RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 DIEXFQ68CQ4 756 aaKnown RBP23.37■■□□□ 1.33
CLN3-202ENST00000355477 CIAPIN1Q6FI81 312 aa23.37■■□□□ 1.33
CLN3-202ENST00000355477 PNMA8AQ86V59 439 aaPredicted RBP23.37■■□□□ 1.33
CLN3-202ENST00000355477 WTIPA6NIX2 430 aaPredicted RBP23.36■■□□□ 1.33
CLN3-202ENST00000355477 UFL1O94874 794 aa23.36■■□□□ 1.33
CLN3-202ENST00000355477 DOK7Q18PE1 504 aa23.36■■□□□ 1.33
CLN3-202ENST00000355477 SSH1Q8WYL5 1049 aa23.36■■□□□ 1.33
CLN3-202ENST00000355477 EYA3Q99504 573 aa23.36■■□□□ 1.33
CLN3-202ENST00000355477 KCNQ5Q9NR82 932 aa23.36■■□□□ 1.33
CLN3-202ENST00000355477 BSDC1Q9NW68 430 aaPredicted RBP23.36■■□□□ 1.33
CLN3-202ENST00000355477 GGA1Q9UJY5 639 aa23.36■■□□□ 1.33
CLN3-202ENST00000355477 PCNTO95613 3336 aa23.35■■□□□ 1.33
CLN3-202ENST00000355477 GMPSP49915 693 aaPredicted RBP23.35■■□□□ 1.33
CLN3-202ENST00000355477 TNIP1Q15025 636 aa23.35■■□□□ 1.33
CLN3-202ENST00000355477 FAM161AQ3B820 660 aa23.35■■□□□ 1.33
CLN3-202ENST00000355477 SLC4A10Q6U841 1118 aa23.35■■□□□ 1.33
CLN3-202ENST00000355477 GPRC5DQ9NZD1 345 aa23.35■■□□□ 1.33
CLN3-202ENST00000355477 MINPP1Q9UNW1 487 aa23.35■■□□□ 1.33
CLN3-202ENST00000355477 XDHP47989 1333 aa23.34■■□□□ 1.33
CLN3-202ENST00000355477 ITGBL1O95965 494 aaPredicted RBP23.34■■□□□ 1.33
CLN3-202ENST00000355477 ITGA6P23229 1130 aa23.34■■□□□ 1.33
CLN3-202ENST00000355477 FOXO4P98177 505 aa23.34■■□□□ 1.33
CLN3-202ENST00000355477 ZC3H12CQ9C0D7 883 aaKnown RBP23.34■■□□□ 1.33
CLN3-202ENST00000355477 PASKQ96RG2 1323 aa23.33■■□□□ 1.33
CLN3-202ENST00000355477 ECE2O60344 883 aa23.33■■□□□ 1.33
CLN3-202ENST00000355477 BCL2L13Q9BXK5 485 aa23.33■■□□□ 1.33
CLN3-202ENST00000355477 GRM8O00222 908 aa23.32■■□□□ 1.32
CLN3-202ENST00000355477 ALDH1L1O75891 902 aa23.32■■□□□ 1.32
CLN3-202ENST00000355477 EPHA10Q5JZY3 1008 aa23.32■■□□□ 1.32
CLN3-202ENST00000355477 MAP1SQ66K74 1059 aaPredicted RBP23.32■■□□□ 1.32
CLN3-202ENST00000355477 SRCIN1Q9C0H9 1055 aa23.32■■□□□ 1.32
CLN3-202ENST00000355477 PSME4Q14997 1843 aa23.31■■□□□ 1.32
CLN3-202ENST00000355477 SHTN1A0MZ66 631 aa23.31■■□□□ 1.32
CLN3-202ENST00000355477 PSMD14O00487 310 aa23.31■■□□□ 1.32
CLN3-202ENST00000355477 CNTROBQ8N137 903 aa23.31■■□□□ 1.32
CLN3-202ENST00000355477 KLRG1Q96E93 195 aa23.31■■□□□ 1.32
CLN3-202ENST00000355477 C9orf78Q9NZ63 289 aaPredicted RBP23.31■■□□□ 1.32
CLN3-202ENST00000355477 ZBTB12Q9Y330 459 aaPredicted RBP23.31■■□□□ 1.32
CLN3-202ENST00000355477 ATP2B4P23634 1241 aa23.3■■□□□ 1.32
CLN3-202ENST00000355477 IGHMBP2P38935 993 aaKnown RBP23.3■■□□□ 1.32
CLN3-202ENST00000355477 USP50Q70EL3 339 aaPredicted RBP23.3■■□□□ 1.32
CLN3-202ENST00000355477 ADARB2Q9NS39 739 aaKnown RBP23.3■■□□□ 1.32
CLN3-202ENST00000355477 CNOT7Q9UIV1 285 aaKnown RBP23.29■■□□□ 1.32
CLN3-202ENST00000355477 A0A1B0GUL6 1792 aa23.29■■□□□ 1.32
CLN3-202ENST00000355477 PTPRCP08575 1304 aa23.29■■□□□ 1.32
CLN3-202ENST00000355477 POLR2AP24928 1970 aaKnown RBP23.29■■□□□ 1.32
CLN3-202ENST00000355477 ANKRD18BA2A2Z9 1011 aa23.28■■□□□ 1.32
CLN3-202ENST00000355477 CCT4P50991 539 aaKnown RBP23.28■■□□□ 1.32
CLN3-202ENST00000355477 ALDH1L2Q3SY69 923 aa23.28■■□□□ 1.32
CLN3-202ENST00000355477 LMBR1LQ6UX01 489 aa23.28■■□□□ 1.32
CLN3-202ENST00000355477 G3V3G9 751 aa23.27■■□□□ 1.32
CLN3-202ENST00000355477 NBPF7P0C2Y1 421 aaPredicted RBP23.27■■□□□ 1.32
CLN3-202ENST00000355477 DCAF8Q5TAQ9 597 aa23.27■■□□□ 1.32
CLN3-202ENST00000355477 MPHOSPH8Q99549 860 aa23.27■■□□□ 1.32
CLN3-202ENST00000355477 CREBZFQ9NS37 354 aa23.27■■□□□ 1.32
CLN3-202ENST00000355477 CHMP3Q9Y3E7 222 aa23.27■■□□□ 1.32
CLN3-202ENST00000355477 HIRAP54198 1017 aaPredicted RBP23.26■■□□□ 1.31
CLN3-202ENST00000355477 DPF2Q92785 391 aa23.26■■□□□ 1.31
CLN3-202ENST00000355477 KAZALD1Q96I82 304 aa23.26■■□□□ 1.31
CLN3-202ENST00000355477 SMC4Q9NTJ3 1288 aa23.26■■□□□ 1.31
CLN3-202ENST00000355477 TRPM7Q96QT4 1865 aa23.26■■□□□ 1.31
CLN3-202ENST00000355477 VIL1P09327 827 aaKnown RBP23.25■■□□□ 1.31
CLN3-202ENST00000355477 FMR1Q06787 632 aaKnown RBP eCLIP23.25■■□□□ 1.31
CLN3-202ENST00000355477 IFIT5Q13325 482 aaKnown RBP23.25■■□□□ 1.31
CLN3-202ENST00000355477 MICALL2Q8IY33 904 aa23.25■■□□□ 1.31
CLN3-202ENST00000355477 TRPM4Q8TD43 1214 aa23.25■■□□□ 1.31
CLN3-202ENST00000355477 SUCLG2Q96I99 432 aa23.25■■□□□ 1.31
CLN3-202ENST00000355477 UTYO14607 1347 aa23.25■■□□□ 1.31
CLN3-202ENST00000355477 TXNRD3Q86VQ6 643 aa23.24■■□□□ 1.31
CLN3-202ENST00000355477 ZNF594Q96JF6 807 aaPredicted RBP23.24■■□□□ 1.31
CLN3-202ENST00000355477 ANKRD2Q9GZV1 360 aa23.24■■□□□ 1.31
CLN3-202ENST00000355477 LEMD3Q9Y2U8 911 aa23.24■■□□□ 1.31
CLN3-202ENST00000355477 MED23Q9ULK4 1368 aa23.24■■□□□ 1.31
CLN3-202ENST00000355477 ZNF646O15015 1829 aaPredicted RBP23.24■■□□□ 1.31
CLN3-202ENST00000355477 H7C1D1 291 aa23.23■■□□□ 1.31
CLN3-202ENST00000355477 CT47B1P0C2W7 299 aaPredicted RBP23.23■■□□□ 1.31
CLN3-202ENST00000355477 CHRNDQ07001 517 aa23.23■■□□□ 1.31
CLN3-202ENST00000355477 JMYQ8N9B5 988 aa23.23■■□□□ 1.31
CLN3-202ENST00000355477 TMEM88BA6NKF7 163 aa23.22■■□□□ 1.31
CLN3-202ENST00000355477 RPS12P25398 132 aaKnown RBP23.22■■□□□ 1.31
CLN3-202ENST00000355477 SAMD7Q7Z3H4 446 aa23.22■■□□□ 1.31
CLN3-202ENST00000355477 HELBQ8NG08 1087 aaPredicted RBP23.22■■□□□ 1.31
CLN3-202ENST00000355477 PGAP2Q9UHJ9 254 aa23.22■■□□□ 1.31
CLN3-202ENST00000355477 ZNF804BA4D1E1 1349 aa23.22■■□□□ 1.31
CLN3-202ENST00000355477 SNAP23O00161 211 aa23.21■■□□□ 1.31
CLN3-202ENST00000355477 TRAF5O00463 557 aa23.21■■□□□ 1.31
CLN3-202ENST00000355477 TAF5LO75529 589 aa23.21■■□□□ 1.31
CLN3-202ENST00000355477 EGFRP00533 1210 aa23.21■■□□□ 1.31
CLN3-202ENST00000355477 KLRK1P26718 216 aa23.21■■□□□ 1.31
CLN3-202ENST00000355477 CCDC57Q2TAC2 916 aa23.21■■□□□ 1.31
CLN3-202ENST00000355477 PODNQ7Z5L7 613 aa23.21■■□□□ 1.31
CLN3-202ENST00000355477 TBC1D10BQ4KMP7 808 aaPredicted RBP23.2■■□□□ 1.3
CLN3-202ENST00000355477 USP44Q9H0E7 712 aa23.2■■□□□ 1.3
CLN3-202ENST00000355477 MKRN1Q9UHC7 482 aaKnown RBP23.2■■□□□ 1.3
CLN3-202ENST00000355477 NOB1Q9ULX3 412 aaKnown RBP23.2■■□□□ 1.3
CLN3-202ENST00000355477 RARSP54136 660 aaKnown RBP23.19■■□□□ 1.3
CLN3-202ENST00000355477 BRPF1P55201 1214 aaPredicted RBP23.19■■□□□ 1.3
CLN3-202ENST00000355477 RSBN1LQ6PCB5 846 aaPredicted RBP23.19■■□□□ 1.3
CLN3-202ENST00000355477 BICC1Q9H694 974 aaKnown RBP23.19■■□□□ 1.3
CLN3-202ENST00000355477 USP17L3A6NCW0 530 aa23.18■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms