780 aaKnown RBP20.47■□□□□ 0.87
TSPAN4-208ENST00000409531 HSP90AB4PQ58FF6 505 aa20.47■□□□□ 0.87
TSPAN4-208ENST00000409531 DDNO94850 711 aaPredicted RBP20.46■□□□□ 0.87
TSPAN4-208ENST00000409531 VEGFAP15692 232 aaPredicted RBP20.46■□□□□ 0.87
TSPAN4-208ENST00000409531 GPSM2P81274 684 aa20.46■□□□□ 0.87
TSPAN4-208ENST00000409531 MPHOSPH8Q99549 860 aa20.46■□□□□ 0.87
TSPAN4-208ENST00000409531 BSDC1Q9NW68 430 aaPredicted RBP20.46■□□□□ 0.87
TSPAN4-208ENST00000409531 KIAA2012Q0VF49 1180 aa20.45■□□□□ 0.86
TSPAN4-208ENST00000409531 AOC3Q16853 763 aa20.45■□□□□ 0.86
TSPAN4-208ENST00000409531 PODXL2Q9NZ53 605 aa20.45■□□□□ 0.86
TSPAN4-208ENST00000409531 C6orf229H3BNL8 230 aa20.44■□□□□ 0.86
TSPAN4-208ENST00000409531 SURF6O75683 361 aaKnown RBP20.44■□□□□ 0.86
TSPAN4-208ENST00000409531 TOMM70O94826 608 aa20.44■□□□□ 0.86
TSPAN4-208ENST00000409531 EIF6P56537 245 aaKnown RBP20.44■□□□□ 0.86
TSPAN4-208ENST00000409531 G3BP1Q13283 466 aaKnown RBP eCLIP20.44■□□□□ 0.86
TSPAN4-208ENST00000409531 LDHAL6AQ6ZMR3 332 aa20.44■□□□□ 0.86
TSPAN4-208ENST00000409531 NIM1KQ8IY84 436 aa20.44■□□□□ 0.86
TSPAN4-208ENST00000409531 GCC1Q96CN9 775 aa20.44■□□□□ 0.86
TSPAN4-208ENST00000409531 ANKIB1Q9P2G1 1089 aa20.44■□□□□ 0.86
TSPAN4-208ENST00000409531 POLLQ9UGP5 575 aa20.44■□□□□ 0.86
TSPAN4-208ENST00000409531 NOP58Q9Y2X3 529 aaKnown RBP20.44■□□□□ 0.86
TSPAN4-208ENST00000409531 GTF3C3Q9Y5Q9 886 aa20.44■□□□□ 0.86
TSPAN4-208ENST00000409531 CIAO1O76071 339 aa20.43■□□□□ 0.86
TSPAN4-208ENST00000409531 WASHC4Q2M389 1173 aa20.43■□□□□ 0.86
TSPAN4-208ENST00000409531 C16orf71Q8IYS4 520 aaPredicted RBP20.43■□□□□ 0.86
TSPAN4-208ENST00000409531 KLHDC4Q8TBB5 520 aa20.43■□□□□ 0.86
TSPAN4-208ENST00000409531 ZNF594Q96JF6 807 aaPredicted RBP20.43■□□□□ 0.86
TSPAN4-208ENST00000409531 DCTPP1Q9H773 170 aa20.43■□□□□ 0.86
TSPAN4-208ENST00000409531 CNNM1Q9NRU3 951 aa20.43■□□□□ 0.86
TSPAN4-208ENST00000409531 PA2G4Q9UQ80 394 aaKnown RBP20.43■□□□□ 0.86
TSPAN4-208ENST00000409531 COL4A1P02462 1669 aa20.43■□□□□ 0.86
TSPAN4-208ENST00000409531 TIAM2Q8IVF5 1701 aa20.43■□□□□ 0.86
TSPAN4-208ENST00000409531 POTECB2RU33 542 aa20.42■□□□□ 0.86
TSPAN4-208ENST00000409531 EYA2O00167 538 aa20.42■□□□□ 0.86
TSPAN4-208ENST00000409531 OS9Q13438 667 aaPredicted RBP20.42■□□□□ 0.86
TSPAN4-208ENST00000409531 ERC1Q8IUD2 1116 aa20.42■□□□□ 0.86
TSPAN4-208ENST00000409531 TBC1D16Q8TBP0 767 aa20.42■□□□□ 0.86
TSPAN4-208ENST00000409531 EYA3Q99504 573 aa20.42■□□□□ 0.86
TSPAN4-208ENST00000409531 SIL1Q9H173 461 aa20.42■□□□□ 0.86
TSPAN4-208ENST00000409531 ZNRF3Q9ULT6 936 aa20.42■□□□□ 0.86
TSPAN4-208ENST00000409531 MINPP1Q9UNW1 487 aa20.42■□□□□ 0.86
TSPAN4-208ENST00000409531 ZNF541Q9H0D2 1346 aa20.42■□□□□ 0.86
TSPAN4-208ENST00000409531 RAB11FIP3O75154 756 aa20.41■□□□□ 0.86
TSPAN4-208ENST00000409531 IGHDP01880 384 aa20.41■□□□□ 0.86
TSPAN4-208ENST00000409531 IL15P40933 162 aaPredicted RBP20.41■□□□□ 0.86
TSPAN4-208ENST00000409531 GPC2Q8N158 579 aa20.41■□□□□ 0.86
TSPAN4-208ENST00000409531 L3MBTL3Q96JM7 780 aaPredicted RBP20.4■□□□□ 0.86
TSPAN4-208ENST00000409531 ZC3H12CQ9C0D7 883 aaKnown RBP20.4■□□□□ 0.86
TSPAN4-208ENST00000409531 GGA1Q9UJY5 639 aa20.4■□□□□ 0.86
TSPAN4-208ENST00000409531 EXOC6BQ9Y2D4 811 aa20.4■□□□□ 0.86
TSPAN4-208ENST00000409531 XDHP47989 1333 aa20.4■□□□□ 0.86
TSPAN4-208ENST00000409531 LRRC37AA6NMS7 1700 aa20.4■□□□□ 0.86
TSPAN4-208ENST00000409531 COL4A5P29400 1685 aa20.39■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms