RNA–Protein interactions for RNA: ENST00000376854.5

C9orf40-201, Transcript of chromosome 9 open reading frame 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C9orf40, Length 2,327 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40-201ENST00000376854 MRVI1Q9Y6F6 885 aa29.93■■■□□ 2.38
C9orf40-201ENST00000376854 AFDNP55196 1824 aaKnown RBP29.92■■■□□ 2.38
C9orf40-201ENST00000376854 CCDC9Q9Y3X0 531 aaKnown RBP29.92■■■□□ 2.38
C9orf40-201ENST00000376854 KBTBD3Q8NAB2 608 aa29.91■■■□□ 2.38
C9orf40-201ENST00000376854 BRF1Q92994 677 aa29.91■■■□□ 2.38
C9orf40-201ENST00000376854 C17orf53Q8N3J3 647 aaPredicted RBP29.91■■■□□ 2.38
C9orf40-201ENST00000376854 DDX19AQ9NUU7 478 aaKnown RBP29.91■■■□□ 2.38
C9orf40-201ENST00000376854 CKAP2LQ8IYA6 745 aa29.9■■■□□ 2.38
C9orf40-201ENST00000376854 ARFGEF2Q9Y6D5 1785 aa29.9■■■□□ 2.38
C9orf40-201ENST00000376854 PLEKHG2Q9H7P9 1386 aa29.9■■■□□ 2.38
C9orf40-201ENST00000376854 RESTQ13127 1097 aa29.89■■■□□ 2.38
C9orf40-201ENST00000376854 SH3TC1Q8TE82 1336 aa29.89■■■□□ 2.38
C9orf40-201ENST00000376854 NBPF26B4DH59 902 aa29.89■■■□□ 2.37
C9orf40-201ENST00000376854 FOXO4P98177 505 aa29.89■■■□□ 2.37
C9orf40-201ENST00000376854 NBPF14Q5TI25 921 aa29.89■■■□□ 2.37
C9orf40-201ENST00000376854 NBPF10Q6P3W6 841 aaKnown RBP29.89■■■□□ 2.37
C9orf40-201ENST00000376854 NBPF15Q8N660 670 aa29.89■■■□□ 2.37
C9orf40-201ENST00000376854 SPTLC3Q9NUV7 552 aa29.89■■■□□ 2.37
C9orf40-201ENST00000376854 H3BQV1 296 aa29.88■■■□□ 2.37
C9orf40-201ENST00000376854 FGD1P98174 961 aa29.88■■■□□ 2.37
C9orf40-201ENST00000376854 IFFO2Q5TF58 517 aa29.88■■■□□ 2.37
C9orf40-201ENST00000376854 DDX11Q96FC9 970 aa29.88■■■□□ 2.37
C9orf40-201ENST00000376854 NEUROD6Q96NK8 337 aa29.88■■■□□ 2.37
C9orf40-201ENST00000376854 LRRC2Q9BYS8 371 aa29.88■■■□□ 2.37
C9orf40-201ENST00000376854 H7C1W4 665 aa29.88■■■□□ 2.37
C9orf40-201ENST00000376854 TPM3P06753 285 aa29.88■■■□□ 2.37
C9orf40-201ENST00000376854 SPC24Q8NBT2 197 aa29.88■■■□□ 2.37
C9orf40-201ENST00000376854 CLSTN2Q9H4D0 955 aa29.88■■■□□ 2.37
C9orf40-201ENST00000376854 PRDM11Q9NQV5 511 aa29.88■■■□□ 2.37
C9orf40-201ENST00000376854 SCRN1Q12765 414 aa29.87■■■□□ 2.37
C9orf40-201ENST00000376854 STOX1Q6ZVD7 989 aa29.87■■■□□ 2.37
C9orf40-201ENST00000376854 TOM1L2Q6ZVM7 507 aa29.87■■■□□ 2.37
C9orf40-201ENST00000376854 LUZP1Q86V48 1076 aa29.87■■■□□ 2.37
C9orf40-201ENST00000376854 BICD2Q8TD16 824 aa29.87■■■□□ 2.37
C9orf40-201ENST00000376854 PGBD1Q96JS3 809 aa29.87■■■□□ 2.37
C9orf40-201ENST00000376854 MAP7D2Q96T17 732 aa29.87■■■□□ 2.37
C9orf40-201ENST00000376854 XIRP1Q702N8 1843 aaKnown RBP29.86■■■□□ 2.37
C9orf40-201ENST00000376854 GOLGA6L6A8MZA4 724 aa29.86■■■□□ 2.37
C9orf40-201ENST00000376854 GOLIM4O00461 696 aa29.86■■■□□ 2.37
C9orf40-201ENST00000376854 ATG9AQ7Z3C6 839 aa29.86■■■□□ 2.37
C9orf40-201ENST00000376854 PAG1Q9NWQ8 432 aa29.86■■■□□ 2.37
C9orf40-201ENST00000376854 PALLDQ8WX93 1383 aa29.85■■■□□ 2.37
C9orf40-201ENST00000376854 HMGB1P09429 215 aaKnown RBP29.85■■■□□ 2.37
C9orf40-201ENST00000376854 RBM43Q6ZSC3 357 aaKnown RBP29.85■■■□□ 2.37
C9orf40-201ENST00000376854 KCNF1Q9H3M0 494 aa29.85■■■□□ 2.37
C9orf40-201ENST00000376854 ZSCAN16Q9H4T2 348 aaPredicted RBP29.85■■■□□ 2.37
C9orf40-201ENST00000376854 WDR17Q8IZU2 1322 aa29.85■■■□□ 2.37
C9orf40-201ENST00000376854 NR1I2O75469 434 aa29.85■■■□□ 2.37
C9orf40-201ENST00000376854 ANO6Q4KMQ2 910 aa29.85■■■□□ 2.37
C9orf40-201ENST00000376854 MYRIPQ8NFW9 859 aa29.85■■■□□ 2.37
C9orf40-201ENST00000376854 ZCRB1Q8TBF4 217 aaKnown RBP29.85■■■□□ 2.37
C9orf40-201ENST00000376854 PRIMPOLQ96LW4 560 aa29.85■■■□□ 2.37
C9orf40-201ENST00000376854 TTLL7Q6ZT98 887 aa29.84■■■□□ 2.37
C9orf40-201ENST00000376854 HELLSQ9NRZ9 838 aa29.84■■■□□ 2.37
C9orf40-201ENST00000376854 DHX32Q7L7V1 743 aaKnown RBP29.84■■■□□ 2.37
C9orf40-201ENST00000376854 CBX8Q9HC52 389 aa29.84■■■□□ 2.37
C9orf40-201ENST00000376854 PFKFB2O60825 505 aa29.83■■■□□ 2.37
C9orf40-201ENST00000376854 SLFNL1Q499Z3 407 aa29.83■■■□□ 2.37
C9orf40-201ENST00000376854 SMARCC2Q8TAQ2 1214 aa29.83■■■□□ 2.37
C9orf40-201ENST00000376854 LLPHQ9BRT6 129 aaKnown RBP29.83■■■□□ 2.37
C9orf40-201ENST00000376854 CWC25Q9NXE8 425 aaPredicted RBP29.83■■■□□ 2.37
C9orf40-201ENST00000376854 TIMM10P62072 90 aa29.83■■■□□ 2.37
C9orf40-201ENST00000376854 CFAP45Q9UL16 551 aa29.83■■■□□ 2.37
C9orf40-201ENST00000376854 KIAA1524Q8TCG1 905 aa29.82■■■□□ 2.36
C9orf40-201ENST00000376854 DSCC1Q9BVC3 393 aa29.82■■■□□ 2.36
C9orf40-201ENST00000376854 GPR108Q9NPR9 543 aa29.82■■■□□ 2.36
C9orf40-201ENST00000376854 LAMB4A4D0S4 1761 aa29.82■■■□□ 2.36
C9orf40-201ENST00000376854 PARP4Q9UKK3 1724 aaKnown RBP29.82■■■□□ 2.36
C9orf40-201ENST00000376854 A1BGP04217 495 aa29.82■■■□□ 2.36
C9orf40-201ENST00000376854 PCDH11XQ9BZA7 1347 aa29.81■■■□□ 2.36
C9orf40-201ENST00000376854 PCDH11YQ9BZA8 1340 aa29.81■■■□□ 2.36
C9orf40-201ENST00000376854 IL15P40933 162 aaPredicted RBP29.81■■■□□ 2.36
C9orf40-201ENST00000376854 HMGN5P82970 282 aaKnown RBP29.81■■■□□ 2.36
C9orf40-201ENST00000376854 PYCARDQ9ULZ3 195 aa29.81■■■□□ 2.36
C9orf40-201ENST00000376854 ZMYM1Q5SVZ6 1142 aa29.8■■■□□ 2.36
C9orf40-201ENST00000376854 NSUN7Q8NE18 718 aaKnown RBP29.8■■■□□ 2.36
C9orf40-201ENST00000376854 APOBRQ0VD83 1088 aa29.79■■■□□ 2.36
C9orf40-201ENST00000376854 COL5A2P05997 1499 aaPredicted RBP29.78■■■□□ 2.36
C9orf40-201ENST00000376854 EXOSC10Q01780 885 aaKnown RBP29.78■■■□□ 2.36
C9orf40-201ENST00000376854 NAA16Q6N069 864 aaPredicted RBP29.78■■■□□ 2.36
C9orf40-201ENST00000376854 MTERF4Q7Z6M4 381 aaKnown RBP29.78■■■□□ 2.36
C9orf40-201ENST00000376854 LRRC24Q50LG9 513 aa29.77■■■□□ 2.36
C9orf40-201ENST00000376854 TICAM2Q86XR7 235 aa29.77■■■□□ 2.36
C9orf40-201ENST00000376854 PTPDC1A2A3K4 754 aa29.77■■■□□ 2.36
C9orf40-201ENST00000376854 EYA2O00167 538 aa29.77■■■□□ 2.36
C9orf40-201ENST00000376854 CTDNEP1O95476 244 aa29.77■■■□□ 2.36
C9orf40-201ENST00000376854 CEBPZQ03701 1054 aaKnown RBP29.77■■■□□ 2.36
C9orf40-201ENST00000376854 HSPD1P10809 573 aaKnown RBP29.76■■■□□ 2.35
C9orf40-201ENST00000376854 FOSBP53539 338 aa29.76■■■□□ 2.35
C9orf40-201ENST00000376854 ZNF594Q96JF6 807 aaPredicted RBP29.76■■■□□ 2.35
C9orf40-201ENST00000376854 E7EWF7 191 aa29.76■■■□□ 2.35
C9orf40-201ENST00000376854 IFIT1P09914 478 aaKnown RBP29.76■■■□□ 2.35
C9orf40-201ENST00000376854 AGXT2Q9BYV1 514 aa29.76■■■□□ 2.35
C9orf40-201ENST00000376854 ZBTB3Q9H5J0 574 aa29.76■■■□□ 2.35
C9orf40-201ENST00000376854 KCPQ6ZWJ8 1503 aa29.75■■■□□ 2.35
C9orf40-201ENST00000376854 PTGS1P23219 599 aa29.75■■■□□ 2.35
C9orf40-201ENST00000376854 ADD1P35611 737 aaKnown RBP29.75■■■□□ 2.35
C9orf40-201ENST00000376854 ZNF165P49910 485 aa29.75■■■□□ 2.35
C9orf40-201ENST00000376854 TDRD7Q8NHU6 1098 aaKnown RBP29.75■■■□□ 2.35
C9orf40-201ENST00000376854 STRN4Q9NRL3 753 aa29.75■■■□□ 2.35
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms