RNA–Protein interactions for RNA: ENST00000328560.12

ATP2C1-201, Transcript of ATPase secretory pathway Ca2+ transporting 1, humanhuman

TSL 1 (best) BASIC

Gene ATP2C1, Length 3,484 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATP2C1-201ENST00000328560 LRRC24Q50LG9 513 aa16.6■□□□□ 0.25
ATP2C1-201ENST00000328560 NBPF14Q5TI25 921 aa16.6■□□□□ 0.25
ATP2C1-201ENST00000328560 NBPF10Q6P3W6 841 aaKnown RBP16.6■□□□□ 0.25
ATP2C1-201ENST00000328560 VSIG10Q8N0Z9 540 aa16.6■□□□□ 0.25
ATP2C1-201ENST00000328560 NBPF15Q8N660 670 aa16.6■□□□□ 0.25
ATP2C1-201ENST00000328560 TSC1Q92574 1164 aa16.6■□□□□ 0.25
ATP2C1-201ENST00000328560 ANO6Q4KMQ2 910 aa16.59■□□□□ 0.25
ATP2C1-201ENST00000328560 GORABQ5T7V8 394 aa16.59■□□□□ 0.25
ATP2C1-201ENST00000328560 KBTBD3Q8NAB2 608 aa16.59■□□□□ 0.25
ATP2C1-201ENST00000328560 PAG1Q9NWQ8 432 aa16.59■□□□□ 0.25
ATP2C1-201ENST00000328560 SLIT3O75094 1523 aa16.59■□□□□ 0.25
ATP2C1-201ENST00000328560 NCOA5Q9HCD5 579 aaKnown RBP16.59■□□□□ 0.25
ATP2C1-201ENST00000328560 NR1I2O75469 434 aa16.58■□□□□ 0.25
ATP2C1-201ENST00000328560 RABL6Q3YEC7 729 aaPredicted RBP16.58■□□□□ 0.25
ATP2C1-201ENST00000328560 STOX1Q6ZVD7 989 aa16.58■□□□□ 0.25
ATP2C1-201ENST00000328560 CWC25Q9NXE8 425 aaPredicted RBP16.58■□□□□ 0.25
ATP2C1-201ENST00000328560 SCRN1Q12765 414 aa16.58■□□□□ 0.24
ATP2C1-201ENST00000328560 ZCRB1Q8TBF4 217 aaKnown RBP16.58■□□□□ 0.24
ATP2C1-201ENST00000328560 IFIT1P09914 478 aaKnown RBP16.58■□□□□ 0.24
ATP2C1-201ENST00000328560 FAM200AQ8TCP9 573 aa16.58■□□□□ 0.24
ATP2C1-201ENST00000328560 PIBF1Q8WXW3 757 aa16.58■□□□□ 0.24
ATP2C1-201ENST00000328560 FTOQ9C0B1 505 aaKnown RBP eCLIP16.58■□□□□ 0.24
ATP2C1-201ENST00000328560 MRVI1Q9Y6F6 885 aa16.58■□□□□ 0.24
ATP2C1-201ENST00000328560 FAM177BA6PVY3 158 aa16.57■□□□□ 0.24
ATP2C1-201ENST00000328560 USPL1Q5W0Q7 1092 aa16.57■□□□□ 0.24
ATP2C1-201ENST00000328560 FBXW7Q969H0 707 aa16.57■□□□□ 0.24
ATP2C1-201ENST00000328560 PUS3Q9BZE2 481 aaKnown RBP16.57■□□□□ 0.24
ATP2C1-201ENST00000328560 PGBD1Q96JS3 809 aa16.57■□□□□ 0.24
ATP2C1-201ENST00000328560 TERF1P54274 439 aa16.57■□□□□ 0.24
ATP2C1-201ENST00000328560 FOXO4P98177 505 aa16.57■□□□□ 0.24
ATP2C1-201ENST00000328560 HSP90AB3PQ58FF7 597 aa16.57■□□□□ 0.24
ATP2C1-201ENST00000328560 HAND2P61296 217 aa16.56■□□□□ 0.24
ATP2C1-201ENST00000328560 WASHC4Q2M389 1173 aa16.56■□□□□ 0.24
ATP2C1-201ENST00000328560 TSGA10IPQ3SY00 556 aa16.56■□□□□ 0.24
ATP2C1-201ENST00000328560 TTLL5Q6EMB2 1281 aa16.56■□□□□ 0.24
ATP2C1-201ENST00000328560 TRIM5Q9C035 493 aa16.56■□□□□ 0.24
ATP2C1-201ENST00000328560 PDCL3Q9H2J4 239 aa16.56■□□□□ 0.24
ATP2C1-201ENST00000328560 RGPD5Q99666 1765 aa16.56■□□□□ 0.24
ATP2C1-201ENST00000328560 DNAJC25Q9H1X3 360 aa16.56■□□□□ 0.24
ATP2C1-201ENST00000328560 SPATA31A3Q5VYP0 1347 aa16.56■□□□□ 0.24
ATP2C1-201ENST00000328560 ATG9AQ7Z3C6 839 aa16.55■□□□□ 0.24
ATP2C1-201ENST00000328560 RAB11FIP4Q86YS3 637 aa16.55■□□□□ 0.24
ATP2C1-201ENST00000328560 CBX8Q9HC52 389 aa16.55■□□□□ 0.24
ATP2C1-201ENST00000328560 PYCARDQ9ULZ3 195 aa16.55■□□□□ 0.24
ATP2C1-201ENST00000328560 CASP7P55210 303 aa16.55■□□□□ 0.24
ATP2C1-201ENST00000328560 DHX32Q7L7V1 743 aaKnown RBP16.55■□□□□ 0.24
ATP2C1-201ENST00000328560 CRYBG1Q9Y4K1 1723 aa16.55■□□□□ 0.24
ATP2C1-201ENST00000328560 ELP1O95163 1332 aa16.55■□□□□ 0.24
ATP2C1-201ENST00000328560 A0A1B0GUL7 405 aa16.55■□□□□ 0.24
ATP2C1-201ENST00000328560 GOLGA6L6A8MZA4 724 aa16.55■□□□□ 0.24
ATP2C1-201ENST00000328560 PDIA4P13667 645 aaKnown RBP16.55■□□□□ 0.24
ATP2C1-201ENST00000328560 PTGS1P23219 599 aa16.55■□□□□ 0.24
ATP2C1-201ENST00000328560 DNAJC5Q9H3Z4 198 aa16.55■□□□□ 0.24
ATP2C1-201ENST00000328560 PTPDC1A2A3K4 754 aa16.54■□□□□ 0.24
ATP2C1-201ENST00000328560 TAF7LQ5H9L4 462 aa16.54■□□□□ 0.24
ATP2C1-201ENST00000328560 DDX19AQ9NUU7 478 aaKnown RBP16.54■□□□□ 0.24
ATP2C1-201ENST00000328560 H7C1W4 665 aa16.54■□□□□ 0.24
ATP2C1-201ENST00000328560 RESTQ13127 1097 aa16.54■□□□□ 0.24
ATP2C1-201ENST00000328560 A0A087WWV3 80 aa16.54■□□□□ 0.24
ATP2C1-201ENST00000328560 IL15P40933 162 aaPredicted RBP16.54■□□□□ 0.24
ATP2C1-201ENST00000328560 ALDH8A1Q9H2A2 487 aaPredicted RBP16.54■□□□□ 0.24
ATP2C1-201ENST00000328560 CEP126Q9P2H0 1117 aa16.54■□□□□ 0.24
ATP2C1-201ENST00000328560 ZNF165P49910 485 aa16.53■□□□□ 0.24
ATP2C1-201ENST00000328560 GPHNQ9NQX3 736 aaPredicted RBP16.53■□□□□ 0.24
ATP2C1-201ENST00000328560 A0A0G2JS52 829 aa16.53■□□□□ 0.24
ATP2C1-201ENST00000328560 EYA2O00167 538 aa16.53■□□□□ 0.24
ATP2C1-201ENST00000328560 HSPD1P10809 573 aaKnown RBP16.53■□□□□ 0.24
ATP2C1-201ENST00000328560 MST1RQ04912 1400 aa16.53■□□□□ 0.24
ATP2C1-201ENST00000328560 CLSTN2Q9H4D0 955 aa16.53■□□□□ 0.24
ATP2C1-201ENST00000328560 CFAP45Q9UL16 551 aa16.53■□□□□ 0.24
ATP2C1-201ENST00000328560 ZNF142P52746 1687 aaPredicted RBP16.53■□□□□ 0.24
ATP2C1-201ENST00000328560 KCNF1Q9H3M0 494 aa16.53■□□□□ 0.24
ATP2C1-201ENST00000328560 PCDH11XQ9BZA7 1347 aa16.52■□□□□ 0.24
ATP2C1-201ENST00000328560 PCDH11YQ9BZA8 1340 aa16.52■□□□□ 0.24
ATP2C1-201ENST00000328560 TNS3Q68CZ2 1445 aa16.52■□□□□ 0.24
ATP2C1-201ENST00000328560 E7EWF7 191 aa16.52■□□□□ 0.24
ATP2C1-201ENST00000328560 CCDC57Q2TAC2 916 aa16.52■□□□□ 0.24
ATP2C1-201ENST00000328560 CCDC186Q7Z3E2 898 aa16.52■□□□□ 0.24
ATP2C1-201ENST00000328560 DYNC1I1O14576 645 aa16.52■□□□□ 0.23
ATP2C1-201ENST00000328560 NSUN7Q8NE18 718 aaKnown RBP16.52■□□□□ 0.23
ATP2C1-201ENST00000328560 ERCC4Q92889 916 aaPredicted RBP16.52■□□□□ 0.23
ATP2C1-201ENST00000328560 NRBP1Q9UHY1 535 aa16.52■□□□□ 0.23
ATP2C1-201ENST00000328560 TTC39AQ5SRH9 613 aa16.51■□□□□ 0.23
ATP2C1-201ENST00000328560 OTUD7BQ6GQQ9 843 aa16.51■□□□□ 0.23
ATP2C1-201ENST00000328560 HMGB1P09429 215 aaKnown RBP16.51■□□□□ 0.23
ATP2C1-201ENST00000328560 IL2RBP14784 551 aa16.51■□□□□ 0.23
ATP2C1-201ENST00000328560 ADORA1P30542 326 aa16.51■□□□□ 0.23
ATP2C1-201ENST00000328560 ME1P48163 572 aa16.51■□□□□ 0.23
ATP2C1-201ENST00000328560 CCAR1Q8IX12 1150 aaKnown RBP16.51■□□□□ 0.23
ATP2C1-201ENST00000328560 FAM89AQ96GI7 184 aa16.51■□□□□ 0.23
ATP2C1-201ENST00000328560 MAST3O60307 1309 aa16.51■□□□□ 0.23
ATP2C1-201ENST00000328560 C5P01031 1676 aa16.51■□□□□ 0.23
ATP2C1-201ENST00000328560 ADAMTSL3P82987 1691 aa16.51■□□□□ 0.23
ATP2C1-201ENST00000328560 RNF113AO15541 343 aaKnown RBP16.51■□□□□ 0.23
ATP2C1-201ENST00000328560 PFKFB2O60825 505 aa16.51■□□□□ 0.23
ATP2C1-201ENST00000328560 LRMPQ12912 555 aa16.51■□□□□ 0.23
ATP2C1-201ENST00000328560 ZSCAN16Q9H4T2 348 aaPredicted RBP16.51■□□□□ 0.23
ATP2C1-201ENST00000328560 HELLSQ9NRZ9 838 aa16.51■□□□□ 0.23
ATP2C1-201ENST00000328560 PHRF1Q9P1Y6 1649 aaKnown RBP16.5■□□□□ 0.23
ATP2C1-201ENST00000328560 M0R2C6 588 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms