RNA–Protein interactions for RNA: ENST00000378060.8

VPS36-201, Transcript of vacuolar protein sorting 36 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS36, Length 4,417 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS36-201ENST00000378060 KIAA1328Q86T90 577 aa9.73□□□□□ -0.85
VPS36-201ENST00000378060 EYA1Q99502 592 aa9.73□□□□□ -0.85
VPS36-201ENST00000378060 POTEB2H3BUK9 544 aa9.72□□□□□ -0.85
VPS36-201ENST00000378060 TUBB4AP04350 444 aa9.72□□□□□ -0.85
VPS36-201ENST00000378060 RLBP1P12271 317 aa9.72□□□□□ -0.85
VPS36-201ENST00000378060 MEIS3Q99687 375 aa9.72□□□□□ -0.85
VPS36-201ENST00000378060 BMS1Q14692 1282 aaKnown RBP9.72□□□□□ -0.85
VPS36-201ENST00000378060 KIF4BQ2VIQ3 1234 aa9.72□□□□□ -0.85
VPS36-201ENST00000378060 METTL24Q5JXM2 366 aa9.72□□□□□ -0.85
VPS36-201ENST00000378060 JAKMIP3Q5VZ66 844 aa9.72□□□□□ -0.85
VPS36-201ENST00000378060 CCDC150Q8NCX0 1101 aa9.72□□□□□ -0.85
VPS36-201ENST00000378060 NEK1Q96PY6 1258 aa9.72□□□□□ -0.85
VPS36-201ENST00000378060 LRP2BPQ9P2M1 347 aa9.72□□□□□ -0.85
VPS36-201ENST00000378060 GOLGA6L7A0A1B0GV03 622 aa9.72□□□□□ -0.85
VPS36-201ENST00000378060 ZNF213O14771 459 aa9.72□□□□□ -0.85
VPS36-201ENST00000378060 CASQ1P31415 396 aa9.72□□□□□ -0.85
VPS36-201ENST00000378060 RBM25P49756 843 aaKnown RBP9.72□□□□□ -0.85
VPS36-201ENST00000378060 ATP8B2P98198 1209 aa9.72□□□□□ -0.85
VPS36-201ENST00000378060 IKQ13123 557 aaPredicted RBP9.72□□□□□ -0.85
VPS36-201ENST00000378060 DDX54Q8TDD1 881 aaKnown RBP9.72□□□□□ -0.85
VPS36-201ENST00000378060 UBE2Q2Q8WVN8 375 aa9.72□□□□□ -0.85
VPS36-201ENST00000378060 PLCH1Q4KWH8 1693 aa9.72□□□□□ -0.85
VPS36-201ENST00000378060 PHACTR3Q96KR7 559 aa9.72□□□□□ -0.85
VPS36-201ENST00000378060 MYD88Q99836 296 aa9.72□□□□□ -0.85
VPS36-201ENST00000378060 TANGO6Q9C0B7 1094 aa9.72□□□□□ -0.85
VPS36-201ENST00000378060 JCADQ9P266 1359 aa9.71□□□□□ -0.85
VPS36-201ENST00000378060 STARD3NLO95772 234 aa9.71□□□□□ -0.85
VPS36-201ENST00000378060 CALRP27797 417 aaKnown RBP9.71□□□□□ -0.85
VPS36-201ENST00000378060 CNNM3Q8NE01 707 aa9.71□□□□□ -0.85
VPS36-201ENST00000378060 KDM2BQ8NHM5 1336 aa9.71□□□□□ -0.85
VPS36-201ENST00000378060 LMO7Q8WWI1 1683 aa9.71□□□□□ -0.85
VPS36-201ENST00000378060 VAMP4O75379 141 aa9.71□□□□□ -0.86
VPS36-201ENST00000378060 ZFYVE27Q5T4F4 411 aa9.71□□□□□ -0.86
VPS36-201ENST00000378060 NAPBQ9H115 298 aa9.71□□□□□ -0.86
VPS36-201ENST00000378060 ERBB3P21860 1342 aa9.71□□□□□ -0.86
VPS36-201ENST00000378060 PI4KAP2A4QPH2 592 aa9.71□□□□□ -0.86
VPS36-201ENST00000378060 SNW1Q13573 536 aaKnown RBP9.71□□□□□ -0.86
VPS36-201ENST00000378060 USP48Q86UV5 1035 aa9.71□□□□□ -0.86
VPS36-201ENST00000378060 PI4KAP1Q8N8J0 262 aa9.71□□□□□ -0.86
VPS36-201ENST00000378060 RNF41Q9H4P4 317 aaPredicted RBP9.71□□□□□ -0.86
VPS36-201ENST00000378060 RGPD1P0DJD0 1748 aa9.71□□□□□ -0.86
VPS36-201ENST00000378060 PPP4R3BQ5MIZ7 849 aa9.7□□□□□ -0.86
VPS36-201ENST00000378060 KANK3Q6NY19 840 aa9.7□□□□□ -0.86
VPS36-201ENST00000378060 GIMAP6Q6P9H5 292 aa9.7□□□□□ -0.86
VPS36-201ENST00000378060 TAF4BQ92750 862 aa9.7□□□□□ -0.86
VPS36-201ENST00000378060 IGHMBP2P38935 993 aaKnown RBP9.7□□□□□ -0.86
VPS36-201ENST00000378060 SPA17Q15506 151 aa9.7□□□□□ -0.86
VPS36-201ENST00000378060 TRMT1Q9NXH9 659 aaKnown RBP9.7□□□□□ -0.86
VPS36-201ENST00000378060 RAI14Q9P0K7 980 aa9.7□□□□□ -0.86
VPS36-201ENST00000378060 ERICH4A6NGS2 130 aa9.7□□□□□ -0.86
VPS36-201ENST00000378060 GOLGA8BA8MQT2 603 aa9.7□□□□□ -0.86
VPS36-201ENST00000378060 PRIM1P49642 420 aaKnown RBP9.7□□□□□ -0.86
VPS36-201ENST00000378060 MAP3K12Q12852 859 aa9.7□□□□□ -0.86
VPS36-201ENST00000378060 CEP135Q66GS9 1140 aa9.7□□□□□ -0.86
VPS36-201ENST00000378060 COL5A2P05997 1499 aaPredicted RBP9.7□□□□□ -0.86
VPS36-201ENST00000378060 A0A087WZG4 1122 aa9.7□□□□□ -0.86
VPS36-201ENST00000378060 ALDH1L1O75891 902 aa9.7□□□□□ -0.86
VPS36-201ENST00000378060 SEC24BO95487 1268 aa9.7□□□□□ -0.86
VPS36-201ENST00000378060 F13A1P00488 732 aa9.7□□□□□ -0.86
VPS36-201ENST00000378060 IFIT5Q13325 482 aaKnown RBP9.7□□□□□ -0.86
VPS36-201ENST00000378060 STK11IPQ8N1F8 1099 aa9.7□□□□□ -0.86
VPS36-201ENST00000378060 PYM1Q9BRP8 204 aaKnown RBP9.7□□□□□ -0.86
VPS36-201ENST00000378060 ORC3Q9UBD5 711 aaPredicted RBP9.7□□□□□ -0.86
VPS36-201ENST00000378060 GUCY1B3Q02153 619 aa9.69□□□□□ -0.86
VPS36-201ENST00000378060 CCDC102BQ68D86 513 aa9.69□□□□□ -0.86
VPS36-201ENST00000378060 TMC6Q7Z403 805 aa9.69□□□□□ -0.86
VPS36-201ENST00000378060 ZNF287Q9HBT7 754 aa9.69□□□□□ -0.86
VPS36-201ENST00000378060 USP16Q9Y5T5 823 aa9.69□□□□□ -0.86
VPS36-201ENST00000378060 CPDO75976 1380 aa9.69□□□□□ -0.86
VPS36-201ENST00000378060 HSP90AB3PQ58FF7 597 aa9.69□□□□□ -0.86
VPS36-201ENST00000378060 MEX3CQ5U5Q3 659 aaKnown RBP9.69□□□□□ -0.86
VPS36-201ENST00000378060 C8orf58Q8NAV2 365 aa9.69□□□□□ -0.86
VPS36-201ENST00000378060 FAM107BQ9H098 131 aa9.69□□□□□ -0.86
VPS36-201ENST00000378060 SLC12A7Q9Y666 1083 aa9.69□□□□□ -0.86
VPS36-201ENST00000378060 FGFR1OPO95684 399 aaKnown RBP9.69□□□□□ -0.86
VPS36-201ENST00000378060 FKBP15Q5T1M5 1219 aa9.69□□□□□ -0.86
VPS36-201ENST00000378060 PLEKHM2Q8IWE5 1019 aa9.69□□□□□ -0.86
VPS36-201ENST00000378060 CTCFLQ8NI51 663 aaPredicted RBP9.69□□□□□ -0.86
VPS36-201ENST00000378060 NGLY1Q96IV0 654 aa9.69□□□□□ -0.86
VPS36-201ENST00000378060 MAP3K2Q9Y2U5 619 aa9.69□□□□□ -0.86
VPS36-201ENST00000378060 CCT2P78371 535 aaKnown RBP9.68□□□□□ -0.86
VPS36-201ENST00000378060 SSRP1Q08945 709 aaKnown RBP9.68□□□□□ -0.86
VPS36-201ENST00000378060 IQCA1Q86XH1 822 aa9.68□□□□□ -0.86
VPS36-201ENST00000378060 KCNG4Q8TDN1 519 aa9.68□□□□□ -0.86
VPS36-201ENST00000378060 LARP6Q9BRS8 491 aaKnown RBP9.68□□□□□ -0.86
VPS36-201ENST00000378060 RTL1A6NKG5 1358 aa9.68□□□□□ -0.86
VPS36-201ENST00000378060 SOS1Q07889 1333 aaPredicted RBP9.68□□□□□ -0.86
VPS36-201ENST00000378060 TTC41PQ6P2S7 1318 aa9.68□□□□□ -0.86
VPS36-201ENST00000378060 YEATS4O95619 227 aa9.68□□□□□ -0.86
VPS36-201ENST00000378060 IARSP41252 1262 aaKnown RBP9.68□□□□□ -0.86
VPS36-201ENST00000378060 KLHL10Q6JEL2 608 aa9.68□□□□□ -0.86
VPS36-201ENST00000378060 MPRIPQ6WCQ1 1025 aa9.68□□□□□ -0.86
VPS36-201ENST00000378060 PRM3Q9NNZ6 103 aa9.68□□□□□ -0.86
VPS36-201ENST00000378060 SHTN1A0MZ66 631 aa9.68□□□□□ -0.86
VPS36-201ENST00000378060 USO1O60763 962 aaKnown RBP9.68□□□□□ -0.86
VPS36-201ENST00000378060 PAFAH1B1P43034 410 aa9.68□□□□□ -0.86
VPS36-201ENST00000378060 CEP85Q6P2H3 762 aa9.68□□□□□ -0.86
VPS36-201ENST00000378060 CCDC186Q7Z3E2 898 aa9.68□□□□□ -0.86
VPS36-201ENST00000378060 KRT222Q8N1A0 295 aa9.68□□□□□ -0.86
VPS36-201ENST00000378060 USP26Q9BXU7 913 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms