RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 SMAP1Q8IYB5 467 aaPredicted RBP14.99□□□□□ -0.01
SHMT1-205ENST00000395684 RABL6Q3YEC7 729 aaPredicted RBP14.98□□□□□ -0.01
SHMT1-205ENST00000395684 ZSCAN25Q6NSZ9 544 aa14.98□□□□□ -0.01
SHMT1-205ENST00000395684 HAUS7Q99871 368 aa14.98□□□□□ -0.01
SHMT1-205ENST00000395684 ZSCAN16Q9H4T2 348 aaPredicted RBP14.98□□□□□ -0.01
SHMT1-205ENST00000395684 KDM6AO15550 1401 aaPredicted RBP14.98□□□□□ -0.01
SHMT1-205ENST00000395684 ADAMTS7Q9UKP4 1686 aa14.98□□□□□ -0.01
SHMT1-205ENST00000395684 SLFNL1Q499Z3 407 aa14.98□□□□□ -0.01
SHMT1-205ENST00000395684 SMARCC2Q8TAQ2 1214 aa14.98□□□□□ -0.01
SHMT1-205ENST00000395684 PRDM10Q9NQV6 1147 aa14.98□□□□□ -0.01
SHMT1-205ENST00000395684 ERBB3P21860 1342 aa14.97□□□□□ -0.01
SHMT1-205ENST00000395684 CTIFO43310 598 aaKnown RBP14.97□□□□□ -0.01
SHMT1-205ENST00000395684 PPP4R3BQ5MIZ7 849 aa14.97□□□□□ -0.01
SHMT1-205ENST00000395684 FTOQ9C0B1 505 aaKnown RBP eCLIP14.97□□□□□ -0.01
SHMT1-205ENST00000395684 CFAP45Q9UL16 551 aa14.97□□□□□ -0.01
SHMT1-205ENST00000395684 ATP5J2-PTCD1G3V325 749 aa14.97□□□□□ -0.01
SHMT1-205ENST00000395684 PTCD1O75127 700 aaKnown RBP14.97□□□□□ -0.01
SHMT1-205ENST00000395684 CCDC144BQ3MJ40 725 aa14.97□□□□□ -0.01
SHMT1-205ENST00000395684 ARHGAP30Q7Z6I6 1101 aaPredicted RBP14.97□□□□□ -0.01
SHMT1-205ENST00000395684 CCDC144CPQ8IYA2 1237 aa14.97□□□□□ -0.01
SHMT1-205ENST00000395684 CCDC9Q9Y3X0 531 aaKnown RBP14.97□□□□□ -0.01
SHMT1-205ENST00000395684 C5P01031 1676 aa14.97□□□□□ -0.01
SHMT1-205ENST00000395684 CTDNEP1O95476 244 aa14.96□□□□□ -0.01
SHMT1-205ENST00000395684 IQCB1Q15051 598 aa14.96□□□□□ -0.01
SHMT1-205ENST00000395684 ATP2B3Q16720 1220 aa14.96□□□□□ -0.01
SHMT1-205ENST00000395684 NSUN7Q8NE18 718 aaKnown RBP14.96□□□□□ -0.01
SHMT1-205ENST00000395684 CACTINQ8WUQ7 758 aaKnown RBP14.96□□□□□ -0.01
SHMT1-205ENST00000395684 CAMTA1Q9Y6Y1 1673 aa14.96□□□□□ -0.01
SHMT1-205ENST00000395684 PFKFB2O60825 505 aa14.96□□□□□ -0.02
SHMT1-205ENST00000395684 PHKG2P15735 406 aa14.96□□□□□ -0.02
SHMT1-205ENST00000395684 FOSBP53539 338 aa14.96□□□□□ -0.02
SHMT1-205ENST00000395684 ZC3H6P61129 1189 aaKnown RBP14.96□□□□□ -0.02
SHMT1-205ENST00000395684 C16orf45Q96MC5 204 aaPredicted RBP14.96□□□□□ -0.02
SHMT1-205ENST00000395684 CLIP2Q9UDT6 1046 aa14.96□□□□□ -0.02
SHMT1-205ENST00000395684 A0A087WZG4 1122 aa14.95□□□□□ -0.02
SHMT1-205ENST00000395684 FGD1P98174 961 aa14.95□□□□□ -0.02
SHMT1-205ENST00000395684 C11orf57Q6ZUT1 292 aaPredicted RBP14.95□□□□□ -0.02
SHMT1-205ENST00000395684 RAPGEF4Q8WZA2 1011 aa14.95□□□□□ -0.02
SHMT1-205ENST00000395684 ANKRD7Q92527 254 aa14.95□□□□□ -0.02
SHMT1-205ENST00000395684 RFX7Q2KHR2 1363 aa14.95□□□□□ -0.02
SHMT1-205ENST00000395684 LMTK3Q96Q04 1460 aa14.95□□□□□ -0.02
SHMT1-205ENST00000395684 CBX1P83916 185 aa14.95□□□□□ -0.02
SHMT1-205ENST00000395684 DHX32Q7L7V1 743 aaKnown RBP14.95□□□□□ -0.02
SHMT1-205ENST00000395684 KBTBD3Q8NAB2 608 aa14.95□□□□□ -0.02
SHMT1-205ENST00000395684 LLPHQ9BRT6 129 aaKnown RBP14.95□□□□□ -0.02
SHMT1-205ENST00000395684 GOLPH3LQ9H4A5 285 aa14.95□□□□□ -0.02
SHMT1-205ENST00000395684 RCOR1Q9UKL0 485 aa14.95□□□□□ -0.02
SHMT1-205ENST00000395684 A0A0G2JLW4 131 aa14.94□□□□□ -0.02
SHMT1-205ENST00000395684 CASP7P55210 303 aa14.94□□□□□ -0.02
SHMT1-205ENST00000395684 APOBRQ0VD83 1088 aa14.94□□□□□ -0.02
SHMT1-205ENST00000395684 PDCL2Q8N4E4 241 aa14.94□□□□□ -0.02
SHMT1-205ENST00000395684 PPFIA3O75145 1194 aa14.94□□□□□ -0.02
SHMT1-205ENST00000395684 SNRPA1P09661 255 aaKnown RBP14.94□□□□□ -0.02
SHMT1-205ENST00000395684 SNW1Q13573 536 aaKnown RBP14.94□□□□□ -0.02
SHMT1-205ENST00000395684 KRT28Q7Z3Y7 464 aa14.94□□□□□ -0.02
SHMT1-205ENST00000395684 CCAR1Q8IX12 1150 aaKnown RBP14.94□□□□□ -0.02
SHMT1-205ENST00000395684 NLRP2Q9NX02 1062 aa14.94□□□□□ -0.02
SHMT1-205ENST00000395684 A0A087WWV3 80 aa14.93□□□□□ -0.02
SHMT1-205ENST00000395684 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.93□□□□□ -0.02
SHMT1-205ENST00000395684 PTPDC1A2A3K4 754 aa14.93□□□□□ -0.02
SHMT1-205ENST00000395684 CAVIN2O95810 425 aa14.93□□□□□ -0.02
SHMT1-205ENST00000395684 CCT2P78371 535 aaKnown RBP14.93□□□□□ -0.02
SHMT1-205ENST00000395684 EXOSC10Q01780 885 aaKnown RBP14.93□□□□□ -0.02
SHMT1-205ENST00000395684 NAA16Q6N069 864 aaPredicted RBP14.93□□□□□ -0.02
SHMT1-205ENST00000395684 LMBR1LQ6UX01 489 aa14.93□□□□□ -0.02
SHMT1-205ENST00000395684 USP28Q96RU2 1077 aa14.93□□□□□ -0.02
SHMT1-205ENST00000395684 SH3TC1Q8TE82 1336 aa14.93□□□□□ -0.02
SHMT1-205ENST00000395684 ZSCAN20P17040 1043 aaPredicted RBP14.93□□□□□ -0.02
SHMT1-205ENST00000395684 GOLIM4O00461 696 aa14.92□□□□□ -0.02
SHMT1-205ENST00000395684 HMGB1P09429 215 aaKnown RBP14.92□□□□□ -0.02
SHMT1-205ENST00000395684 TNNT1P13805 278 aa14.92□□□□□ -0.02
SHMT1-205ENST00000395684 ARID5BQ14865 1188 aa14.92□□□□□ -0.02
SHMT1-205ENST00000395684 NCOA5Q9HCD5 579 aaKnown RBP14.92□□□□□ -0.02
SHMT1-205ENST00000395684 CDC25BP30305 580 aa14.92□□□□□ -0.02
SHMT1-205ENST00000395684 TIMM10P62072 90 aa14.92□□□□□ -0.02
SHMT1-205ENST00000395684 SARM1Q6SZW1 724 aa14.92□□□□□ -0.02
SHMT1-205ENST00000395684 NEUROD6Q96NK8 337 aa14.92□□□□□ -0.02
SHMT1-205ENST00000395684 AGXT2Q9BYV1 514 aa14.92□□□□□ -0.02
SHMT1-205ENST00000395684 GOLGA6L19H0YKK7 550 aa14.91□□□□□ -0.02
SHMT1-205ENST00000395684 ATG9AQ7Z3C6 839 aa14.91□□□□□ -0.02
SHMT1-205ENST00000395684 ILDR1Q86SU0 546 aaPredicted RBP14.91□□□□□ -0.02
SHMT1-205ENST00000395684 TTC5Q8N0Z6 440 aa14.91□□□□□ -0.02
SHMT1-205ENST00000395684 ENGASEQ8NFI3 743 aa14.91□□□□□ -0.02
SHMT1-205ENST00000395684 RGPD5Q99666 1765 aa14.91□□□□□ -0.02
SHMT1-205ENST00000395684 TATP17735 454 aaPredicted RBP14.91□□□□□ -0.02
SHMT1-205ENST00000395684 FOXO4P98177 505 aa14.91□□□□□ -0.02
SHMT1-205ENST00000395684 NCBP1Q09161 790 aaKnown RBP14.91□□□□□ -0.02
SHMT1-205ENST00000395684 CHST3Q7LGC8 479 aa14.91□□□□□ -0.02
SHMT1-205ENST00000395684 LRRC8AQ8IWT6 810 aa14.91□□□□□ -0.02
SHMT1-205ENST00000395684 PAG1Q9NWQ8 432 aa14.91□□□□□ -0.02
SHMT1-205ENST00000395684 SALL1Q9NSC2 1324 aa14.91□□□□□ -0.02
SHMT1-205ENST00000395684 SPDYE4A6NLX3 237 aa14.9□□□□□ -0.02
SHMT1-205ENST00000395684 SMTNL1A8MU46 457 aa14.9□□□□□ -0.02
SHMT1-205ENST00000395684 E7EWF7 191 aa14.9□□□□□ -0.02
SHMT1-205ENST00000395684 CTAGE5O15320 804 aa14.9□□□□□ -0.02
SHMT1-205ENST00000395684 GUCY1B3Q02153 619 aa14.9□□□□□ -0.02
SHMT1-205ENST00000395684 STX1AQ16623 288 aa14.9□□□□□ -0.02
SHMT1-205ENST00000395684 IFNL2Q8IZJ0 200 aa14.9□□□□□ -0.02
SHMT1-205ENST00000395684 DSCC1Q9BVC3 393 aa14.9□□□□□ -0.02
SHMT1-205ENST00000395684 HELLSQ9NRZ9 838 aa14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms