RNA–Protein interactions for RNA: ENST00000216456.6

VTI1B-201, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 1 (best)

Gene VTI1B, Length 1,103 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-201ENST00000216456 VAMP4O75379 141 aa28.4■■■□□ 2.14
VTI1B-201ENST00000216456 UFL1O94874 794 aa28.4■■■□□ 2.14
VTI1B-201ENST00000216456 CTSWP56202 376 aa28.4■■■□□ 2.14
VTI1B-201ENST00000216456 FLIIQ13045 1269 aa28.4■■■□□ 2.14
VTI1B-201ENST00000216456 CST9Q5W186 159 aa28.4■■■□□ 2.14
VTI1B-201ENST00000216456 GLIS2Q9BZE0 524 aaPredicted RBP28.4■■■□□ 2.14
VTI1B-201ENST00000216456 ANKIB1Q9P2G1 1089 aa28.4■■■□□ 2.14
VTI1B-201ENST00000216456 EGFRP00533 1210 aa28.39■■■□□ 2.14
VTI1B-201ENST00000216456 MICALL2Q8IY33 904 aa28.39■■■□□ 2.14
VTI1B-201ENST00000216456 CHMP4AQ9BY43 222 aa28.39■■■□□ 2.14
VTI1B-201ENST00000216456 GREM2Q9H772 168 aa28.39■■■□□ 2.14
VTI1B-201ENST00000216456 SAMD7Q7Z3H4 446 aa28.38■■■□□ 2.13
VTI1B-201ENST00000216456 UBE3BQ7Z3V4 1068 aa28.38■■■□□ 2.13
VTI1B-201ENST00000216456 WDR63Q8IWG1 891 aa28.38■■■□□ 2.13
VTI1B-201ENST00000216456 TTLL11Q8NHH1 800 aa28.38■■■□□ 2.13
VTI1B-201ENST00000216456 PODXL2Q9NZ53 605 aa28.38■■■□□ 2.13
VTI1B-201ENST00000216456 RASSF10A6NK89 507 aa28.37■■■□□ 2.13
VTI1B-201ENST00000216456 NEXNQ0ZGT2 675 aa28.37■■■□□ 2.13
VTI1B-201ENST00000216456 DEFB115Q30KQ5 88 aa28.37■■■□□ 2.13
VTI1B-201ENST00000216456 NCBP3Q53F19 620 aaKnown RBP28.37■■■□□ 2.13
VTI1B-201ENST00000216456 EYA3Q99504 573 aa28.37■■■□□ 2.13
VTI1B-201ENST00000216456 FOXN1O15353 648 aa28.36■■■□□ 2.13
VTI1B-201ENST00000216456 HSP90B1P14625 803 aaKnown RBP28.36■■■□□ 2.13
VTI1B-201ENST00000216456 FKBP5Q13451 457 aaPredicted RBP28.36■■■□□ 2.13
VTI1B-201ENST00000216456 ANKRD18AQ8IVF6 992 aa28.36■■■□□ 2.13
VTI1B-201ENST00000216456 GGA1Q9UJY5 639 aa28.36■■■□□ 2.13
VTI1B-201ENST00000216456 SCN9AQ15858 1988 aa28.35■■■□□ 2.13
VTI1B-201ENST00000216456 H7C1W4 665 aa28.35■■■□□ 2.13
VTI1B-201ENST00000216456 TBC1D10BQ4KMP7 808 aaPredicted RBP28.35■■■□□ 2.13
VTI1B-201ENST00000216456 ZC3H12CQ9C0D7 883 aaKnown RBP28.35■■■□□ 2.13
VTI1B-201ENST00000216456 F6X3S4 739 aa28.33■■■□□ 2.13
VTI1B-201ENST00000216456 GRM1Q13255 1194 aa28.33■■■□□ 2.13
VTI1B-201ENST00000216456 GCKRQ14397 625 aa28.33■■■□□ 2.13
VTI1B-201ENST00000216456 RBM26Q5T8P6 1007 aaKnown RBP28.33■■■□□ 2.13
VTI1B-201ENST00000216456 DNAAF4Q8WXU2 420 aa28.33■■■□□ 2.13
VTI1B-201ENST00000216456 PGAP2Q9UHJ9 254 aa28.33■■■□□ 2.13
VTI1B-201ENST00000216456 H7C1D1 291 aa28.32■■■□□ 2.12
VTI1B-201ENST00000216456 CASP7P55210 303 aa28.32■■■□□ 2.12
VTI1B-201ENST00000216456 WDR33Q9C0J8 1336 aaKnown RBP28.32■■■□□ 2.12
VTI1B-201ENST00000216456 CELF2O95319 508 aaKnown RBP28.31■■■□□ 2.12
VTI1B-201ENST00000216456 CYP4F22Q6NT55 531 aa28.31■■■□□ 2.12
VTI1B-201ENST00000216456 PAXIP1Q6ZW49 1069 aaPredicted RBP28.31■■■□□ 2.12
VTI1B-201ENST00000216456 ZNF408Q9H9D4 720 aa28.31■■■□□ 2.12
VTI1B-201ENST00000216456 MINPP1Q9UNW1 487 aa28.31■■■□□ 2.12
VTI1B-201ENST00000216456 SPEF2Q9C093 1822 aa28.31■■■□□ 2.12
VTI1B-201ENST00000216456 XDHP47989 1333 aa28.3■■■□□ 2.12
VTI1B-201ENST00000216456 TNS4Q8IZW8 715 aa28.3■■■□□ 2.12
VTI1B-201ENST00000216456 DPF2Q92785 391 aa28.3■■■□□ 2.12
VTI1B-201ENST00000216456 ASTN2O75129 1339 aaPredicted RBP28.29■■■□□ 2.12
VTI1B-201ENST00000216456 FAM161AQ3B820 660 aa28.29■■■□□ 2.12
VTI1B-201ENST00000216456 USP48Q86UV5 1035 aa28.29■■■□□ 2.12
VTI1B-201ENST00000216456 CDC5LQ99459 802 aaKnown RBP28.29■■■□□ 2.12
VTI1B-201ENST00000216456 TRPM7Q96QT4 1865 aa28.28■■■□□ 2.12
VTI1B-201ENST00000216456 G3V3G9 751 aa28.28■■■□□ 2.12
VTI1B-201ENST00000216456 CAPN15O75808 1086 aa28.28■■■□□ 2.12
VTI1B-201ENST00000216456 VIL1P09327 827 aaKnown RBP28.28■■■□□ 2.12
VTI1B-201ENST00000216456 DCAF8Q5TAQ9 597 aa28.28■■■□□ 2.12
VTI1B-201ENST00000216456 TLL2Q9Y6L7 1015 aa28.28■■■□□ 2.12
VTI1B-201ENST00000216456 LINS1Q8NG48 757 aa28.27■■■□□ 2.12
VTI1B-201ENST00000216456 ZC3H15Q8WU90 426 aaKnown RBP28.27■■■□□ 2.12
VTI1B-201ENST00000216456 CAPNS2Q96L46 248 aa28.27■■■□□ 2.12
VTI1B-201ENST00000216456 BSDC1Q9NW68 430 aaPredicted RBP28.27■■■□□ 2.12
VTI1B-201ENST00000216456 WBP1LQ9NX94 342 aa28.27■■■□□ 2.12
VTI1B-201ENST00000216456 MYH3P11055 1940 aa28.26■■■□□ 2.11
VTI1B-201ENST00000216456 AOC2O75106 756 aa28.25■■■□□ 2.11
VTI1B-201ENST00000216456 ITGA6P23229 1130 aa28.25■■■□□ 2.11
VTI1B-201ENST00000216456 ATP2B4P23634 1241 aa28.25■■■□□ 2.11
VTI1B-201ENST00000216456 KLRK1P26718 216 aa28.25■■■□□ 2.11
VTI1B-201ENST00000216456 TXNRD3Q86VQ6 643 aa28.25■■■□□ 2.11
VTI1B-201ENST00000216456 MXD3Q9BW11 206 aa28.25■■■□□ 2.11
VTI1B-201ENST00000216456 PLA2G12BQ9BX93 195 aa28.25■■■□□ 2.11
VTI1B-201ENST00000216456 ADM5C9JUS6 153 aa28.24■■■□□ 2.11
VTI1B-201ENST00000216456 RPS12P25398 132 aaKnown RBP28.24■■■□□ 2.11
VTI1B-201ENST00000216456 CDC37L1Q7L3B6 337 aa28.24■■■□□ 2.11
VTI1B-201ENST00000216456 SAPCD2Q86UD0 394 aa28.24■■■□□ 2.11
VTI1B-201ENST00000216456 CCT4P50991 539 aaKnown RBP28.23■■■□□ 2.11
VTI1B-201ENST00000216456 KIF4BQ2VIQ3 1234 aa28.23■■■□□ 2.11
VTI1B-201ENST00000216456 BEND3Q5T5X7 828 aa28.23■■■□□ 2.11
VTI1B-201ENST00000216456 MYH16Q9H6N6 1097 aa28.23■■■□□ 2.11
VTI1B-201ENST00000216456 SNAP23O00161 211 aa28.22■■■□□ 2.11
VTI1B-201ENST00000216456 CSF1RP07333 972 aa28.22■■■□□ 2.11
VTI1B-201ENST00000216456 RSBN1LQ6PCB5 846 aaPredicted RBP28.22■■■□□ 2.11
VTI1B-201ENST00000216456 ZNF521Q96K83 1311 aa28.21■■■□□ 2.11
VTI1B-201ENST00000216456 LBX1P52954 281 aa28.21■■■□□ 2.11
VTI1B-201ENST00000216456 EPHA10Q5JZY3 1008 aa28.21■■■□□ 2.11
VTI1B-201ENST00000216456 KRT26Q7Z3Y9 468 aa28.21■■■□□ 2.11
VTI1B-201ENST00000216456 AIDAQ96BJ3 306 aa28.21■■■□□ 2.11
VTI1B-201ENST00000216456 IGHMBP2P38935 993 aaKnown RBP28.2■■■□□ 2.1
VTI1B-201ENST00000216456 FOXO4P98177 505 aa28.2■■■□□ 2.1
VTI1B-201ENST00000216456 SCAF8Q9UPN6 1271 aaKnown RBP28.2■■■□□ 2.1
VTI1B-201ENST00000216456 GMLQ99445 158 aa28.19■■■□□ 2.1
VTI1B-201ENST00000216456 GGA3Q9NZ52 723 aa28.19■■■□□ 2.1
VTI1B-201ENST00000216456 MED23Q9ULK4 1368 aa28.19■■■□□ 2.1
VTI1B-201ENST00000216456 CTCFP49711 727 aaPredicted RBP28.18■■■□□ 2.1
VTI1B-201ENST00000216456 POLR2AP24928 1970 aaKnown RBP28.18■■■□□ 2.1
VTI1B-201ENST00000216456 USP17L3A6NCW0 530 aa28.17■■■□□ 2.1
VTI1B-201ENST00000216456 USP17L4A6NCW7 530 aa28.17■■■□□ 2.1
VTI1B-201ENST00000216456 HSPA8P11142 646 aaKnown RBP28.17■■■□□ 2.1
VTI1B-201ENST00000216456 ZNF280AP59817 542 aaPredicted RBP28.17■■■□□ 2.1
VTI1B-201ENST00000216456 USP17L1Q7RTZ2 530 aa28.17■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms