RNA–Protein interactions for RNA: ENST00000377575.2

HMGN4-201, Transcript of high mobility group nucleosomal binding domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN4, Length 1,225 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4-201ENST00000377575 CT47B1P0C2W7 299 aaPredicted RBP21.32■■□□□ 1
HMGN4-201ENST00000377575 IGHMBP2P38935 993 aaKnown RBP21.32■■□□□ 1
HMGN4-201ENST00000377575 FAM161AQ3B820 660 aa21.32■■□□□ 1
HMGN4-201ENST00000377575 TRMT2AQ8IZ69 625 aaKnown RBP21.32■■□□□ 1
HMGN4-201ENST00000377575 SRCIN1Q9C0H9 1055 aa21.32■■□□□ 1
HMGN4-201ENST00000377575 BSDC1Q9NW68 430 aaPredicted RBP21.32■■□□□ 1
HMGN4-201ENST00000377575 GRM8O00222 908 aa21.31■■□□□ 1
HMGN4-201ENST00000377575 RIMBP2O15034 1052 aa21.31■■□□□ 1
HMGN4-201ENST00000377575 RAD17O75943 681 aa21.31■■□□□ 1
HMGN4-201ENST00000377575 ITGA6P23229 1130 aa21.31■■□□□ 1
HMGN4-201ENST00000377575 ALDH1L2Q3SY69 923 aa21.31■■□□□ 1
HMGN4-201ENST00000377575 MIER1Q8N108 512 aa21.31■■□□□ 1
HMGN4-201ENST00000377575 SSH1Q8WYL5 1049 aa21.31■■□□□ 1
HMGN4-201ENST00000377575 ZC3H12CQ9C0D7 883 aaKnown RBP21.31■■□□□ 1
HMGN4-201ENST00000377575 DBNDD1Q9H9R9 158 aa21.31■■□□□ 1
HMGN4-201ENST00000377575 C9orf78Q9NZ63 289 aaPredicted RBP21.31■■□□□ 1
HMGN4-201ENST00000377575 CLEC11AQ9Y240 323 aa21.31■■□□□ 1
HMGN4-201ENST00000377575 A0A1B0GUL6 1792 aa21.31■■□□□ 1
HMGN4-201ENST00000377575 YDJCA8MPS7 323 aa21.3■■□□□ 1
HMGN4-201ENST00000377575 CSF1RP07333 972 aa21.3■■□□□ 1
HMGN4-201ENST00000377575 GPRC5DQ9NZD1 345 aa21.3■■□□□ 1
HMGN4-201ENST00000377575 SCN9AQ15858 1988 aa21.29■■□□□ 1
HMGN4-201ENST00000377575 G3V3G9 751 aa21.29■■□□□ 1
HMGN4-201ENST00000377575 ECE2O60344 883 aa21.29■■□□□ 1
HMGN4-201ENST00000377575 ATP2B4P23634 1241 aa21.29■■□□□ 1
HMGN4-201ENST00000377575 DCAF8Q5TAQ9 597 aa21.29■■□□□ 1
HMGN4-201ENST00000377575 GPR101Q96P66 508 aaPredicted RBP21.29■■□□□ 1
HMGN4-201ENST00000377575 MPHOSPH8Q99549 860 aa21.29■■□□□ 1
HMGN4-201ENST00000377575 BCL2L13Q9BXK5 485 aa21.29■■□□□ 1
HMGN4-201ENST00000377575 ANKRD18BA2A2Z9 1011 aa21.28■■□□□ 1
HMGN4-201ENST00000377575 EPS15P42566 896 aa21.28■■□□□ 1
HMGN4-201ENST00000377575 GMPSP49915 693 aaPredicted RBP21.28■■□□□ 1
HMGN4-201ENST00000377575 USP50Q70EL3 339 aaPredicted RBP21.28■■□□□ 1
HMGN4-201ENST00000377575 SMC4Q9NTJ3 1288 aa21.28■■□□□ 1
HMGN4-201ENST00000377575 MINPP1Q9UNW1 487 aa21.28■■□□□ 1
HMGN4-201ENST00000377575 DOK7Q18PE1 504 aa21.27■■□□□ 1
HMGN4-201ENST00000377575 ADARB2Q9NS39 739 aaKnown RBP21.27■■□□□ 1
HMGN4-201ENST00000377575 CHMP3Q9Y3E7 222 aa21.27■■□□□ 1
HMGN4-201ENST00000377575 MED23Q9ULK4 1368 aa21.26■□□□□ 0.99
HMGN4-201ENST00000377575 HTRA3P83110 453 aa21.26■□□□□ 0.99
HMGN4-201ENST00000377575 FOXO4P98177 505 aa21.26■□□□□ 0.99
HMGN4-201ENST00000377575 IFIT5Q13325 482 aaKnown RBP21.26■□□□□ 0.99
HMGN4-201ENST00000377575 PSMD14O00487 310 aa21.25■□□□□ 0.99
HMGN4-201ENST00000377575 ANKRD2Q9GZV1 360 aa21.25■□□□□ 0.99
HMGN4-201ENST00000377575 PASKQ96RG2 1323 aa21.25■□□□□ 0.99
HMGN4-201ENST00000377575 CCT4P50991 539 aaKnown RBP21.24■□□□□ 0.99
HMGN4-201ENST00000377575 DNAJC5GQ8N7S2 189 aa21.24■□□□□ 0.99
HMGN4-201ENST00000377575 KLRG1Q96E93 195 aa21.24■□□□□ 0.99
HMGN4-201ENST00000377575 RPS12P25398 132 aaKnown RBP21.23■□□□□ 0.99
HMGN4-201ENST00000377575 CCDC57Q2TAC2 916 aa21.23■□□□□ 0.99
HMGN4-201ENST00000377575 MAP1SQ66K74 1059 aaPredicted RBP21.23■□□□□ 0.99
HMGN4-201ENST00000377575 LMBR1LQ6UX01 489 aa21.23■□□□□ 0.99
HMGN4-201ENST00000377575 CNTROBQ8N137 903 aa21.23■□□□□ 0.99
HMGN4-201ENST00000377575 DPF2Q92785 391 aa21.23■□□□□ 0.99
HMGN4-201ENST00000377575 CREBZFQ9NS37 354 aa21.23■□□□□ 0.99
HMGN4-201ENST00000377575 LEMD3Q9Y2U8 911 aa21.23■□□□□ 0.99
HMGN4-201ENST00000377575 TRPM7Q96QT4 1865 aa21.23■□□□□ 0.99
HMGN4-201ENST00000377575 UTYO14607 1347 aa21.23■□□□□ 0.99
HMGN4-201ENST00000377575 H7C1D1 291 aa21.22■□□□□ 0.99
HMGN4-201ENST00000377575 TAF7LQ5H9L4 462 aa21.22■□□□□ 0.99
HMGN4-201ENST00000377575 ZNF609O15014 1411 aa21.21■□□□□ 0.99
HMGN4-201ENST00000377575 ITGBL1O95965 494 aaPredicted RBP21.21■□□□□ 0.99
HMGN4-201ENST00000377575 KCNJ4P48050 445 aa21.21■□□□□ 0.99
HMGN4-201ENST00000377575 EPHA10Q5JZY3 1008 aa21.21■□□□□ 0.99
HMGN4-201ENST00000377575 MICALL2Q8IY33 904 aa21.21■□□□□ 0.99
HMGN4-201ENST00000377575 CNOT7Q9UIV1 285 aaKnown RBP21.21■□□□□ 0.99
HMGN4-201ENST00000377575 ZBTB12Q9Y330 459 aaPredicted RBP21.21■□□□□ 0.99
HMGN4-201ENST00000377575 ZNF646O15015 1829 aaPredicted RBP21.2■□□□□ 0.98
HMGN4-201ENST00000377575 NBPF7P0C2Y1 421 aaPredicted RBP21.2■□□□□ 0.98
HMGN4-201ENST00000377575 BRPF1P55201 1214 aaPredicted RBP21.2■□□□□ 0.98
HMGN4-201ENST00000377575 HNRNPUQ00839 825 aaKnown RBP eCLIP21.2■□□□□ 0.98
HMGN4-201ENST00000377575 CHRNDQ07001 517 aa21.2■□□□□ 0.98
HMGN4-201ENST00000377575 PODNQ7Z5L7 613 aa21.2■□□□□ 0.98
HMGN4-201ENST00000377575 SUCLG2Q96I99 432 aa21.2■□□□□ 0.98
HMGN4-201ENST00000377575 ZNF804BA4D1E1 1349 aa21.2■□□□□ 0.98
HMGN4-201ENST00000377575 VIL1P09327 827 aaKnown RBP21.19■□□□□ 0.98
HMGN4-201ENST00000377575 KCNQ5Q9NR82 932 aa21.19■□□□□ 0.98
HMGN4-201ENST00000377575 KIF16BQ96L93 1317 aa21.19■□□□□ 0.98
HMGN4-201ENST00000377575 API5Q9BZZ5 524 aaKnown RBP21.18■□□□□ 0.98
HMGN4-201ENST00000377575 TMEM88BA6NKF7 163 aa21.17■□□□□ 0.98
HMGN4-201ENST00000377575 RARSP54136 660 aaKnown RBP21.17■□□□□ 0.98
HMGN4-201ENST00000377575 LDHAL6AQ6ZMR3 332 aa21.17■□□□□ 0.98
HMGN4-201ENST00000377575 TRPM4Q8TD43 1214 aa21.17■□□□□ 0.98
HMGN4-201ENST00000377575 ZC3H15Q8WU90 426 aaKnown RBP21.17■□□□□ 0.98
HMGN4-201ENST00000377575 COA1Q9GZY4 146 aa21.17■□□□□ 0.98
HMGN4-201ENST00000377575 BICC1Q9H694 974 aaKnown RBP21.17■□□□□ 0.98
HMGN4-201ENST00000377575 CNNM1Q9NRU3 951 aa21.17■□□□□ 0.98
HMGN4-201ENST00000377575 NOB1Q9ULX3 412 aaKnown RBP21.17■□□□□ 0.98
HMGN4-201ENST00000377575 SHTN1A0MZ66 631 aa21.16■□□□□ 0.98
HMGN4-201ENST00000377575 USP17L3A6NCW0 530 aa21.16■□□□□ 0.98
HMGN4-201ENST00000377575 USP17L4A6NCW7 530 aa21.16■□□□□ 0.98
HMGN4-201ENST00000377575 WTIPA6NIX2 430 aaPredicted RBP21.16■□□□□ 0.98
HMGN4-201ENST00000377575 RSBN1LQ6PCB5 846 aaPredicted RBP21.16■□□□□ 0.98
HMGN4-201ENST00000377575 USP17L1Q7RTZ2 530 aa21.16■□□□□ 0.98
HMGN4-201ENST00000377575 AGBL3Q8NEM8 1001 aa21.16■□□□□ 0.98
HMGN4-201ENST00000377575 KAZALD1Q96I82 304 aa21.16■□□□□ 0.98
HMGN4-201ENST00000377575 RABL6Q3YEC7 729 aaPredicted RBP21.15■□□□□ 0.98
HMGN4-201ENST00000377575 POTEDQ86YR6 584 aa21.15■□□□□ 0.98
HMGN4-201ENST00000377575 ZNF594Q96JF6 807 aaPredicted RBP21.15■□□□□ 0.98
HMGN4-201ENST00000377575 JMYQ8N9B5 988 aa21.14■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms