RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 EPB41L2O43491 1005 aaKnown RBP16.7■□□□□ 0.26
PTPRF-202ENST00000372405 CHGBP05060 677 aa16.7■□□□□ 0.26
PTPRF-202ENST00000372405 HSCBQ8IWL3 235 aa16.7■□□□□ 0.26
PTPRF-202ENST00000372405 SNRKQ9NRH2 765 aa16.7■□□□□ 0.26
PTPRF-202ENST00000372405 PDE8BO95263 885 aa16.69■□□□□ 0.26
PTPRF-202ENST00000372405 ATP2B3Q16720 1220 aa16.69■□□□□ 0.26
PTPRF-202ENST00000372405 SLC10A5Q5PT55 438 aa16.69■□□□□ 0.26
PTPRF-202ENST00000372405 DDX46Q7L014 1031 aaKnown RBP16.69■□□□□ 0.26
PTPRF-202ENST00000372405 RUFY2Q8WXA3 655 aa16.69■□□□□ 0.26
PTPRF-202ENST00000372405 IL17RAQ96F46 866 aa16.69■□□□□ 0.26
PTPRF-202ENST00000372405 SETDB2Q96T68 719 aa16.69■□□□□ 0.26
PTPRF-202ENST00000372405 RGS17Q9UGC6 210 aaPredicted RBP16.69■□□□□ 0.26
PTPRF-202ENST00000372405 A0A1B0GUL6 1792 aa16.69■□□□□ 0.26
PTPRF-202ENST00000372405 HIP1O00291 1037 aa16.69■□□□□ 0.26
PTPRF-202ENST00000372405 HSP90B1P14625 803 aaKnown RBP16.69■□□□□ 0.26
PTPRF-202ENST00000372405 HSPA4P34932 840 aa16.69■□□□□ 0.26
PTPRF-202ENST00000372405 RFC4P35249 363 aa16.69■□□□□ 0.26
PTPRF-202ENST00000372405 PTH1RQ03431 593 aa16.69■□□□□ 0.26
PTPRF-202ENST00000372405 ANTXR1Q9H6X2 564 aa16.69■□□□□ 0.26
PTPRF-202ENST00000372405 RFX7Q2KHR2 1363 aa16.68■□□□□ 0.26
PTPRF-202ENST00000372405 MED23Q9ULK4 1368 aa16.68■□□□□ 0.26
PTPRF-202ENST00000372405 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.68■□□□□ 0.26
PTPRF-202ENST00000372405 SCARF1Q14162 830 aa16.68■□□□□ 0.26
PTPRF-202ENST00000372405 SF3B3Q15393 1217 aaKnown RBP16.68■□□□□ 0.26
PTPRF-202ENST00000372405 HELBQ8NG08 1087 aaPredicted RBP16.68■□□□□ 0.26
PTPRF-202ENST00000372405 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.68■□□□□ 0.26
PTPRF-202ENST00000372405 GOLIM4O00461 696 aa16.68■□□□□ 0.26
PTPRF-202ENST00000372405 IFIT1P09914 478 aaKnown RBP16.68■□□□□ 0.26
PTPRF-202ENST00000372405 ADRA2BP18089 450 aa16.68■□□□□ 0.26
PTPRF-202ENST00000372405 FGFR2P21802 821 aa16.68■□□□□ 0.26
PTPRF-202ENST00000372405 TXNRD1Q16881 649 aa16.68■□□□□ 0.26
PTPRF-202ENST00000372405 KBTBD3Q8NAB2 608 aa16.68■□□□□ 0.26
PTPRF-202ENST00000372405 PAG1Q9NWQ8 432 aa16.68■□□□□ 0.26
PTPRF-202ENST00000372405 TNRC6CQ9HCJ0 1690 aaKnown RBP16.67■□□□□ 0.26
PTPRF-202ENST00000372405 MROH5Q6ZUA9 1318 aa16.67■□□□□ 0.26
PTPRF-202ENST00000372405 RXRBP28702 533 aa16.67■□□□□ 0.26
PTPRF-202ENST00000372405 NBPF5PQ86XG9 351 aaPredicted RBP16.67■□□□□ 0.26
PTPRF-202ENST00000372405 SPRYD3Q8NCJ5 442 aa16.67■□□□□ 0.26
PTPRF-202ENST00000372405 SLKQ9H2G2 1235 aaPredicted RBP16.67■□□□□ 0.26
PTPRF-202ENST00000372405 ANAPC15P60006 121 aa16.66■□□□□ 0.26
PTPRF-202ENST00000372405 ZNF589Q86UQ0 364 aaPredicted RBP16.66■□□□□ 0.26
PTPRF-202ENST00000372405 CCDC24Q8N4L8 307 aa16.66■□□□□ 0.26
PTPRF-202ENST00000372405 MPHOSPH8Q99549 860 aa16.66■□□□□ 0.26
PTPRF-202ENST00000372405 ANP32EQ9BTT0 268 aa16.66■□□□□ 0.26
PTPRF-202ENST00000372405 NYXQ9GZU5 481 aa16.66■□□□□ 0.26
PTPRF-202ENST00000372405 SNAP23O00161 211 aa16.66■□□□□ 0.26
PTPRF-202ENST00000372405 MCCP23508 829 aa16.66■□□□□ 0.26
PTPRF-202ENST00000372405 NFIXQ14938 502 aa16.66■□□□□ 0.26
PTPRF-202ENST00000372405 CCDC158Q5M9N0 1113 aa16.66■□□□□ 0.26
PTPRF-202ENST00000372405 TTC39AQ5SRH9 613 aa16.66■□□□□ 0.26
PTPRF-202ENST00000372405 GORABQ5T7V8 394 aa16.66■□□□□ 0.26
PTPRF-202ENST00000372405 CCDC171Q6TFL3 1326 aa16.65■□□□□ 0.26
PTPRF-202ENST00000372405 TNS1Q9HBL0 1735 aaKnown RBP16.65■□□□□ 0.26
PTPRF-202ENST00000372405 K7ELQ4 463 aaPredicted RBP16.65■□□□□ 0.26
PTPRF-202ENST00000372405 TAF5LO75529 589 aa16.65■□□□□ 0.26
PTPRF-202ENST00000372405 GTF2E1P29083 439 aaPredicted RBP16.65■□□□□ 0.26
PTPRF-202ENST00000372405 PUM3Q15397 648 aaKnown RBP16.65■□□□□ 0.26
PTPRF-202ENST00000372405 SLFNL1Q499Z3 407 aa16.65■□□□□ 0.26
PTPRF-202ENST00000372405 KIAA1211Q6ZU35 1233 aa16.65■□□□□ 0.26
PTPRF-202ENST00000372405 RASEFQ8IZ41 740 aa16.65■□□□□ 0.26
PTPRF-202ENST00000372405 IGHMBP2P38935 993 aaKnown RBP16.64■□□□□ 0.25
PTPRF-202ENST00000372405 PI16Q6UXB8 463 aa16.64■□□□□ 0.25
PTPRF-202ENST00000372405 SEC62Q99442 399 aaKnown RBP16.64■□□□□ 0.25
PTPRF-202ENST00000372405 MYO5AQ9Y4I1 1855 aaKnown RBP16.64■□□□□ 0.25
PTPRF-202ENST00000372405 GYS1P13807 737 aa16.64■□□□□ 0.25
PTPRF-202ENST00000372405 SSFA2P28290 1259 aa16.64■□□□□ 0.25
PTPRF-202ENST00000372405 MCAMP43121 646 aa16.64■□□□□ 0.25
PTPRF-202ENST00000372405 POTEAQ6S8J7 498 aa16.64■□□□□ 0.25
PTPRF-202ENST00000372405 TPTE2Q6XPS3 522 aa16.64■□□□□ 0.25
PTPRF-202ENST00000372405 LPIN2Q92539 896 aa16.64■□□□□ 0.25
PTPRF-202ENST00000372405 SNX14Q9Y5W7 946 aa16.64■□□□□ 0.25
PTPRF-202ENST00000372405 CARMIL3Q8ND23 1372 aa16.64■□□□□ 0.25
PTPRF-202ENST00000372405 MYH7P12883 1935 aa16.63■□□□□ 0.25
PTPRF-202ENST00000372405 PLSCR1O15162 318 aa16.63■□□□□ 0.25
PTPRF-202ENST00000372405 FKBP4Q02790 459 aaKnown RBP eCLIP16.63■□□□□ 0.251e-7■■■■■ 44.7
PTPRF-202ENST00000372405 MAP4K1Q92918 833 aa16.63■□□□□ 0.25
PTPRF-202ENST00000372405 CDC5LQ99459 802 aaKnown RBP16.63■□□□□ 0.25
PTPRF-202ENST00000372405 ZAP70P43403 619 aa16.62■□□□□ 0.25
PTPRF-202ENST00000372405 PHKA1P46020 1223 aa16.62■□□□□ 0.25
PTPRF-202ENST00000372405 CHRNDQ07001 517 aa16.62■□□□□ 0.25
PTPRF-202ENST00000372405 CCDC102BQ68D86 513 aa16.62■□□□□ 0.25
PTPRF-202ENST00000372405 CELF1Q92879 486 aaKnown RBP16.62■□□□□ 0.25
PTPRF-202ENST00000372405 ZNF512BQ96KM6 892 aaPredicted RBP16.62■□□□□ 0.25
PTPRF-202ENST00000372405 APBA3O96018 575 aa16.62■□□□□ 0.25
PTPRF-202ENST00000372405 DDIT3P35638 169 aa16.62■□□□□ 0.25
PTPRF-202ENST00000372405 NECTIN1Q15223 517 aa16.62■□□□□ 0.25
PTPRF-202ENST00000372405 ZNF827Q17R98 1081 aa16.62■□□□□ 0.25
PTPRF-202ENST00000372405 CCDC129Q6ZRS4 1044 aa16.62■□□□□ 0.25
PTPRF-202ENST00000372405 KCNB2Q92953 911 aa16.62■□□□□ 0.25
PTPRF-202ENST00000372405 TM4SF1P30408 202 aa16.61■□□□□ 0.25
PTPRF-202ENST00000372405 NEK4P51957 841 aa16.61■□□□□ 0.25
PTPRF-202ENST00000372405 ANKRD18AQ8IVF6 992 aa16.61■□□□□ 0.25
PTPRF-202ENST00000372405 NLRP3Q96P20 1036 aa16.61■□□□□ 0.25
PTPRF-202ENST00000372405 RBM8AQ9Y5S9 174 aaKnown RBP16.61■□□□□ 0.25
PTPRF-202ENST00000372405 WTIPA6NIX2 430 aaPredicted RBP16.6■□□□□ 0.25
PTPRF-202ENST00000372405 ST18O60284 1047 aa16.6■□□□□ 0.25
PTPRF-202ENST00000372405 ARID4AP29374 1257 aaPredicted RBP16.6■□□□□ 0.25
PTPRF-202ENST00000372405 PRPF40BQ6NWY9 871 aaKnown RBP16.6■□□□□ 0.25
PTPRF-202ENST00000372405 TICAM2Q86XR7 235 aa16.6■□□□□ 0.25
PTPRF-202ENST00000372405 UPF3BQ9BZI7 483 aaKnown RBP16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms