RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 CYP21A2P08686 494 aa12.32□□□□□ -0.44
LIMA1-201ENST00000341247 HLFQ16534 295 aa12.32□□□□□ -0.44
LIMA1-201ENST00000341247 JAK2O60674 1132 aa12.32□□□□□ -0.44
LIMA1-201ENST00000341247 PI16Q6UXB8 463 aa12.32□□□□□ -0.44
LIMA1-201ENST00000341247 KCNB2Q92953 911 aa12.32□□□□□ -0.44
LIMA1-201ENST00000341247 CEP126Q9P2H0 1117 aa12.32□□□□□ -0.44
LIMA1-201ENST00000341247 ROBO1Q9Y6N7 1651 aa12.32□□□□□ -0.44
LIMA1-201ENST00000341247 KIF6Q6ZMV9 814 aa12.32□□□□□ -0.44
LIMA1-201ENST00000341247 Q6ZUG5 572 aa12.32□□□□□ -0.44
LIMA1-201ENST00000341247 KBTBD3Q8NAB2 608 aa12.32□□□□□ -0.44
LIMA1-201ENST00000341247 NAP1L5Q96NT1 182 aaPredicted RBP12.32□□□□□ -0.44
LIMA1-201ENST00000341247 NEK1Q96PY6 1258 aa12.32□□□□□ -0.44
LIMA1-201ENST00000341247 TFIP11Q9UBB9 837 aaKnown RBP12.32□□□□□ -0.44
LIMA1-201ENST00000341247 IL15P40933 162 aaPredicted RBP12.31□□□□□ -0.44
LIMA1-201ENST00000341247 ATG3Q9NT62 314 aa12.31□□□□□ -0.44
LIMA1-201ENST00000341247 TCIRG1Q13488 830 aa12.31□□□□□ -0.44
LIMA1-201ENST00000341247 BRF1Q92994 677 aa12.31□□□□□ -0.44
LIMA1-201ENST00000341247 TBC1D2BQ9UPU7 963 aa12.31□□□□□ -0.44
LIMA1-201ENST00000341247 PLCB2Q00722 1185 aa12.31□□□□□ -0.44
LIMA1-201ENST00000341247 TTLL5Q6EMB2 1281 aa12.31□□□□□ -0.44
LIMA1-201ENST00000341247 SYAP1Q96A49 352 aaPredicted RBP12.31□□□□□ -0.44
LIMA1-201ENST00000341247 TSPY26PQ9H489 355 aa12.31□□□□□ -0.44
LIMA1-201ENST00000341247 UTRNP46939 3433 aa12.3□□□□□ -0.44
LIMA1-201ENST00000341247 HAND2P61296 217 aa12.3□□□□□ -0.44
LIMA1-201ENST00000341247 WASHC4Q2M389 1173 aa12.3□□□□□ -0.44
LIMA1-201ENST00000341247 STOX1Q6ZVD7 989 aa12.3□□□□□ -0.44
LIMA1-201ENST00000341247 ADAMTS2O95450 1211 aa12.29□□□□□ -0.44
LIMA1-201ENST00000341247 TTC39AQ5SRH9 613 aa12.29□□□□□ -0.44
LIMA1-201ENST00000341247 GIMAP6Q6P9H5 292 aa12.29□□□□□ -0.44
LIMA1-201ENST00000341247 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.29□□□□□ -0.44
LIMA1-201ENST00000341247 CCT2P78371 535 aaKnown RBP12.29□□□□□ -0.44
LIMA1-201ENST00000341247 SCARF1Q14162 830 aa12.29□□□□□ -0.44
LIMA1-201ENST00000341247 ATP6V1DQ9Y5K8 247 aa12.29□□□□□ -0.44
LIMA1-201ENST00000341247 SLIT2O94813 1529 aa12.29□□□□□ -0.44
LIMA1-201ENST00000341247 STARD3NLO95772 234 aa12.29□□□□□ -0.44
LIMA1-201ENST00000341247 ZBTB1Q9Y2K1 713 aa12.29□□□□□ -0.44
LIMA1-201ENST00000341247 DISP2A7MBM2 1401 aa12.29□□□□□ -0.44
LIMA1-201ENST00000341247 CEBPZQ03701 1054 aaKnown RBP12.28□□□□□ -0.44
LIMA1-201ENST00000341247 IFIT5Q13325 482 aaKnown RBP12.28□□□□□ -0.44
LIMA1-201ENST00000341247 ACSBG1Q96GR2 724 aa12.28□□□□□ -0.44
LIMA1-201ENST00000341247 XAGE2Q96GT9 111 aa12.28□□□□□ -0.44
LIMA1-201ENST00000341247 HMG20BQ9P0W2 317 aa12.28□□□□□ -0.44
LIMA1-201ENST00000341247 U3KPZ7 1027 aaPredicted RBP12.28□□□□□ -0.44
LIMA1-201ENST00000341247 CLCN1P35523 988 aa12.28□□□□□ -0.44
LIMA1-201ENST00000341247 RAB11FIP4Q86YS3 637 aa12.28□□□□□ -0.44
LIMA1-201ENST00000341247 PPP1R9BQ96SB3 815 aa12.28□□□□□ -0.44
LIMA1-201ENST00000341247 ISCA1Q9BUE6 129 aa12.28□□□□□ -0.44
LIMA1-201ENST00000341247 HCLS1P14317 486 aaPredicted RBP12.28□□□□□ -0.44
LIMA1-201ENST00000341247 APOBRQ0VD83 1088 aa12.28□□□□□ -0.44
LIMA1-201ENST00000341247 ANKRD1Q15327 319 aa12.28□□□□□ -0.44
LIMA1-201ENST00000341247 M0R2C6 588 aa12.27□□□□□ -0.44
LIMA1-201ENST00000341247 UBE2HP62256 183 aa12.27□□□□□ -0.44
LIMA1-201ENST00000341247 CAMK4Q16566 473 aa12.27□□□□□ -0.44
LIMA1-201ENST00000341247 HELBQ8NG08 1087 aaPredicted RBP12.27□□□□□ -0.44
LIMA1-201ENST00000341247 GREM2Q9H772 168 aa12.27□□□□□ -0.44
LIMA1-201ENST00000341247 NCOA5Q9HCD5 579 aaKnown RBP12.27□□□□□ -0.44
LIMA1-201ENST00000341247 METTL24Q5JXM2 366 aa12.27□□□□□ -0.45
LIMA1-201ENST00000341247 CCDC158Q5M9N0 1113 aa12.27□□□□□ -0.45
LIMA1-201ENST00000341247 HSPD1P10809 573 aaKnown RBP12.27□□□□□ -0.45
LIMA1-201ENST00000341247 ZAP70P43403 619 aa12.27□□□□□ -0.45
LIMA1-201ENST00000341247 LDHAL6AQ6ZMR3 332 aa12.27□□□□□ -0.45
LIMA1-201ENST00000341247 OSBP2Q969R2 916 aa12.27□□□□□ -0.45
LIMA1-201ENST00000341247 GPHNQ9NQX3 736 aaPredicted RBP12.27□□□□□ -0.45
LIMA1-201ENST00000341247 CNNM1Q9NRU3 951 aa12.27□□□□□ -0.45
LIMA1-201ENST00000341247 TRMT112Q9UI30 125 aaKnown RBP12.27□□□□□ -0.45
LIMA1-201ENST00000341247 MAST3O60307 1309 aa12.27□□□□□ -0.45
LIMA1-201ENST00000341247 KRT32Q14532 448 aa12.26□□□□□ -0.45
LIMA1-201ENST00000341247 CCDC183Q5T5S1 534 aa12.26□□□□□ -0.45
LIMA1-201ENST00000341247 USPL1Q5W0Q7 1092 aa12.26□□□□□ -0.45
LIMA1-201ENST00000341247 TTC6Q86TZ1 520 aa12.26□□□□□ -0.45
LIMA1-201ENST00000341247 SNAP23O00161 211 aa12.26□□□□□ -0.45
LIMA1-201ENST00000341247 RNF113AO15541 343 aaKnown RBP12.26□□□□□ -0.45
LIMA1-201ENST00000341247 PTMAP06454 111 aaKnown RBP12.26□□□□□ -0.45
LIMA1-201ENST00000341247 ITGA6P23229 1130 aa12.26□□□□□ -0.45
LIMA1-201ENST00000341247 MSNP26038 577 aaKnown RBP12.26□□□□□ -0.45
LIMA1-201ENST00000341247 GUCY1B3Q02153 619 aa12.26□□□□□ -0.45
LIMA1-201ENST00000341247 H3BQV1 296 aa12.26□□□□□ -0.45
LIMA1-201ENST00000341247 EXOC5O00471 708 aa12.26□□□□□ -0.45
LIMA1-201ENST00000341247 IFFO2Q5TF58 517 aa12.26□□□□□ -0.45
LIMA1-201ENST00000341247 PLEKHG2Q9H7P9 1386 aa12.25□□□□□ -0.45
LIMA1-201ENST00000341247 ZMYM1Q5SVZ6 1142 aa12.25□□□□□ -0.45
LIMA1-201ENST00000341247 FAM184AQ8NB25 1140 aa12.25□□□□□ -0.45
LIMA1-201ENST00000341247 USP25Q9UHP3 1055 aa12.25□□□□□ -0.45
LIMA1-201ENST00000341247 NUTM2BA6NNL0 878 aaPredicted RBP12.25□□□□□ -0.45
LIMA1-201ENST00000341247 NUTM2EB1AL46 878 aaPredicted RBP12.25□□□□□ -0.45
LIMA1-201ENST00000341247 PHF14O94880 888 aa12.25□□□□□ -0.45
LIMA1-201ENST00000341247 KRT85P78386 507 aa12.25□□□□□ -0.45
LIMA1-201ENST00000341247 SCRN1Q12765 414 aa12.25□□□□□ -0.45
LIMA1-201ENST00000341247 SMIM5Q71RC9 77 aa12.25□□□□□ -0.45
LIMA1-201ENST00000341247 NUTM2AQ8IVF1 878 aaPredicted RBP12.25□□□□□ -0.45
LIMA1-201ENST00000341247 ZBTB38Q8NAP3 1195 aaPredicted RBP12.25□□□□□ -0.45
LIMA1-201ENST00000341247 GOLGA6L4A6NEF3 574 aa12.25□□□□□ -0.45
LIMA1-201ENST00000341247 GTF3C6Q969F1 213 aa12.25□□□□□ -0.45
LIMA1-201ENST00000341247 MAP3K15Q6ZN16 1313 aa12.25□□□□□ -0.45
LIMA1-201ENST00000341247 IRS4O14654 1257 aaPredicted RBP12.24□□□□□ -0.45
LIMA1-201ENST00000341247 PCCAP05165 728 aaPredicted RBP12.24□□□□□ -0.45
LIMA1-201ENST00000341247 GIGYF2Q6Y7W6 1299 aaKnown RBP12.24□□□□□ -0.45
LIMA1-201ENST00000341247 NLRP10Q86W26 655 aa12.24□□□□□ -0.45
LIMA1-201ENST00000341247 BCL9O00512 1426 aa12.24□□□□□ -0.45
LIMA1-201ENST00000341247 COL4A1P02462 1669 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 93.7 ms