RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 TSPY26PQ9H489 355 aa23.89■■□□□ 1.41
VPS53-201ENST00000291074 IFIT1P09914 478 aaKnown RBP23.88■■□□□ 1.41
VPS53-201ENST00000291074 KRT32Q14532 448 aa23.88■■□□□ 1.41
VPS53-201ENST00000291074 LRRC2Q9BYS8 371 aa23.88■■□□□ 1.41
VPS53-201ENST00000291074 ALDH8A1Q9H2A2 487 aaPredicted RBP23.88■■□□□ 1.41
VPS53-201ENST00000291074 CIAO1O76071 339 aa23.88■■□□□ 1.41
VPS53-201ENST00000291074 CCDC57Q2TAC2 916 aa23.88■■□□□ 1.41
VPS53-201ENST00000291074 KIF6Q6ZMV9 814 aa23.88■■□□□ 1.41
VPS53-201ENST00000291074 STOX1Q6ZVD7 989 aa23.88■■□□□ 1.41
VPS53-201ENST00000291074 UBE2HP62256 183 aa23.87■■□□□ 1.41
VPS53-201ENST00000291074 FAM173BQ6P4H8 233 aa23.87■■□□□ 1.41
VPS53-201ENST00000291074 A0A0G2JLW4 131 aa23.87■■□□□ 1.41
VPS53-201ENST00000291074 ADORA1P30542 326 aa23.87■■□□□ 1.41
VPS53-201ENST00000291074 Q6ZUG5 572 aa23.87■■□□□ 1.41
VPS53-201ENST00000291074 GPTP24298 496 aa23.86■■□□□ 1.41
VPS53-201ENST00000291074 CEP126Q9P2H0 1117 aa23.86■■□□□ 1.41
VPS53-201ENST00000291074 HLFQ16534 295 aa23.86■■□□□ 1.41
VPS53-201ENST00000291074 PDLIM2Q96JY6 352 aa23.86■■□□□ 1.41
VPS53-201ENST00000291074 ZMYM1Q5SVZ6 1142 aa23.85■■□□□ 1.41
VPS53-201ENST00000291074 JAK2O60674 1132 aa23.85■■□□□ 1.41
VPS53-201ENST00000291074 CCDC183Q5T5S1 534 aa23.85■■□□□ 1.41
VPS53-201ENST00000291074 SLC4A9Q96Q91 983 aa23.85■■□□□ 1.41
VPS53-201ENST00000291074 PHF14O94880 888 aa23.84■■□□□ 1.41
VPS53-201ENST00000291074 PCCAP05165 728 aaPredicted RBP23.84■■□□□ 1.41
VPS53-201ENST00000291074 HELLSQ9NRZ9 838 aa23.84■■□□□ 1.41
VPS53-201ENST00000291074 MAST3O60307 1309 aa23.84■■□□□ 1.41
VPS53-201ENST00000291074 STARD3NLO95772 234 aa23.84■■□□□ 1.41
VPS53-201ENST00000291074 FKBP4Q02790 459 aaKnown RBP eCLIP23.84■■□□□ 1.41
VPS53-201ENST00000291074 VSIG10Q8N0Z9 540 aa23.84■■□□□ 1.41
VPS53-201ENST00000291074 HSP90B1P14625 803 aaKnown RBP23.83■■□□□ 1.41
VPS53-201ENST00000291074 TRIM28Q13263 835 aaKnown RBP23.83■■□□□ 1.41
VPS53-201ENST00000291074 TEX13AQ9BXU3 409 aaPredicted RBP23.83■■□□□ 1.41
VPS53-201ENST00000291074 GTF3C6Q969F1 213 aa23.83■■□□□ 1.4
VPS53-201ENST00000291074 MAP3K15Q6ZN16 1313 aa23.83■■□□□ 1.4
VPS53-201ENST00000291074 TAF7LQ5H9L4 462 aa23.82■■□□□ 1.4
VPS53-201ENST00000291074 ZBTB38Q8NAP3 1195 aaPredicted RBP23.82■■□□□ 1.4
VPS53-201ENST00000291074 BRF1Q92994 677 aa23.82■■□□□ 1.4
VPS53-201ENST00000291074 XAGE2Q96GT9 111 aa23.82■■□□□ 1.4
VPS53-201ENST00000291074 M0R2C6 588 aa23.82■■□□□ 1.4
VPS53-201ENST00000291074 SYTL4Q96C24 671 aaPredicted RBP23.82■■□□□ 1.4
VPS53-201ENST00000291074 DISP2A7MBM2 1401 aa23.81■■□□□ 1.4
VPS53-201ENST00000291074 RNF113AO15541 343 aaKnown RBP23.81■■□□□ 1.4
VPS53-201ENST00000291074 HSPD1P10809 573 aaKnown RBP23.81■■□□□ 1.4
VPS53-201ENST00000291074 PDCP20941 246 aa23.81■■□□□ 1.4
VPS53-201ENST00000291074 SCARF1Q14162 830 aa23.81■■□□□ 1.4
VPS53-201ENST00000291074 GORABQ5T7V8 394 aa23.81■■□□□ 1.4
VPS53-201ENST00000291074 SPEF2Q9C093 1822 aa23.81■■□□□ 1.4
VPS53-201ENST00000291074 GIGYF2Q6Y7W6 1299 aaKnown RBP23.81■■□□□ 1.4
VPS53-201ENST00000291074 TTC6Q86TZ1 520 aa23.81■■□□□ 1.4
VPS53-201ENST00000291074 TTC39AQ5SRH9 613 aa23.8■■□□□ 1.4
VPS53-201ENST00000291074 DSCC1Q9BVC3 393 aa23.8■■□□□ 1.4
VPS53-201ENST00000291074 IFIT5Q13325 482 aaKnown RBP23.8■■□□□ 1.4
VPS53-201ENST00000291074 ZSCAN30Q86W11 494 aa23.8■■□□□ 1.4
VPS53-201ENST00000291074 ZBTB1Q9Y2K1 713 aa23.8■■□□□ 1.4
VPS53-201ENST00000291074 BCL9O00512 1426 aa23.8■■□□□ 1.4
VPS53-201ENST00000291074 CSF1RP07333 972 aa23.79■■□□□ 1.4
VPS53-201ENST00000291074 FGD1P98174 961 aa23.79■■□□□ 1.4
VPS53-201ENST00000291074 CYP19A1P11511 503 aaPredicted RBP23.79■■□□□ 1.4
VPS53-201ENST00000291074 CSPP1Q1MSJ5 1256 aa23.79■■□□□ 1.4
VPS53-201ENST00000291074 TTLL5Q6EMB2 1281 aa23.79■■□□□ 1.4
VPS53-201ENST00000291074 PI16Q6UXB8 463 aa23.79■■□□□ 1.4
VPS53-201ENST00000291074 NLRP10Q86W26 655 aa23.79■■□□□ 1.4
VPS53-201ENST00000291074 OSBP2Q969R2 916 aa23.79■■□□□ 1.4
VPS53-201ENST00000291074 DDX11Q96FC9 970 aa23.79■■□□□ 1.4
VPS53-201ENST00000291074 PLA2G12BQ9BX93 195 aa23.79■■□□□ 1.4
VPS53-201ENST00000291074 RIC1Q4ADV7 1423 aa23.79■■□□□ 1.4
VPS53-201ENST00000291074 LRP6O75581 1613 aa23.78■■□□□ 1.4
VPS53-201ENST00000291074 HSP90AB3PQ58FF7 597 aa23.78■■□□□ 1.4
VPS53-201ENST00000291074 CCDC158Q5M9N0 1113 aa23.78■■□□□ 1.4
VPS53-201ENST00000291074 COL14A1Q05707 1796 aaKnown RBP23.78■■□□□ 1.4
VPS53-201ENST00000291074 KRT85P78386 507 aa23.78■■□□□ 1.4
VPS53-201ENST00000291074 SCRN1Q12765 414 aa23.78■■□□□ 1.4
VPS53-201ENST00000291074 GREM2Q9H772 168 aa23.78■■□□□ 1.4
VPS53-201ENST00000291074 GIMAP6Q6P9H5 292 aa23.77■■□□□ 1.4
VPS53-201ENST00000291074 ANKRD36CQ5JPF3 1778 aa23.77■■□□□ 1.4
VPS53-201ENST00000291074 DHX32Q7L7V1 743 aaKnown RBP23.77■■□□□ 1.4
VPS53-201ENST00000291074 AKAP2Q9Y2D5 859 aa23.77■■□□□ 1.4
VPS53-201ENST00000291074 NUP98P52948 1817 aa23.77■■□□□ 1.4
VPS53-201ENST00000291074 MYH3P11055 1940 aa23.77■■□□□ 1.39
VPS53-201ENST00000291074 E7EWF7 191 aa23.77■■□□□ 1.39
VPS53-201ENST00000291074 APOBRQ0VD83 1088 aa23.77■■□□□ 1.39
VPS53-201ENST00000291074 CHST3Q7LGC8 479 aa23.77■■□□□ 1.39
VPS53-201ENST00000291074 PPIL4Q8WUA2 492 aaKnown RBP eCLIP23.77■■□□□ 1.39
VPS53-201ENST00000291074 TFIP11Q9UBB9 837 aaKnown RBP23.77■■□□□ 1.39
VPS53-201ENST00000291074 HCLS1P14317 486 aaPredicted RBP23.76■■□□□ 1.39
VPS53-201ENST00000291074 ITGA6P23229 1130 aa23.76■■□□□ 1.39
VPS53-201ENST00000291074 ZAP70P43403 619 aa23.76■■□□□ 1.39
VPS53-201ENST00000291074 TTLL11Q8NHH1 800 aa23.76■■□□□ 1.39
VPS53-201ENST00000291074 NWD2Q9ULI1 1742 aa23.75■■□□□ 1.39
VPS53-201ENST00000291074 COL16A1Q07092 1604 aaPredicted RBP23.75■■□□□ 1.39
VPS53-201ENST00000291074 FBXO3Q9UK99 471 aa23.75■■□□□ 1.39
VPS53-201ENST00000291074 WASHC4Q2M389 1173 aa23.75■■□□□ 1.39
VPS53-201ENST00000291074 METTL24Q5JXM2 366 aa23.75■■□□□ 1.39
VPS53-201ENST00000291074 TBC1D2BQ9UPU7 963 aa23.75■■□□□ 1.39
VPS53-201ENST00000291074 MYH7P12883 1935 aa23.74■■□□□ 1.39
VPS53-201ENST00000291074 CDHR2Q9BYE9 1310 aa23.74■■□□□ 1.39
VPS53-201ENST00000291074 FOXP2O15409 715 aa23.74■■□□□ 1.39
VPS53-201ENST00000291074 HMGB1P09429 215 aaKnown RBP23.74■■□□□ 1.39
VPS53-201ENST00000291074 FOSBP53539 338 aa23.74■■□□□ 1.39
VPS53-201ENST00000291074 EXOSC10Q01780 885 aaKnown RBP23.74■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms