RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 CCDC113Q9H0I3 377 aa11.71□□□□□ -0.54
CHD3-201ENST00000330494 GNPATO15228 680 aa11.71□□□□□ -0.54
CHD3-201ENST00000330494 CPA1P15085 419 aa11.71□□□□□ -0.54
CHD3-201ENST00000330494 KIF4BQ2VIQ3 1234 aa11.71□□□□□ -0.54
CHD3-201ENST00000330494 YTHDC2Q9H6S0 1430 aaKnown RBP11.71□□□□□ -0.54
CHD3-201ENST00000330494 SETD1BQ9UPS6 1966 aaKnown RBP11.71□□□□□ -0.54
CHD3-201ENST00000330494 CCDC40Q4G0X9 1142 aa11.71□□□□□ -0.54
CHD3-201ENST00000330494 JAKMIP3Q5VZ66 844 aa11.71□□□□□ -0.54
CHD3-201ENST00000330494 ZNF594Q96JF6 807 aaPredicted RBP11.71□□□□□ -0.54
CHD3-201ENST00000330494 HMG20BQ9P0W2 317 aa11.71□□□□□ -0.54
CHD3-201ENST00000330494 PUF60Q9UHX1 559 aaKnown RBP11.71□□□□□ -0.54
CHD3-201ENST00000330494 CLEC11AQ9Y240 323 aa11.71□□□□□ -0.54
CHD3-201ENST00000330494 HCLS1P14317 486 aaPredicted RBP11.7□□□□□ -0.54
CHD3-201ENST00000330494 GSTO1P78417 241 aa11.7□□□□□ -0.54
CHD3-201ENST00000330494 CCDC129Q6ZRS4 1044 aa11.7□□□□□ -0.54
CHD3-201ENST00000330494 ZBTB9Q96C00 473 aa11.7□□□□□ -0.54
CHD3-201ENST00000330494 PARD3Q8TEW0 1356 aa11.7□□□□□ -0.54
CHD3-201ENST00000330494 EHMT1Q9H9B1 1298 aa11.7□□□□□ -0.54
CHD3-201ENST00000330494 IL15P40933 162 aaPredicted RBP11.7□□□□□ -0.54
CHD3-201ENST00000330494 ZSCAN22P10073 491 aaPredicted RBP11.7□□□□□ -0.54
CHD3-201ENST00000330494 ARHGAP45Q92619 1136 aa11.7□□□□□ -0.54
CHD3-201ENST00000330494 ABCC10Q5T3U5 1492 aa11.7□□□□□ -0.54
CHD3-201ENST00000330494 STX1AQ16623 288 aa11.7□□□□□ -0.54
CHD3-201ENST00000330494 ZSCAN23Q3MJ62 389 aa11.7□□□□□ -0.54
CHD3-201ENST00000330494 NDUFB9Q9Y6M9 179 aa11.7□□□□□ -0.54
CHD3-201ENST00000330494 PRC1O43663 620 aa11.69□□□□□ -0.54
CHD3-201ENST00000330494 TIMM10P62072 90 aa11.69□□□□□ -0.54
CHD3-201ENST00000330494 DNM1Q05193 864 aaKnown RBP11.69□□□□□ -0.54
CHD3-201ENST00000330494 USP48Q86UV5 1035 aa11.69□□□□□ -0.54
CHD3-201ENST00000330494 KIF5CO60282 957 aa11.69□□□□□ -0.54
CHD3-201ENST00000330494 POTEJP0CG39 1038 aa11.69□□□□□ -0.54
CHD3-201ENST00000330494 KRT23Q9C075 422 aa11.69□□□□□ -0.54
CHD3-201ENST00000330494 UBXN4Q92575 508 aa11.69□□□□□ -0.54
CHD3-201ENST00000330494 MCM9Q9NXL9 1143 aa11.69□□□□□ -0.54
CHD3-201ENST00000330494 ERLIN1O75477 346 aa11.69□□□□□ -0.54
CHD3-201ENST00000330494 SEC24BO95487 1268 aa11.69□□□□□ -0.54
CHD3-201ENST00000330494 CCDC12Q8WUD4 166 aaPredicted RBP11.69□□□□□ -0.54
CHD3-201ENST00000330494 CALM1P0DP23 149 aa11.69□□□□□ -0.54
CHD3-201ENST00000330494 CALM2P0DP24 149 aa11.69□□□□□ -0.54
CHD3-201ENST00000330494 CALM3P0DP25 149 aa11.69□□□□□ -0.54
CHD3-201ENST00000330494 PDIA4P13667 645 aaKnown RBP11.69□□□□□ -0.54
CHD3-201ENST00000330494 SYKP43405 635 aa11.69□□□□□ -0.54
CHD3-201ENST00000330494 ZNF804AQ7Z570 1209 aa11.69□□□□□ -0.54
CHD3-201ENST00000330494 PDCL2Q8N4E4 241 aa11.69□□□□□ -0.54
CHD3-201ENST00000330494 IP6K1Q92551 441 aa11.69□□□□□ -0.54
CHD3-201ENST00000330494 ESR2Q92731 530 aa11.69□□□□□ -0.54
CHD3-201ENST00000330494 PLIN2Q99541 437 aa11.69□□□□□ -0.54
CHD3-201ENST00000330494 BCCIPQ9P287 314 aaKnown RBP eCLIP11.69□□□□□ -0.54
CHD3-201ENST00000330494 UHRF1BP1Q6BDS2 1440 aa11.69□□□□□ -0.54
CHD3-201ENST00000330494 DNMT1P26358 1616 aaKnown RBP11.69□□□□□ -0.54
CHD3-201ENST00000330494 BICD1Q96G01 975 aa11.68□□□□□ -0.54
CHD3-201ENST00000330494 GIMAP7Q8NHV1 300 aa11.68□□□□□ -0.54
CHD3-201ENST00000330494 CTAGE5O15320 804 aa11.68□□□□□ -0.54
CHD3-201ENST00000330494 ALDH1L1O75891 902 aa11.68□□□□□ -0.54
CHD3-201ENST00000330494 A1BGP04217 495 aa11.68□□□□□ -0.54
CHD3-201ENST00000330494 DESP17661 470 aa11.68□□□□□ -0.54
CHD3-201ENST00000330494 UBE2HP62256 183 aa11.68□□□□□ -0.54
CHD3-201ENST00000330494 ZSCAN30Q86W11 494 aa11.68□□□□□ -0.54
CHD3-201ENST00000330494 DDX19AQ9NUU7 478 aaKnown RBP11.68□□□□□ -0.54
CHD3-201ENST00000330494 PARP3Q9Y6F1 533 aa11.68□□□□□ -0.54
CHD3-201ENST00000330494 ZNF165P49910 485 aa11.68□□□□□ -0.54
CHD3-201ENST00000330494 PRPF4BQ13523 1007 aaKnown RBP11.68□□□□□ -0.54
CHD3-201ENST00000330494 OTUD7AQ8TE49 926 aaPredicted RBP11.68□□□□□ -0.54
CHD3-201ENST00000330494 MAST1Q9Y2H9 1570 aa11.68□□□□□ -0.54
CHD3-201ENST00000330494 NAPAP54920 295 aa11.68□□□□□ -0.54
CHD3-201ENST00000330494 OGFOD1Q8N543 542 aa11.68□□□□□ -0.54
CHD3-201ENST00000330494 STAT6P42226 847 aa11.67□□□□□ -0.54
CHD3-201ENST00000330494 FAM98CQ17RN3 349 aaKnown RBP11.67□□□□□ -0.54
CHD3-201ENST00000330494 IQCEQ6IPM2 695 aa11.67□□□□□ -0.54
CHD3-201ENST00000330494 SMARCC1Q92922 1105 aaPredicted RBP11.67□□□□□ -0.54
CHD3-201ENST00000330494 ZC3H12CQ9C0D7 883 aaKnown RBP11.67□□□□□ -0.54
CHD3-201ENST00000330494 ZSWIM4Q9H7M6 989 aa11.67□□□□□ -0.54
CHD3-201ENST00000330494 FGFR1OPO95684 399 aaKnown RBP11.67□□□□□ -0.54
CHD3-201ENST00000330494 HMGB2P26583 209 aaKnown RBP11.67□□□□□ -0.54
CHD3-201ENST00000330494 TPTE2Q6XPS3 522 aa11.67□□□□□ -0.54
CHD3-201ENST00000330494 NYXQ9GZU5 481 aa11.67□□□□□ -0.54
CHD3-201ENST00000330494 NOP2P46087 812 aaKnown RBP11.67□□□□□ -0.54
CHD3-201ENST00000330494 AK2P54819 239 aa11.67□□□□□ -0.54
CHD3-201ENST00000330494 ANO6Q4KMQ2 910 aa11.67□□□□□ -0.54
CHD3-201ENST00000330494 LINS1Q8NG48 757 aa11.67□□□□□ -0.54
CHD3-201ENST00000330494 EXOC1Q9NV70 894 aa11.67□□□□□ -0.54
CHD3-201ENST00000330494 ZBTB21Q9ULJ3 1066 aa11.67□□□□□ -0.54
CHD3-201ENST00000330494 POLR3AO14802 1390 aaPredicted RBP11.67□□□□□ -0.54
CHD3-201ENST00000330494 GBP2P32456 591 aaPredicted RBP11.67□□□□□ -0.54
CHD3-201ENST00000330494 CREB3L3Q68CJ9 461 aa11.67□□□□□ -0.54
CHD3-201ENST00000330494 CCDC102BQ68D86 513 aa11.67□□□□□ -0.54
CHD3-201ENST00000330494 ZGPATQ8N5A5 531 aaKnown RBP11.67□□□□□ -0.54
CHD3-201ENST00000330494 DCAF5Q96JK2 942 aa11.67□□□□□ -0.54
CHD3-201ENST00000330494 NUP160Q12769 1436 aa11.67□□□□□ -0.54
CHD3-201ENST00000330494 TMCO5BA8MYB1 307 aa11.67□□□□□ -0.54
CHD3-201ENST00000330494 CCDC150Q8NCX0 1101 aa11.67□□□□□ -0.54
CHD3-201ENST00000330494 PCDH11XQ9BZA7 1347 aa11.67□□□□□ -0.54
CHD3-201ENST00000330494 PCDH11YQ9BZA8 1340 aa11.67□□□□□ -0.54
CHD3-201ENST00000330494 TRIM47Q96LD4 638 aa11.67□□□□□ -0.54
CHD3-201ENST00000330494 RRAGBQ5VZM2 374 aa11.66□□□□□ -0.54
CHD3-201ENST00000330494 TTC16Q8NEE8 873 aa11.66□□□□□ -0.54
CHD3-201ENST00000330494 EIF3JO75822 258 aaKnown RBP11.66□□□□□ -0.54
CHD3-201ENST00000330494 ZFYP08048 801 aaPredicted RBP11.66□□□□□ -0.54
CHD3-201ENST00000330494 AMPD3Q01432 767 aa11.66□□□□□ -0.54
CHD3-201ENST00000330494 C8orf34Q49A92 452 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms