RNA–Protein interactions for RNA: ENST00000258772.9

DDX56-201, Transcript of DEAD-box helicase 56, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DDX56, Length 2,336 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-201ENST00000258772 TPM3P06753 285 aa18.01■□□□□ 0.47
DDX56-201ENST00000258772 ATF3P18847 181 aa18.01■□□□□ 0.47
DDX56-201ENST00000258772 RESTQ13127 1097 aa18.01■□□□□ 0.47
DDX56-201ENST00000258772 RBM43Q6ZSC3 357 aaKnown RBP18.01■□□□□ 0.47
DDX56-201ENST00000258772 PGBD1Q96JS3 809 aa18.01■□□□□ 0.47
DDX56-201ENST00000258772 PKD1L3Q7Z443 1732 aa18■□□□□ 0.47
DDX56-201ENST00000258772 SCRN1Q12765 414 aa18■□□□□ 0.47
DDX56-201ENST00000258772 STOX1Q6ZVD7 989 aa18■□□□□ 0.47
DDX56-201ENST00000258772 ATG9AQ7Z3C6 839 aa18■□□□□ 0.47
DDX56-201ENST00000258772 NEUROD6Q96NK8 337 aa18■□□□□ 0.47
DDX56-201ENST00000258772 MAP7D2Q96T17 732 aa18■□□□□ 0.47
DDX56-201ENST00000258772 LRRC2Q9BYS8 371 aa18■□□□□ 0.47
DDX56-201ENST00000258772 CLSTN2Q9H4D0 955 aa18■□□□□ 0.47
DDX56-201ENST00000258772 CCDC9Q9Y3X0 531 aaKnown RBP18■□□□□ 0.47
DDX56-201ENST00000258772 LAMA4Q16363 1823 aa18■□□□□ 0.47
DDX56-201ENST00000258772 NBPF26B4DH59 902 aa18■□□□□ 0.47
DDX56-201ENST00000258772 H3BQV1 296 aa18■□□□□ 0.47
DDX56-201ENST00000258772 IFFO2Q5TF58 517 aa18■□□□□ 0.47
DDX56-201ENST00000258772 NBPF14Q5TI25 921 aa18■□□□□ 0.47
DDX56-201ENST00000258772 NBPF10Q6P3W6 841 aaKnown RBP18■□□□□ 0.47
DDX56-201ENST00000258772 NBPF15Q8N660 670 aa18■□□□□ 0.47
DDX56-201ENST00000258772 MYRIPQ8NFW9 859 aa18■□□□□ 0.47
DDX56-201ENST00000258772 ZSCAN16Q9H4T2 348 aaPredicted RBP18■□□□□ 0.47
DDX56-201ENST00000258772 HMGB1P09429 215 aaKnown RBP17.99■□□□□ 0.47
DDX56-201ENST00000258772 LUZP1Q86V48 1076 aa17.99■□□□□ 0.47
DDX56-201ENST00000258772 SMARCC2Q8TAQ2 1214 aa17.99■□□□□ 0.47
DDX56-201ENST00000258772 DDX11Q96FC9 970 aa17.99■□□□□ 0.47
DDX56-201ENST00000258772 KCNF1Q9H3M0 494 aa17.99■□□□□ 0.47
DDX56-201ENST00000258772 HELLSQ9NRZ9 838 aa17.99■□□□□ 0.47
DDX56-201ENST00000258772 PALLDQ8WX93 1383 aa17.99■□□□□ 0.47
DDX56-201ENST00000258772 GOLIM4O00461 696 aa17.99■□□□□ 0.47
DDX56-201ENST00000258772 PFKFB2O60825 505 aa17.99■□□□□ 0.47
DDX56-201ENST00000258772 NR1I2O75469 434 aa17.99■□□□□ 0.47
DDX56-201ENST00000258772 TIMM10P62072 90 aa17.99■□□□□ 0.47
DDX56-201ENST00000258772 FGD1P98174 961 aa17.99■□□□□ 0.47
DDX56-201ENST00000258772 DHX32Q7L7V1 743 aaKnown RBP17.99■□□□□ 0.47
DDX56-201ENST00000258772 SPC24Q8NBT2 197 aa17.99■□□□□ 0.47
DDX56-201ENST00000258772 KIAA1524Q8TCG1 905 aa17.99■□□□□ 0.47
DDX56-201ENST00000258772 PRIMPOLQ96LW4 560 aa17.99■□□□□ 0.47
DDX56-201ENST00000258772 LLPHQ9BRT6 129 aaKnown RBP17.99■□□□□ 0.47
DDX56-201ENST00000258772 GPR108Q9NPR9 543 aa17.99■□□□□ 0.47
DDX56-201ENST00000258772 PAG1Q9NWQ8 432 aa17.99■□□□□ 0.47
DDX56-201ENST00000258772 LAMB4A4D0S4 1761 aa17.99■□□□□ 0.47
DDX56-201ENST00000258772 GLI3P10071 1580 aa17.98■□□□□ 0.47
DDX56-201ENST00000258772 GOLGA6L6A8MZA4 724 aa17.98■□□□□ 0.47
DDX56-201ENST00000258772 ANO6Q4KMQ2 910 aa17.98■□□□□ 0.47
DDX56-201ENST00000258772 SLFNL1Q499Z3 407 aa17.98■□□□□ 0.47
DDX56-201ENST00000258772 BICD2Q8TD16 824 aa17.98■□□□□ 0.47
DDX56-201ENST00000258772 DSCC1Q9BVC3 393 aa17.98■□□□□ 0.47
DDX56-201ENST00000258772 CBX8Q9HC52 389 aa17.98■□□□□ 0.47
DDX56-201ENST00000258772 CWC25Q9NXE8 425 aaPredicted RBP17.98■□□□□ 0.47
DDX56-201ENST00000258772 CFAP45Q9UL16 551 aa17.98■□□□□ 0.47
DDX56-201ENST00000258772 TTLL7Q6ZT98 887 aa17.97■□□□□ 0.47
DDX56-201ENST00000258772 TICAM2Q86XR7 235 aa17.97■□□□□ 0.47
DDX56-201ENST00000258772 IL15P40933 162 aaPredicted RBP17.97■□□□□ 0.47
DDX56-201ENST00000258772 HMGN5P82970 282 aaKnown RBP17.97■□□□□ 0.47
DDX56-201ENST00000258772 EXOSC10Q01780 885 aaKnown RBP17.97■□□□□ 0.47
DDX56-201ENST00000258772 ZMYM1Q5SVZ6 1142 aa17.97■□□□□ 0.47
DDX56-201ENST00000258772 NSUN7Q8NE18 718 aaKnown RBP17.97■□□□□ 0.47
DDX56-201ENST00000258772 PYCARDQ9ULZ3 195 aa17.96■□□□□ 0.47
DDX56-201ENST00000258772 TMEM94Q12767 1356 aa17.96■□□□□ 0.46
DDX56-201ENST00000258772 AGXT2Q9BYV1 514 aa17.95■□□□□ 0.46
DDX56-201ENST00000258772 CTDNEP1O95476 244 aa17.95■□□□□ 0.46
DDX56-201ENST00000258772 HSPD1P10809 573 aaKnown RBP17.95■□□□□ 0.46
DDX56-201ENST00000258772 ADD1P35611 737 aaKnown RBP17.95■□□□□ 0.46
DDX56-201ENST00000258772 APOBRQ0VD83 1088 aa17.95■□□□□ 0.46
DDX56-201ENST00000258772 NAA16Q6N069 864 aaPredicted RBP17.95■□□□□ 0.46
DDX56-201ENST00000258772 TNS3Q68CZ2 1445 aa17.94■□□□□ 0.46
DDX56-201ENST00000258772 EYA2O00167 538 aa17.94■□□□□ 0.46
DDX56-201ENST00000258772 LRRC24Q50LG9 513 aa17.94■□□□□ 0.46
DDX56-201ENST00000258772 MTERF4Q7Z6M4 381 aaKnown RBP17.94■□□□□ 0.46
DDX56-201ENST00000258772 CCDC191Q8NCU4 936 aa17.94■□□□□ 0.46
DDX56-201ENST00000258772 TDRD7Q8NHU6 1098 aaKnown RBP17.94■□□□□ 0.46
DDX56-201ENST00000258772 MYH15Q9Y2K3 1946 aa17.94■□□□□ 0.46
DDX56-201ENST00000258772 E7EWF7 191 aa17.93■□□□□ 0.46
DDX56-201ENST00000258772 A1BGP04217 495 aa17.93■□□□□ 0.46
DDX56-201ENST00000258772 IFIT1P09914 478 aaKnown RBP17.93■□□□□ 0.46
DDX56-201ENST00000258772 ZNF594Q96JF6 807 aaPredicted RBP17.93■□□□□ 0.46
DDX56-201ENST00000258772 RCOR1Q9UKL0 485 aa17.93■□□□□ 0.46
DDX56-201ENST00000258772 PARP4Q9UKK3 1724 aaKnown RBP17.93■□□□□ 0.46
DDX56-201ENST00000258772 NUP188Q5SRE5 1749 aa17.93■□□□□ 0.46
DDX56-201ENST00000258772 A0A0G2JLW4 131 aa17.93■□□□□ 0.46
DDX56-201ENST00000258772 PTPDC1A2A3K4 754 aa17.93■□□□□ 0.46
DDX56-201ENST00000258772 RNF113AO15541 343 aaKnown RBP17.93■□□□□ 0.46
DDX56-201ENST00000258772 GTF2F1P35269 517 aaKnown RBP eCLIP17.93■□□□□ 0.461e-7■■■■■ 30.9
DDX56-201ENST00000258772 ZNF165P49910 485 aa17.93■□□□□ 0.46
DDX56-201ENST00000258772 CCT2P78371 535 aaKnown RBP17.93■□□□□ 0.46
DDX56-201ENST00000258772 CPDO75976 1380 aa17.92■□□□□ 0.46
DDX56-201ENST00000258772 A0A1B0GUL7 405 aa17.92■□□□□ 0.46
DDX56-201ENST00000258772 PTGS1P23219 599 aa17.92■□□□□ 0.46
DDX56-201ENST00000258772 CEBPZQ03701 1054 aaKnown RBP17.92■□□□□ 0.46
DDX56-201ENST00000258772 DNAJC25Q9H1X3 360 aa17.92■□□□□ 0.46
DDX56-201ENST00000258772 ZBTB3Q9H5J0 574 aa17.92■□□□□ 0.46
DDX56-201ENST00000258772 ATG3Q9NT62 314 aa17.92■□□□□ 0.46
DDX56-201ENST00000258772 KIF3AQ9Y496 699 aa17.92■□□□□ 0.46
DDX56-201ENST00000258772 SPATA31A3Q5VYP0 1347 aa17.92■□□□□ 0.46
DDX56-201ENST00000258772 TJP1Q07157 1748 aa17.92■□□□□ 0.46
DDX56-201ENST00000258772 PLA2G4DQ86XP0 818 aa17.92■□□□□ 0.46
DDX56-201ENST00000258772 VSIG10Q8N0Z9 540 aa17.92■□□□□ 0.46
DDX56-201ENST00000258772 TRIM5Q9C035 493 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms