RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 TBC1D9Q6ZT07 1266 aa32.79■■■□□ 2.84
MSX1-201ENST00000382723 AKAP2Q9Y2D5 859 aa32.79■■■□□ 2.84
MSX1-201ENST00000382723 ZNF609O15014 1411 aa32.78■■■□□ 2.84
MSX1-201ENST00000382723 LRP5O75197 1615 aa32.78■■■□□ 2.84
MSX1-201ENST00000382723 CCDC125Q86Z20 511 aa32.78■■■□□ 2.84
MSX1-201ENST00000382723 ANKRD18AQ8IVF6 992 aa32.78■■■□□ 2.84
MSX1-201ENST00000382723 HELBQ8NG08 1087 aaPredicted RBP32.77■■■□□ 2.84
MSX1-201ENST00000382723 MROH5Q6ZUA9 1318 aa32.76■■■□□ 2.83
MSX1-201ENST00000382723 COL4A1P02462 1669 aa32.76■■■□□ 2.83
MSX1-201ENST00000382723 TNRC6CQ9HCJ0 1690 aaKnown RBP32.76■■■□□ 2.83
MSX1-201ENST00000382723 VGLL2Q8N8G2 317 aa32.75■■■□□ 2.83
MSX1-201ENST00000382723 CELF1Q92879 486 aaKnown RBP32.75■■■□□ 2.83
MSX1-201ENST00000382723 MMP10P09238 476 aa32.75■■■□□ 2.83
MSX1-201ENST00000382723 PDE8BO95263 885 aa32.74■■■□□ 2.83
MSX1-201ENST00000382723 ATP2B3Q16720 1220 aa32.74■■■□□ 2.83
MSX1-201ENST00000382723 DDX46Q7L014 1031 aaKnown RBP32.74■■■□□ 2.83
MSX1-201ENST00000382723 BOLA2Q9H3K6 86 aa32.74■■■□□ 2.83
MSX1-201ENST00000382723 CASZ1Q86V15 1759 aa32.73■■■□□ 2.83
MSX1-201ENST00000382723 PARP3Q9Y6F1 533 aa32.72■■■□□ 2.83
MSX1-201ENST00000382723 TAF5LO75529 589 aa32.71■■■□□ 2.83
MSX1-201ENST00000382723 ADORA1P30542 326 aa32.71■■■□□ 2.83
MSX1-201ENST00000382723 MFAP1P55081 439 aaKnown RBP32.71■■■□□ 2.83
MSX1-201ENST00000382723 CNTROBQ8N137 903 aa32.71■■■□□ 2.83
MSX1-201ENST00000382723 ATP5JP18859 108 aa32.71■■■□□ 2.83
MSX1-201ENST00000382723 XAGE2Q96GT9 111 aa32.71■■■□□ 2.83
MSX1-201ENST00000382723 RPS8P62241 208 aaKnown RBP32.7■■■□□ 2.83
MSX1-201ENST00000382723 GORABQ5T7V8 394 aa32.7■■■□□ 2.83
MSX1-201ENST00000382723 CASC1Q6TDU7 716 aa32.7■■■□□ 2.83
MSX1-201ENST00000382723 BSDC1Q9NW68 430 aaPredicted RBP32.7■■■□□ 2.83
MSX1-201ENST00000382723 SPEF2Q9C093 1822 aa32.7■■■□□ 2.82
MSX1-201ENST00000382723 CHRNDQ07001 517 aa32.69■■■□□ 2.82
MSX1-201ENST00000382723 PUM3Q15397 648 aaKnown RBP32.68■■■□□ 2.82
MSX1-201ENST00000382723 RPGRQ92834 1020 aaKnown RBP32.68■■■□□ 2.82
MSX1-201ENST00000382723 PDGFDQ9GZP0 370 aaPredicted RBP32.68■■■□□ 2.82
MSX1-201ENST00000382723 TAF1P21675 1872 aa32.67■■■□□ 2.82
MSX1-201ENST00000382723 UPF2Q9HAU5 1272 aaKnown RBP32.67■■■□□ 2.82
MSX1-201ENST00000382723 SNAP23O00161 211 aa32.66■■■□□ 2.82
MSX1-201ENST00000382723 CRY2Q49AN0 593 aa32.65■■■□□ 2.82
MSX1-201ENST00000382723 CCDC158Q5M9N0 1113 aa32.65■■■□□ 2.82
MSX1-201ENST00000382723 LPIN2Q92539 896 aa32.65■■■□□ 2.82
MSX1-201ENST00000382723 MINPP1Q9UNW1 487 aa32.65■■■□□ 2.82
MSX1-201ENST00000382723 NDUFB9Q9Y6M9 179 aa32.65■■■□□ 2.82
MSX1-201ENST00000382723 FGFR2P21802 821 aa32.64■■■□□ 2.82
MSX1-201ENST00000382723 TTC39AQ5SRH9 613 aa32.64■■■□□ 2.82
MSX1-201ENST00000382723 EVI5LQ96CN4 794 aa32.64■■■□□ 2.82
MSX1-201ENST00000382723 DNAJC2Q99543 621 aaKnown RBP32.64■■■□□ 2.82
MSX1-201ENST00000382723 CHMLP26374 656 aa32.63■■■□□ 2.81
MSX1-201ENST00000382723 GRAPQ13588 217 aa32.63■■■□□ 2.81
MSX1-201ENST00000382723 GRAPLQ8TC17 118 aaPredicted RBP32.63■■■□□ 2.81
MSX1-201ENST00000382723 QSER1Q2KHR3 1735 aa32.63■■■□□ 2.81
MSX1-201ENST00000382723 EDC3Q96F86 508 aaKnown RBP32.63■■■□□ 2.81
MSX1-201ENST00000382723 SLC5A1P13866 664 aa32.62■■■□□ 2.81
MSX1-201ENST00000382723 BRIP1Q9BX63 1249 aa32.62■■■□□ 2.81
MSX1-201ENST00000382723 RBM17Q96I25 401 aaKnown RBP32.61■■■□□ 2.81
MSX1-201ENST00000382723 HAUS7Q99871 368 aa32.61■■■□□ 2.81
MSX1-201ENST00000382723 IFIT1P09914 478 aaKnown RBP32.61■■■□□ 2.81
MSX1-201ENST00000382723 NRXN2Q9P2S2 1712 aa32.59■■■□□ 2.81
MSX1-201ENST00000382723 KLRG2A4D1S0 409 aaPredicted RBP32.59■■■□□ 2.81
MSX1-201ENST00000382723 UPF1Q92900 1129 aaKnown RBP eCLIP32.57■■■□□ 2.81
MSX1-201ENST00000382723 FSD1Q9BTV5 496 aa32.57■■■□□ 2.81
MSX1-201ENST00000382723 WTIPA6NIX2 430 aaPredicted RBP32.57■■■□□ 2.8
MSX1-201ENST00000382723 ESYT1Q9BSJ8 1104 aa32.56■■■□□ 2.8
MSX1-201ENST00000382723 HOXA10P31260 410 aaPredicted RBP32.55■■■□□ 2.8
MSX1-201ENST00000382723 PDE6BP35913 854 aa32.55■■■□□ 2.8
MSX1-201ENST00000382723 PHKA1P46020 1223 aa32.55■■■□□ 2.8
MSX1-201ENST00000382723 CCDC102BQ68D86 513 aa32.55■■■□□ 2.8
MSX1-201ENST00000382723 SLC51AQ86UW1 340 aa32.55■■■□□ 2.8
MSX1-201ENST00000382723 PPIL4Q8WUA2 492 aaKnown RBP eCLIP32.55■■■□□ 2.8
MSX1-201ENST00000382723 SNRKQ9NRH2 765 aa32.55■■■□□ 2.8
MSX1-201ENST00000382723 GOLIM4O00461 696 aa32.55■■■□□ 2.8
MSX1-201ENST00000382723 SCARF1Q14162 830 aa32.55■■■□□ 2.8
MSX1-201ENST00000382723 ANKRD2Q9GZV1 360 aa32.55■■■□□ 2.8
MSX1-201ENST00000382723 PAG1Q9NWQ8 432 aa32.55■■■□□ 2.8
MSX1-201ENST00000382723 FKBP4Q02790 459 aaKnown RBP eCLIP32.54■■■□□ 2.8
MSX1-201ENST00000382723 C22orf23Q9BZE7 217 aa32.54■■■□□ 2.8
MSX1-201ENST00000382723 DIAPH3Q9NSV4 1193 aa32.54■■■□□ 2.8
MSX1-201ENST00000382723 TBC1D32Q96NH3 1257 aa32.53■■■□□ 2.8
MSX1-201ENST00000382723 AK9Q5TCS8 1911 aa32.53■■■□□ 2.8
MSX1-201ENST00000382723 EIF5BO60841 1220 aaKnown RBP32.53■■■□□ 2.8
MSX1-201ENST00000382723 ANP32AP39687 249 aaKnown RBP32.53■■■□□ 2.8
MSX1-201ENST00000382723 KCNJ4P48050 445 aa32.53■■■□□ 2.8
MSX1-201ENST00000382723 UBE4AQ14139 1066 aa32.53■■■□□ 2.8
MSX1-201ENST00000382723 CRAMP1Q96RY5 1269 aa32.53■■■□□ 2.8
MSX1-201ENST00000382723 ANKRD31Q8N7Z5 1873 aa32.53■■■□□ 2.8
MSX1-201ENST00000382723 CWC27Q6UX04 472 aaKnown RBP32.52■■■□□ 2.8
MSX1-201ENST00000382723 SRGNP10124 158 aa32.51■■■□□ 2.8
MSX1-201ENST00000382723 BCAMP50895 628 aa32.51■■■□□ 2.79
MSX1-201ENST00000382723 PI16Q6UXB8 463 aa32.51■■■□□ 2.79
MSX1-201ENST00000382723 SLC16A10Q8TF71 515 aa32.51■■■□□ 2.79
MSX1-201ENST00000382723 MCAMP43121 646 aa32.5■■■□□ 2.79
MSX1-201ENST00000382723 ZNF512BQ96KM6 892 aaPredicted RBP32.5■■■□□ 2.79
MSX1-201ENST00000382723 ANKIB1Q9P2G1 1089 aa32.5■■■□□ 2.79
MSX1-201ENST00000382723 BBOX1O75936 387 aa32.49■■■□□ 2.79
MSX1-201ENST00000382723 NPR1P16066 1061 aa32.49■■■□□ 2.79
MSX1-201ENST00000382723 ZAP70P43403 619 aa32.49■■■□□ 2.79
MSX1-201ENST00000382723 IL25Q9H293 177 aa32.49■■■□□ 2.79
MSX1-201ENST00000382723 ANTXR1Q9H6X2 564 aa32.49■■■□□ 2.79
MSX1-201ENST00000382723 REC8O95072 547 aa32.49■■■□□ 2.79
MSX1-201ENST00000382723 UQCRFS1P1P0C7P4 283 aa32.49■■■□□ 2.79
MSX1-201ENST00000382723 ARAP2Q8WZ64 1704 aa32.49■■■□□ 2.79
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms