RNA–Protein interactions for RNA: ENST00000380324.7

USP3-202, Transcript of ubiquitin specific peptidase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP3, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-202ENST00000380324 MCTP1Q6DN14 999 aa14.4□□□□□ -0.1
USP3-202ENST00000380324 INTS4Q96HW7 963 aaKnown RBP14.4□□□□□ -0.1
USP3-202ENST00000380324 PDRG1Q9NUG6 133 aa14.4□□□□□ -0.1
USP3-202ENST00000380324 FBXO3Q9UK99 471 aa14.4□□□□□ -0.1
USP3-202ENST00000380324 AKAP2Q9Y2D5 859 aa14.4□□□□□ -0.1
USP3-202ENST00000380324 RPAP1Q9BWH6 1393 aaPredicted RBP14.4□□□□□ -0.1
USP3-202ENST00000380324 PDE8AO60658 829 aa14.4□□□□□ -0.11
USP3-202ENST00000380324 HCLS1P14317 486 aaPredicted RBP14.4□□□□□ -0.11
USP3-202ENST00000380324 CHAMP1Q96JM3 812 aa14.4□□□□□ -0.11
USP3-202ENST00000380324 LARGE1O95461 756 aa14.39□□□□□ -0.11
USP3-202ENST00000380324 ATP2B3Q16720 1220 aa14.39□□□□□ -0.11
USP3-202ENST00000380324 MCMDC2Q4G0Z9 681 aa14.39□□□□□ -0.11
USP3-202ENST00000380324 CCDC158Q5M9N0 1113 aa14.39□□□□□ -0.11
USP3-202ENST00000380324 SUSD4Q5VX71 490 aa14.39□□□□□ -0.11
USP3-202ENST00000380324 KCNB2Q92953 911 aa14.39□□□□□ -0.11
USP3-202ENST00000380324 TCEANC2Q96MN5 208 aa14.39□□□□□ -0.11
USP3-202ENST00000380324 ZSWIM6Q9HCJ5 1215 aa14.39□□□□□ -0.11
USP3-202ENST00000380324 LIMCH1Q9UPQ0 1083 aa14.39□□□□□ -0.11
USP3-202ENST00000380324 DDX60Q8IY21 1712 aaKnown RBP14.39□□□□□ -0.11
USP3-202ENST00000380324 CAMTA2O94983 1202 aa14.38□□□□□ -0.11
USP3-202ENST00000380324 PTF1AQ7RTS3 328 aa14.38□□□□□ -0.11
USP3-202ENST00000380324 SMARCC1Q92922 1105 aaPredicted RBP14.38□□□□□ -0.11
USP3-202ENST00000380324 BCORQ6W2J9 1755 aa14.38□□□□□ -0.11
USP3-202ENST00000380324 MYH7P12883 1935 aa14.38□□□□□ -0.11
USP3-202ENST00000380324 SH3TC1Q8TE82 1336 aa14.38□□□□□ -0.11
USP3-202ENST00000380324 SCARF1Q14162 830 aa14.38□□□□□ -0.11
USP3-202ENST00000380324 FAM182BQ5T319 152 aa14.38□□□□□ -0.11
USP3-202ENST00000380324 VPS53Q5VIR6 699 aa14.38□□□□□ -0.11
USP3-202ENST00000380324 PI16Q6UXB8 463 aa14.38□□□□□ -0.11
USP3-202ENST00000380324 CLEC17AQ6ZS10 378 aa14.38□□□□□ -0.11
USP3-202ENST00000380324 TM6SF1Q9BZW5 370 aa14.38□□□□□ -0.11
USP3-202ENST00000380324 USP21Q9UK80 565 aa14.38□□□□□ -0.11
USP3-202ENST00000380324 NIP7Q9Y221 180 aaKnown RBP eCLIP14.38□□□□□ -0.11
USP3-202ENST00000380324 RIPOR2Q9Y4F9 1068 aa14.38□□□□□ -0.11
USP3-202ENST00000380324 BTAF1O14981 1849 aa14.37□□□□□ -0.11
USP3-202ENST00000380324 DTNBO60941 627 aa14.37□□□□□ -0.11
USP3-202ENST00000380324 LRP5O75197 1615 aa14.37□□□□□ -0.11
USP3-202ENST00000380324 LINC00116Q8NCU8 138 aa14.37□□□□□ -0.11
USP3-202ENST00000380324 UTP14AQ9BVJ6 771 aaKnown RBP14.37□□□□□ -0.11
USP3-202ENST00000380324 PSMA5P28066 241 aa14.36□□□□□ -0.11
USP3-202ENST00000380324 BLOC1S2Q6QNY1 142 aa14.36□□□□□ -0.11
USP3-202ENST00000380324 HMG20BQ9P0W2 317 aa14.36□□□□□ -0.11
USP3-202ENST00000380324 LAMB2P55268 1798 aa14.36□□□□□ -0.11
USP3-202ENST00000380324 AKAP11Q9UKA4 1901 aa14.36□□□□□ -0.11
USP3-202ENST00000380324 CCDC83Q8IWF9 413 aa14.36□□□□□ -0.11
USP3-202ENST00000380324 FNBP4Q8N3X1 1017 aaPredicted RBP14.36□□□□□ -0.11
USP3-202ENST00000380324 IL27Q8NEV9 243 aa14.36□□□□□ -0.11
USP3-202ENST00000380324 MYO5AQ9Y4I1 1855 aaKnown RBP14.36□□□□□ -0.11
USP3-202ENST00000380324 MAST3O60307 1309 aa14.35□□□□□ -0.11
USP3-202ENST00000380324 LAMA4Q16363 1823 aa14.35□□□□□ -0.11
USP3-202ENST00000380324 PTMSP20962 102 aa14.35□□□□□ -0.11
USP3-202ENST00000380324 FOXD4L6Q3SYB3 417 aaPredicted RBP14.35□□□□□ -0.11
USP3-202ENST00000380324 FOXD4L3Q6VB84 417 aaPredicted RBP14.35□□□□□ -0.11
USP3-202ENST00000380324 SMIM5Q71RC9 77 aa14.35□□□□□ -0.11
USP3-202ENST00000380324 HELBQ8NG08 1087 aaPredicted RBP14.35□□□□□ -0.11
USP3-202ENST00000380324 BRD1O95696 1058 aa14.35□□□□□ -0.11
USP3-202ENST00000380324 ZAP70P43403 619 aa14.35□□□□□ -0.11
USP3-202ENST00000380324 ZMYM1Q5SVZ6 1142 aa14.35□□□□□ -0.11
USP3-202ENST00000380324 USPL1Q5W0Q7 1092 aa14.35□□□□□ -0.11
USP3-202ENST00000380324 VGLL2Q8N8G2 317 aa14.35□□□□□ -0.11
USP3-202ENST00000380324 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.35□□□□□ -0.11
USP3-202ENST00000380324 U3KPZ7 1027 aaPredicted RBP14.35□□□□□ -0.11
USP3-202ENST00000380324 TCHHQ07283 1943 aa14.34□□□□□ -0.11
USP3-202ENST00000380324 THSD7AQ9UPZ6 1657 aa14.34□□□□□ -0.11
USP3-202ENST00000380324 RNF113AO15541 343 aaKnown RBP14.34□□□□□ -0.11
USP3-202ENST00000380324 CYP21A2P08686 494 aa14.34□□□□□ -0.11
USP3-202ENST00000380324 MEX3CQ5U5Q3 659 aaKnown RBP14.34□□□□□ -0.11
USP3-202ENST00000380324 SEC31BQ9NQW1 1179 aa14.34□□□□□ -0.11
USP3-202ENST00000380324 HELLSQ9NRZ9 838 aa14.34□□□□□ -0.11
USP3-202ENST00000380324 DDX49Q9Y6V7 483 aaKnown RBP14.34□□□□□ -0.11
USP3-202ENST00000380324 ZNF831Q5JPB2 1677 aa14.34□□□□□ -0.11
USP3-202ENST00000380324 CASZ1Q86V15 1759 aa14.34□□□□□ -0.11
USP3-202ENST00000380324 M0R2C6 588 aa14.33□□□□□ -0.11
USP3-202ENST00000380324 PDE8BO95263 885 aa14.33□□□□□ -0.11
USP3-202ENST00000380324 NTSR2O95665 410 aa14.33□□□□□ -0.11
USP3-202ENST00000380324 RPS6KB1P23443 525 aa14.33□□□□□ -0.11
USP3-202ENST00000380324 MCAMP43121 646 aa14.33□□□□□ -0.11
USP3-202ENST00000380324 ME3Q16798 604 aa14.33□□□□□ -0.11
USP3-202ENST00000380324 SKOR2Q2VWA4 1001 aaPredicted RBP14.33□□□□□ -0.11
USP3-202ENST00000380324 PARP10Q53GL7 1025 aa14.33□□□□□ -0.11
USP3-202ENST00000380324 NECAB1Q8N987 351 aa14.33□□□□□ -0.11
USP3-202ENST00000380324 TPCN1Q9ULQ1 816 aa14.33□□□□□ -0.11
USP3-202ENST00000380324 SMC3Q9UQE7 1217 aa14.33□□□□□ -0.11
USP3-202ENST00000380324 ZNF652Q9Y2D9 606 aa14.33□□□□□ -0.11
USP3-202ENST00000380324 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.33□□□□□ -0.11
USP3-202ENST00000380324 SPATA31A6Q5VVP1 1343 aa14.33□□□□□ -0.12
USP3-202ENST00000380324 WASHC4Q2M389 1173 aa14.33□□□□□ -0.12
USP3-202ENST00000380324 ARAP2Q8WZ64 1704 aa14.33□□□□□ -0.12
USP3-202ENST00000380324 NHSQ6T4R5 1651 aa14.33□□□□□ -0.12
USP3-202ENST00000380324 MPHOSPH8Q99549 860 aa14.32□□□□□ -0.12
USP3-202ENST00000380324 SH2B1Q9NRF2 756 aaPredicted RBP14.32□□□□□ -0.12
USP3-202ENST00000380324 SCN7AQ01118 1682 aa14.32□□□□□ -0.12
USP3-202ENST00000380324 TAF1P21675 1872 aa14.32□□□□□ -0.12
USP3-202ENST00000380324 ABCC12Q96J65 1359 aa14.32□□□□□ -0.12
USP3-202ENST00000380324 SNAP23O00161 211 aa14.32□□□□□ -0.12
USP3-202ENST00000380324 PRPF40AO75400 957 aaKnown RBP14.32□□□□□ -0.12
USP3-202ENST00000380324 ST3GAL1Q11201 340 aa14.32□□□□□ -0.12
USP3-202ENST00000380324 KRT32Q14532 448 aa14.32□□□□□ -0.12
USP3-202ENST00000380324 BICDL1Q6ZP65 573 aa14.32□□□□□ -0.12
USP3-202ENST00000380324 OSBP2Q969R2 916 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms