RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 ATP2B2Q01814 1243 aa5.34□□□□□ -1.55
VPS13C-201ENST00000249837 DCAF8Q5TAQ9 597 aa5.34□□□□□ -1.55
VPS13C-201ENST00000249837 ACBD3Q9H3P7 528 aa5.34□□□□□ -1.55
VPS13C-201ENST00000249837 HOXC9P31274 260 aa5.34□□□□□ -1.55
VPS13C-201ENST00000249837 TTC6Q86TZ1 520 aa5.34□□□□□ -1.55
VPS13C-201ENST00000249837 DACH1Q9UI36 760 aa5.34□□□□□ -1.55
VPS13C-201ENST00000249837 RNF113AO15541 343 aaKnown RBP5.34□□□□□ -1.55
VPS13C-201ENST00000249837 DHX8Q14562 1220 aaKnown RBP5.34□□□□□ -1.55
VPS13C-201ENST00000249837 KRT222Q8N1A0 295 aa5.34□□□□□ -1.55
VPS13C-201ENST00000249837 TRIM34Q9BYJ4 488 aa5.34□□□□□ -1.55
VPS13C-201ENST00000249837 RNF216Q9NWF9 866 aaPredicted RBP5.34□□□□□ -1.55
VPS13C-201ENST00000249837 IARSP41252 1262 aaKnown RBP5.34□□□□□ -1.56
VPS13C-201ENST00000249837 KARSQ15046 597 aaKnown RBP5.34□□□□□ -1.56
VPS13C-201ENST00000249837 CABLES1Q8TDN4 633 aa5.34□□□□□ -1.56
VPS13C-201ENST00000249837 SSH3Q8TE77 659 aa5.34□□□□□ -1.56
VPS13C-201ENST00000249837 EAF2Q96CJ1 260 aaPredicted RBP5.34□□□□□ -1.56
VPS13C-201ENST00000249837 RNMTO43148 476 aaKnown RBP5.34□□□□□ -1.56
VPS13C-201ENST00000249837 ZBTB43O43298 467 aa5.34□□□□□ -1.56
VPS13C-201ENST00000249837 METAP2P50579 478 aaKnown RBP eCLIP5.34□□□□□ -1.56
VPS13C-201ENST00000249837 SPTLC2O15270 562 aa5.34□□□□□ -1.56
VPS13C-201ENST00000249837 KCNA6P17658 529 aa5.34□□□□□ -1.56
VPS13C-201ENST00000249837 UBASH3AP57075 661 aa5.34□□□□□ -1.56
VPS13C-201ENST00000249837 AKAP4Q5JQC9 854 aa5.34□□□□□ -1.56
VPS13C-201ENST00000249837 KCNG4Q8TDN1 519 aa5.34□□□□□ -1.56
VPS13C-201ENST00000249837 ZNF500O60304 480 aaPredicted RBP5.33□□□□□ -1.56
VPS13C-201ENST00000249837 AFMP43652 599 aa5.33□□□□□ -1.56
VPS13C-201ENST00000249837 STIM1Q13586 685 aa5.33□□□□□ -1.56
VPS13C-201ENST00000249837 ZHX3Q9H4I2 956 aa5.33□□□□□ -1.56
VPS13C-201ENST00000249837 IQGAP1P46940 1657 aa5.33□□□□□ -1.56
VPS13C-201ENST00000249837 IP6K1Q92551 441 aa5.33□□□□□ -1.56
VPS13C-201ENST00000249837 LSG1Q9H089 658 aaKnown RBP5.33□□□□□ -1.56
VPS13C-201ENST00000249837 TPCN1Q9ULQ1 816 aa5.33□□□□□ -1.56
VPS13C-201ENST00000249837 BMS1Q14692 1282 aaKnown RBP5.33□□□□□ -1.56
VPS13C-201ENST00000249837 ATP2B3Q16720 1220 aa5.33□□□□□ -1.56
VPS13C-201ENST00000249837 CCDC150Q8NCX0 1101 aa5.33□□□□□ -1.56
VPS13C-201ENST00000249837 DHX32Q7L7V1 743 aaKnown RBP5.33□□□□□ -1.56
VPS13C-201ENST00000249837 KIAA0232Q92628 1395 aa5.33□□□□□ -1.56
VPS13C-201ENST00000249837 AMOTL1Q8IY63 956 aa5.33□□□□□ -1.56
VPS13C-201ENST00000249837 IQSEC3Q9UPP2 1182 aaPredicted RBP5.33□□□□□ -1.56
VPS13C-201ENST00000249837 KIAA1328Q86T90 577 aa5.33□□□□□ -1.56
VPS13C-201ENST00000249837 PODXL2Q9NZ53 605 aa5.33□□□□□ -1.56
VPS13C-201ENST00000249837 DDX21Q9NR30 783 aaKnown RBP eCLIP5.33□□□□□ -1.56
VPS13C-201ENST00000249837 IFNL2Q8IZJ0 200 aa5.33□□□□□ -1.56
VPS13C-201ENST00000249837 SLC12A7Q9Y666 1083 aa5.33□□□□□ -1.56
VPS13C-201ENST00000249837 A0A0D9SFI3 127 aa5.33□□□□□ -1.56
VPS13C-201ENST00000249837 KIF5CO60282 957 aa5.33□□□□□ -1.56
VPS13C-201ENST00000249837 CCDC102BQ68D86 513 aa5.33□□□□□ -1.56
VPS13C-201ENST00000249837 TM6SF1Q9BZW5 370 aa5.33□□□□□ -1.56
VPS13C-201ENST00000249837 PAG1Q9NWQ8 432 aa5.33□□□□□ -1.56
VPS13C-201ENST00000249837 NRBP1Q9UHY1 535 aa5.33□□□□□ -1.56
VPS13C-201ENST00000249837 TRMT112Q9UI30 125 aaKnown RBP5.33□□□□□ -1.56
VPS13C-201ENST00000249837 CLASP1Q7Z460 1538 aa5.33□□□□□ -1.56
VPS13C-201ENST00000249837 PATL2C9JE40 543 aaKnown RBP5.33□□□□□ -1.56
VPS13C-201ENST00000249837 ZNF397Q8NF99 534 aaPredicted RBP5.33□□□□□ -1.56
VPS13C-201ENST00000249837 AKAP2Q9Y2D5 859 aa5.33□□□□□ -1.56
VPS13C-201ENST00000249837 NOM1Q5C9Z4 860 aaKnown RBP5.32□□□□□ -1.56
VPS13C-201ENST00000249837 JAKMIP3Q5VZ66 844 aa5.32□□□□□ -1.56
VPS13C-201ENST00000249837 WASF1Q92558 559 aa5.32□□□□□ -1.56
VPS13C-201ENST00000249837 LARGE1O95461 756 aa5.32□□□□□ -1.56
VPS13C-201ENST00000249837 CUL4AQ13619 759 aa5.32□□□□□ -1.56
VPS13C-201ENST00000249837 LDHAL6AQ6ZMR3 332 aa5.32□□□□□ -1.56
VPS13C-201ENST00000249837 GTF3C6Q969F1 213 aa5.32□□□□□ -1.56
VPS13C-201ENST00000249837 IBTKQ9P2D0 1353 aaPredicted RBP5.32□□□□□ -1.56
VPS13C-201ENST00000249837 LTKP29376 864 aa5.32□□□□□ -1.56
VPS13C-201ENST00000249837 EIF5P55010 431 aaKnown RBP5.32□□□□□ -1.56
VPS13C-201ENST00000249837 ARHGAP29Q52LW3 1261 aa5.32□□□□□ -1.56
VPS13C-201ENST00000249837 SYT10Q6XYQ8 523 aa5.32□□□□□ -1.56
VPS13C-201ENST00000249837 GNL3LQ9NVN8 582 aaKnown RBP5.32□□□□□ -1.56
VPS13C-201ENST00000249837 SBNO1A3KN83 1393 aa5.32□□□□□ -1.56
VPS13C-201ENST00000249837 ADCK5Q3MIX3 580 aa5.32□□□□□ -1.56
VPS13C-201ENST00000249837 LEKR1Q6ZMV7 388 aa5.32□□□□□ -1.56
VPS13C-201ENST00000249837 KIF2CQ99661 725 aa5.32□□□□□ -1.56
VPS13C-201ENST00000249837 PTCH1Q13635 1447 aa5.32□□□□□ -1.56
VPS13C-201ENST00000249837 PLEKHG3A1L390 1219 aa5.32□□□□□ -1.56
VPS13C-201ENST00000249837 STX17P56962 302 aa5.32□□□□□ -1.56
VPS13C-201ENST00000249837 OSBPL3Q9H4L5 887 aa5.32□□□□□ -1.56
VPS13C-201ENST00000249837 MCM6Q14566 821 aa5.32□□□□□ -1.56
VPS13C-201ENST00000249837 ANKRD18BA2A2Z9 1011 aa5.32□□□□□ -1.56
VPS13C-201ENST00000249837 EIF3JO75822 258 aaKnown RBP5.32□□□□□ -1.56
VPS13C-201ENST00000249837 DNA2P51530 1060 aa5.32□□□□□ -1.56
VPS13C-201ENST00000249837 ENOX2Q16206 610 aaKnown RBP5.32□□□□□ -1.56
VPS13C-201ENST00000249837 HELBQ8NG08 1087 aaPredicted RBP5.32□□□□□ -1.56
VPS13C-201ENST00000249837 LAMC1P11047 1609 aa5.32□□□□□ -1.56
VPS13C-201ENST00000249837 EFCAB6Q5THR3 1501 aa5.32□□□□□ -1.56
VPS13C-201ENST00000249837 STARD3NLO95772 234 aa5.32□□□□□ -1.56
VPS13C-201ENST00000249837 PROSER3Q2NL68 480 aa5.32□□□□□ -1.56
VPS13C-201ENST00000249837 CCDC102AQ96A19 550 aa5.32□□□□□ -1.56
VPS13C-201ENST00000249837 SEC62Q99442 399 aaKnown RBP5.32□□□□□ -1.56
VPS13C-201ENST00000249837 TSPYL1Q9H0U9 437 aa5.32□□□□□ -1.56
VPS13C-201ENST00000249837 RANBP6O60518 1105 aaKnown RBP5.32□□□□□ -1.56
VPS13C-201ENST00000249837 ERLIN1O75477 346 aa5.32□□□□□ -1.56
VPS13C-201ENST00000249837 CENPHQ9H3R5 247 aa5.32□□□□□ -1.56
VPS13C-201ENST00000249837 ABCC3O15438 1527 aa5.32□□□□□ -1.56
VPS13C-201ENST00000249837 FAM135BQ49AJ0 1406 aa5.32□□□□□ -1.56
VPS13C-201ENST00000249837 RXRAP19793 462 aa5.32□□□□□ -1.56
VPS13C-201ENST00000249837 NCOA7Q8NI08 942 aa5.32□□□□□ -1.56
VPS13C-201ENST00000249837 CALCOCO1Q9P1Z2 691 aa5.32□□□□□ -1.56
VPS13C-201ENST00000249837 EPS15P42566 896 aa5.31□□□□□ -1.56
VPS13C-201ENST00000249837 CEP89Q96ST8 783 aa5.31□□□□□ -1.56
VPS13C-201ENST00000249837 LZTFL1Q9NQ48 299 aa5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms