RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 CCDC57Q2TAC2 916 aa24.77■■□□□ 1.56
CCDC88B-203ENST00000359902 CCDC183Q5T5S1 534 aa24.77■■□□□ 1.56
CCDC88B-203ENST00000359902 IFIT1P09914 478 aaKnown RBP24.77■■□□□ 1.56
CCDC88B-203ENST00000359902 PDCP20941 246 aa24.77■■□□□ 1.56
CCDC88B-203ENST00000359902 ZMYM1Q5SVZ6 1142 aa24.77■■□□□ 1.56
CCDC88B-203ENST00000359902 RNF214Q8ND24 703 aa24.77■■□□□ 1.56
CCDC88B-203ENST00000359902 CEP126Q9P2H0 1117 aa24.77■■□□□ 1.56
CCDC88B-203ENST00000359902 STK3Q13188 491 aa24.76■■□□□ 1.55
CCDC88B-203ENST00000359902 CSPP1Q1MSJ5 1256 aa24.76■■□□□ 1.55
CCDC88B-203ENST00000359902 KIF6Q6ZMV9 814 aa24.76■■□□□ 1.55
CCDC88B-203ENST00000359902 PCCAP05165 728 aaPredicted RBP24.75■■□□□ 1.55
CCDC88B-203ENST00000359902 FAM89AQ96GI7 184 aa24.75■■□□□ 1.55
CCDC88B-203ENST00000359902 STARD3NLO95772 234 aa24.75■■□□□ 1.55
CCDC88B-203ENST00000359902 CDC37L1Q7L3B6 337 aa24.75■■□□□ 1.55
CCDC88B-203ENST00000359902 PLA2G12BQ9BX93 195 aa24.75■■□□□ 1.55
CCDC88B-203ENST00000359902 Q6ZUG5 572 aa24.74■■□□□ 1.55
CCDC88B-203ENST00000359902 PPIL4Q8WUA2 492 aaKnown RBP eCLIP24.74■■□□□ 1.55
CCDC88B-203ENST00000359902 DSCC1Q9BVC3 393 aa24.74■■□□□ 1.55
CCDC88B-203ENST00000359902 FBXO3Q9UK99 471 aa24.74■■□□□ 1.55
CCDC88B-203ENST00000359902 STOX1Q6ZVD7 989 aa24.74■■□□□ 1.55
CCDC88B-203ENST00000359902 CSF1RP07333 972 aa24.73■■□□□ 1.55
CCDC88B-203ENST00000359902 TPRNQ4KMQ1 711 aa24.73■■□□□ 1.55
CCDC88B-203ENST00000359902 HS1BP3Q53T59 392 aa24.73■■□□□ 1.55
CCDC88B-203ENST00000359902 ZSCAN30Q86W11 494 aa24.73■■□□□ 1.55
CCDC88B-203ENST00000359902 ZBTB38Q8NAP3 1195 aaPredicted RBP24.73■■□□□ 1.55
CCDC88B-203ENST00000359902 RNF113AO15541 343 aaKnown RBP24.73■■□□□ 1.55
CCDC88B-203ENST00000359902 GTF3C6Q969F1 213 aa24.73■■□□□ 1.55
CCDC88B-203ENST00000359902 LETM1O95202 739 aaPredicted RBP24.72■■□□□ 1.55
CCDC88B-203ENST00000359902 MAP3K15Q6ZN16 1313 aa24.72■■□□□ 1.55
CCDC88B-203ENST00000359902 FERMT3Q86UX7 667 aa24.72■■□□□ 1.55
CCDC88B-203ENST00000359902 GIGYF2Q6Y7W6 1299 aaKnown RBP24.71■■□□□ 1.55
CCDC88B-203ENST00000359902 CCDC85AQ96PX6 553 aaPredicted RBP24.71■■□□□ 1.55
CCDC88B-203ENST00000359902 AKAP2Q9Y2D5 859 aa24.71■■□□□ 1.55
CCDC88B-203ENST00000359902 MAST3O60307 1309 aa24.7■■□□□ 1.54
CCDC88B-203ENST00000359902 ITGB4P16144 1822 aa24.7■■□□□ 1.54
CCDC88B-203ENST00000359902 HMGB1P09429 215 aaKnown RBP24.7■■□□□ 1.54
CCDC88B-203ENST00000359902 HSPD1P10809 573 aaKnown RBP24.7■■□□□ 1.54
CCDC88B-203ENST00000359902 ADORA1P30542 326 aa24.7■■□□□ 1.54
CCDC88B-203ENST00000359902 HLFQ16534 295 aa24.7■■□□□ 1.54
CCDC88B-203ENST00000359902 XAGE2Q96GT9 111 aa24.7■■□□□ 1.54
CCDC88B-203ENST00000359902 SPEF2Q9C093 1822 aa24.7■■□□□ 1.54
CCDC88B-203ENST00000359902 DISP2A7MBM2 1401 aa24.7■■□□□ 1.54
CCDC88B-203ENST00000359902 CCDC158Q5M9N0 1113 aa24.69■■□□□ 1.54
CCDC88B-203ENST00000359902 SYNE4Q8N205 404 aa24.69■■□□□ 1.54
CCDC88B-203ENST00000359902 SLC4A9Q96Q91 983 aa24.69■■□□□ 1.54
CCDC88B-203ENST00000359902 JAK2O60674 1132 aa24.69■■□□□ 1.54
CCDC88B-203ENST00000359902 KRT85P78386 507 aa24.69■■□□□ 1.54
CCDC88B-203ENST00000359902 IFIT5Q13325 482 aaKnown RBP24.69■■□□□ 1.54
CCDC88B-203ENST00000359902 DHX32Q7L7V1 743 aaKnown RBP24.69■■□□□ 1.54
CCDC88B-203ENST00000359902 BRF1Q92994 677 aa24.69■■□□□ 1.54
CCDC88B-203ENST00000359902 FKBP4Q02790 459 aaKnown RBP eCLIP24.68■■□□□ 1.54
CCDC88B-203ENST00000359902 FAM173BQ6P4H8 233 aa24.68■■□□□ 1.54
CCDC88B-203ENST00000359902 LRRC2Q9BYS8 371 aa24.68■■□□□ 1.54
CCDC88B-203ENST00000359902 BCL9O00512 1426 aa24.68■■□□□ 1.54
CCDC88B-203ENST00000359902 CYP19A1P11511 503 aaPredicted RBP24.68■■□□□ 1.54
CCDC88B-203ENST00000359902 HSP90B1P14625 803 aaKnown RBP24.68■■□□□ 1.54
CCDC88B-203ENST00000359902 GORABQ5T7V8 394 aa24.68■■□□□ 1.54
CCDC88B-203ENST00000359902 TTC6Q86TZ1 520 aa24.68■■□□□ 1.54
CCDC88B-203ENST00000359902 A0A0G2JLW4 131 aa24.67■■□□□ 1.54
CCDC88B-203ENST00000359902 M0R2C6 588 aa24.67■■□□□ 1.54
CCDC88B-203ENST00000359902 EXOSC10Q01780 885 aaKnown RBP24.67■■□□□ 1.54
CCDC88B-203ENST00000359902 TAF7LQ5H9L4 462 aa24.67■■□□□ 1.54
CCDC88B-203ENST00000359902 TTC39AQ5SRH9 613 aa24.67■■□□□ 1.54
CCDC88B-203ENST00000359902 NLRP10Q86W26 655 aa24.67■■□□□ 1.54
CCDC88B-203ENST00000359902 FAM184AQ8NB25 1140 aa24.67■■□□□ 1.54
CCDC88B-203ENST00000359902 CDHR2Q9BYE9 1310 aa24.67■■□□□ 1.54
CCDC88B-203ENST00000359902 GPTP24298 496 aa24.66■■□□□ 1.54
CCDC88B-203ENST00000359902 OSBP2Q969R2 916 aa24.66■■□□□ 1.54
CCDC88B-203ENST00000359902 ELP1O95163 1332 aa24.66■■□□□ 1.54
CCDC88B-203ENST00000359902 SCRN1Q12765 414 aa24.66■■□□□ 1.54
CCDC88B-203ENST00000359902 LAMA4Q16363 1823 aa24.65■■□□□ 1.54
CCDC88B-203ENST00000359902 E7EWF7 191 aa24.65■■□□□ 1.54
CCDC88B-203ENST00000359902 FGD1P98174 961 aa24.65■■□□□ 1.54
CCDC88B-203ENST00000359902 KLHL34Q8N239 644 aa24.65■■□□□ 1.54
CCDC88B-203ENST00000359902 NOL7Q9UMY1 257 aaKnown RBP24.65■■□□□ 1.54
CCDC88B-203ENST00000359902 RIPOR2Q9Y4F9 1068 aa24.65■■□□□ 1.54
CCDC88B-203ENST00000359902 PFKFB2O60825 505 aa24.64■■□□□ 1.54
CCDC88B-203ENST00000359902 SCARF1Q14162 830 aa24.64■■□□□ 1.54
CCDC88B-203ENST00000359902 UVSSAQ2YD98 709 aa24.64■■□□□ 1.54
CCDC88B-203ENST00000359902 TTLL11Q8NHH1 800 aa24.64■■□□□ 1.54
CCDC88B-203ENST00000359902 AGXT2Q9BYV1 514 aa24.64■■□□□ 1.54
CCDC88B-203ENST00000359902 HSP90AB3PQ58FF7 597 aa24.64■■□□□ 1.53
CCDC88B-203ENST00000359902 LRRFIP1Q32MZ4 808 aaKnown RBP24.63■■□□□ 1.53
CCDC88B-203ENST00000359902 SMARCC2Q8TAQ2 1214 aa24.63■■□□□ 1.53
CCDC88B-203ENST00000359902 UBE2Q2Q8WVN8 375 aa24.63■■□□□ 1.53
CCDC88B-203ENST00000359902 FUCA2Q9BTY2 467 aa24.63■■□□□ 1.53
CCDC88B-203ENST00000359902 MSNP26038 577 aaKnown RBP24.63■■□□□ 1.53
CCDC88B-203ENST00000359902 GIMAP6Q6P9H5 292 aa24.63■■□□□ 1.53
CCDC88B-203ENST00000359902 LLPHQ9BRT6 129 aaKnown RBP24.63■■□□□ 1.53
CCDC88B-203ENST00000359902 GREM2Q9H772 168 aa24.63■■□□□ 1.53
CCDC88B-203ENST00000359902 ZBTB1Q9Y2K1 713 aa24.63■■□□□ 1.53
CCDC88B-203ENST00000359902 TNKS1BP1Q9C0C2 1729 aaKnown RBP24.63■■□□□ 1.53
CCDC88B-203ENST00000359902 COL14A1Q05707 1796 aaKnown RBP24.62■■□□□ 1.53
CCDC88B-203ENST00000359902 EXOC5O00471 708 aa24.62■■□□□ 1.53
CCDC88B-203ENST00000359902 ITGA6P23229 1130 aa24.62■■□□□ 1.53
CCDC88B-203ENST00000359902 SCAND2PQ9GZW5 306 aaPredicted RBP24.62■■□□□ 1.53
CCDC88B-203ENST00000359902 EIF2AK3Q9NZJ5 1116 aaKnown RBP24.62■■□□□ 1.53
CCDC88B-203ENST00000359902 ZFYP08048 801 aaPredicted RBP24.62■■□□□ 1.53
CCDC88B-203ENST00000359902 ZAP70P43403 619 aa24.62■■□□□ 1.53
CCDC88B-203ENST00000359902 TTLL5Q6EMB2 1281 aa24.62■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 76.5 ms