RNA–Protein interactions for RNA: ENST00000396386.6

CBX3-202, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 1,857 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-202ENST00000396386 ZNF34Q8IZ26 560 aa17.92■□□□□ 0.46
CBX3-202ENST00000396386 TTLL11Q8NHH1 800 aa17.92■□□□□ 0.46
CBX3-202ENST00000396386 SMARCC1Q92922 1105 aaPredicted RBP17.92■□□□□ 0.46
CBX3-202ENST00000396386 GZF1Q9H116 711 aaPredicted RBP17.92■□□□□ 0.46
CBX3-202ENST00000396386 ANKRD18BA2A2Z9 1011 aa17.92■□□□□ 0.46
CBX3-202ENST00000396386 PDE8AO60658 829 aa17.92■□□□□ 0.46
CBX3-202ENST00000396386 CPA1P15085 419 aa17.92■□□□□ 0.46
CBX3-202ENST00000396386 MCMDC2Q4G0Z9 681 aa17.92■□□□□ 0.46
CBX3-202ENST00000396386 SYNE4Q8N205 404 aa17.92■□□□□ 0.46
CBX3-202ENST00000396386 BRD1O95696 1058 aa17.91■□□□□ 0.46
CBX3-202ENST00000396386 ITGA6P23229 1130 aa17.91■□□□□ 0.46
CBX3-202ENST00000396386 USPL1Q5W0Q7 1092 aa17.91■□□□□ 0.46
CBX3-202ENST00000396386 MCTP1Q6DN14 999 aa17.91■□□□□ 0.46
CBX3-202ENST00000396386 GREM2Q9H772 168 aa17.91■□□□□ 0.46
CBX3-202ENST00000396386 BCL9LQ86UU0 1499 aa17.91■□□□□ 0.46
CBX3-202ENST00000396386 ITPK1Q13572 414 aa17.9■□□□□ 0.46
CBX3-202ENST00000396386 VPS72Q15906 364 aa17.9■□□□□ 0.46
CBX3-202ENST00000396386 CCDC158Q5M9N0 1113 aa17.9■□□□□ 0.46
CBX3-202ENST00000396386 TTC39AQ5SRH9 613 aa17.9■□□□□ 0.46
CBX3-202ENST00000396386 L1TD1Q5T7N2 865 aaKnown RBP17.9■□□□□ 0.46
CBX3-202ENST00000396386 GORABQ5T7V8 394 aa17.9■□□□□ 0.46
CBX3-202ENST00000396386 ZSCAN31Q96LW9 406 aaPredicted RBP17.9■□□□□ 0.46
CBX3-202ENST00000396386 AK7Q96M32 723 aa17.9■□□□□ 0.46
CBX3-202ENST00000396386 U3KPZ7 1027 aaPredicted RBP17.9■□□□□ 0.46
CBX3-202ENST00000396386 SCN7AQ01118 1682 aa17.9■□□□□ 0.46
CBX3-202ENST00000396386 THSD7AQ9UPZ6 1657 aa17.9■□□□□ 0.46
CBX3-202ENST00000396386 METTL24Q5JXM2 366 aa17.9■□□□□ 0.46
CBX3-202ENST00000396386 XAGE2Q96GT9 111 aa17.9■□□□□ 0.46
CBX3-202ENST00000396386 SH2B1Q9NRF2 756 aaPredicted RBP17.9■□□□□ 0.46
CBX3-202ENST00000396386 HELLSQ9NRZ9 838 aa17.9■□□□□ 0.46
CBX3-202ENST00000396386 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.9■□□□□ 0.46
CBX3-202ENST00000396386 LAMA4Q16363 1823 aa17.9■□□□□ 0.46
CBX3-202ENST00000396386 NHSQ6T4R5 1651 aa17.89■□□□□ 0.46
CBX3-202ENST00000396386 KRT32Q14532 448 aa17.89■□□□□ 0.45
CBX3-202ENST00000396386 FAM98CQ17RN3 349 aaKnown RBP17.89■□□□□ 0.45
CBX3-202ENST00000396386 TSGA10IPQ3SY00 556 aa17.89■□□□□ 0.45
CBX3-202ENST00000396386 BLOC1S2Q6QNY1 142 aa17.89■□□□□ 0.45
CBX3-202ENST00000396386 CCDC129Q6ZRS4 1044 aa17.89■□□□□ 0.45
CBX3-202ENST00000396386 C8orf37Q96NL8 207 aa17.89■□□□□ 0.45
CBX3-202ENST00000396386 ADORA1P30542 326 aa17.88■□□□□ 0.45
CBX3-202ENST00000396386 ATP2B3Q16720 1220 aa17.88■□□□□ 0.45
CBX3-202ENST00000396386 LRRFIP1Q32MZ4 808 aaKnown RBP17.88■□□□□ 0.45
CBX3-202ENST00000396386 LDHAL6AQ6ZMR3 332 aa17.88■□□□□ 0.45
CBX3-202ENST00000396386 CNNM1Q9NRU3 951 aa17.88■□□□□ 0.45
CBX3-202ENST00000396386 RIPOR2Q9Y4F9 1068 aa17.88■□□□□ 0.45
CBX3-202ENST00000396386 CASZ1Q86V15 1759 aa17.88■□□□□ 0.45
CBX3-202ENST00000396386 BTAF1O14981 1849 aa17.88■□□□□ 0.45
CBX3-202ENST00000396386 CAMTA2O94983 1202 aa17.88■□□□□ 0.45
CBX3-202ENST00000396386 ZMYM1Q5SVZ6 1142 aa17.88■□□□□ 0.45
CBX3-202ENST00000396386 NGLY1Q96IV0 654 aa17.88■□□□□ 0.45
CBX3-202ENST00000396386 SEC62Q99442 399 aaKnown RBP17.88■□□□□ 0.45
CBX3-202ENST00000396386 WDR33Q9C0J8 1336 aaKnown RBP17.88■□□□□ 0.45
CBX3-202ENST00000396386 AKAP11Q9UKA4 1901 aa17.87■□□□□ 0.45
CBX3-202ENST00000396386 GOLGA6L3A6NEY3 463 aa17.87■□□□□ 0.45
CBX3-202ENST00000396386 LARGE1O95461 756 aa17.87■□□□□ 0.45
CBX3-202ENST00000396386 CHGBP05060 677 aa17.87■□□□□ 0.45
CBX3-202ENST00000396386 RPS6KB1P23443 525 aa17.87■□□□□ 0.45
CBX3-202ENST00000396386 ANKRD1Q15327 319 aa17.87■□□□□ 0.45
CBX3-202ENST00000396386 KLHL40Q2TBA0 621 aa17.87■□□□□ 0.45
CBX3-202ENST00000396386 PARP10Q53GL7 1025 aa17.87■□□□□ 0.45
CBX3-202ENST00000396386 RNF113AO15541 343 aaKnown RBP17.86■□□□□ 0.45
CBX3-202ENST00000396386 SMC3Q9UQE7 1217 aa17.86■□□□□ 0.45
CBX3-202ENST00000396386 DDX49Q9Y6V7 483 aaKnown RBP17.86■□□□□ 0.45
CBX3-202ENST00000396386 FSD2A1L4K1 749 aa17.86■□□□□ 0.45
CBX3-202ENST00000396386 FOXD4L5Q5VV16 416 aaPredicted RBP17.86■□□□□ 0.45
CBX3-202ENST00000396386 SUSD4Q5VX71 490 aa17.86■□□□□ 0.45
CBX3-202ENST00000396386 FOXD4L4Q8WXT5 416 aaPredicted RBP17.86■□□□□ 0.45
CBX3-202ENST00000396386 LARP6Q9BRS8 491 aaKnown RBP17.86■□□□□ 0.45
CBX3-202ENST00000396386 UTP14AQ9BVJ6 771 aaKnown RBP17.86■□□□□ 0.45
CBX3-202ENST00000396386 ALDH8A1Q9H2A2 487 aaPredicted RBP17.86■□□□□ 0.45
CBX3-202ENST00000396386 LMBRD1Q9NUN5 540 aa17.86■□□□□ 0.45
CBX3-202ENST00000396386 MAST3O60307 1309 aa17.85■□□□□ 0.45
CBX3-202ENST00000396386 KCNQ2O43526 872 aa17.85■□□□□ 0.45
CBX3-202ENST00000396386 POTEAQ6S8J7 498 aa17.85■□□□□ 0.45
CBX3-202ENST00000396386 CCDC83Q8IWF9 413 aa17.85■□□□□ 0.45
CBX3-202ENST00000396386 VGLL2Q8N8G2 317 aa17.85■□□□□ 0.45
CBX3-202ENST00000396386 DSCC1Q9BVC3 393 aa17.85■□□□□ 0.45
CBX3-202ENST00000396386 ISY1Q9ULR0 285 aaKnown RBP17.85■□□□□ 0.45
CBX3-202ENST00000396386 TAF6LQ9Y6J9 622 aa17.85■□□□□ 0.45
CBX3-202ENST00000396386 FKBP4Q02790 459 aaKnown RBP eCLIP17.84■□□□□ 0.45
CBX3-202ENST00000396386 ZNF652Q9Y2D9 606 aa17.84■□□□□ 0.45
CBX3-202ENST00000396386 SPATA31A6Q5VVP1 1343 aa17.84■□□□□ 0.45
CBX3-202ENST00000396386 ZFYP08048 801 aaPredicted RBP17.84■□□□□ 0.45
CBX3-202ENST00000396386 HSP90B1P14625 803 aaKnown RBP17.84■□□□□ 0.45
CBX3-202ENST00000396386 RTL9Q8NET4 1388 aa17.83■□□□□ 0.45
CBX3-202ENST00000396386 MROH5Q6ZUA9 1318 aa17.83■□□□□ 0.44
CBX3-202ENST00000396386 FNBP4Q8N3X1 1017 aaPredicted RBP17.83■□□□□ 0.44
CBX3-202ENST00000396386 A0A1B0GUL6 1792 aa17.83■□□□□ 0.44
CBX3-202ENST00000396386 PDE8BO95263 885 aa17.82■□□□□ 0.44
CBX3-202ENST00000396386 ME3Q16798 604 aa17.82■□□□□ 0.44
CBX3-202ENST00000396386 ZNF512BQ96KM6 892 aaPredicted RBP17.82■□□□□ 0.44
CBX3-202ENST00000396386 TPCN1Q9ULQ1 816 aa17.82■□□□□ 0.44
CBX3-202ENST00000396386 DOCK2Q92608 1830 aa17.82■□□□□ 0.44
CBX3-202ENST00000396386 NTSR2O95665 410 aa17.82■□□□□ 0.44
CBX3-202ENST00000396386 CYP21A2P08686 494 aa17.82■□□□□ 0.44
CBX3-202ENST00000396386 HCLS1P14317 486 aaPredicted RBP17.82■□□□□ 0.44
CBX3-202ENST00000396386 SCARF1Q14162 830 aa17.82■□□□□ 0.44
CBX3-202ENST00000396386 NEK1Q96PY6 1258 aa17.82■□□□□ 0.44
CBX3-202ENST00000396386 NIP7Q9Y221 180 aaKnown RBP eCLIP17.82■□□□□ 0.44
CBX3-202ENST00000396386 CNTNAP4Q9C0A0 1308 aa17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 91.4 ms