RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 ZNF227Q86WZ6 799 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 LINC01555Q8NAE3 123 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 NPEPL1Q8NDH3 523 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 TRMT10AQ8TBZ6 339 aaKnown RBP4.85□□□□□ -1.63
SYNE1-220ENST00000471834 ZG16BQ96DA0 208 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 PRDM13Q9H4Q3 707 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 SEC61A2Q9H9S3 476 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 SPHK1Q9NYA1 384 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 DKKL1Q9UK85 242 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 ZNF337Q9Y3M9 751 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 GGT3PA6NGU5 568 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 ZNF726A6NNF4 738 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 C8AP07357 584 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 COL9A1P20849 921 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 CXCR1P25024 350 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 CTSSP25774 331 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 HTR2AP28223 471 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 MPIP34949 423 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 ARHGAP11AQ6P4F7 1023 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 SLC35F3Q8IY50 421 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 MUC20Q8N307 709 aaPredicted RBP4.85□□□□□ -1.63
SYNE1-220ENST00000471834 SGK3Q96BR1 496 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 MSANTD3Q96H12 275 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 BEX1Q9HBH7 125 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 SPHK2Q9NRA0 654 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 ZCCHC3Q9NUD5 404 aaKnown RBP4.85□□□□□ -1.63
SYNE1-220ENST00000471834 FLRT3Q9NZU0 649 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 KANTRA0A1W2PQU2 76 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 MYADML2A6NDP7 307 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 NPIPA5E9PKD4 350 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 LINC01387J3KSC0 135 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 PRNPP04156 253 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 RPE65Q16518 533 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 RFLNAQ6ZTI6 216 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 SVBPQ8N300 66 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 LRRC18Q8N456 261 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 FAM3CQ92520 227 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 TRIM43Q96BQ3 446 aaPredicted RBP4.85□□□□□ -1.63
SYNE1-220ENST00000471834 ASB16Q96NS5 453 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 PARP11Q9NR21 331 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 GDE1Q9NZC3 331 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 ATXN7L1Q9ULK2 861 aaPredicted RBP4.85□□□□□ -1.63
SYNE1-220ENST00000471834 NPIPA1Q9UND3 350 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 B3GALT1Q9Y5Z6 326 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 TTC3P53804 2025 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 H0YIZ8 118 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 M0R3H8 397 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 WRBO00258 174 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 MFNGO00587 321 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 ITGA5P08648 1049 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 HOXB2P14652 356 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 CAV2P51636 162 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 RND2P52198 227 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 ART1P52961 327 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 SNU13P55769 128 aaKnown RBP4.85□□□□□ -1.63
SYNE1-220ENST00000471834 OR12D2P58182 307 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 CFAP77Q6ZQR2 320 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 CCDC54Q8NEL0 328 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 OR5K2Q8NHB8 316 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 TIMM29Q9BSF4 260 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 TRPV4Q9HBA0 871 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 KIF26AQ9ULI4 1882 aaPredicted RBP4.84□□□□□ -1.63
SYNE1-220ENST00000471834 CCDC187A0A096LP49 1063 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 A0A1W2PR48 441 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 C11orf98E9PRG8 122 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 EFSO43281 561 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 SSX5O60225 188 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 APBB3O95704 486 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 HCKP08631 526 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 CRYZQ08257 329 aaKnown RBP4.84□□□□□ -1.63
SYNE1-220ENST00000471834 KHDC1LQ5JSQ8 128 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 PRAMEF14Q5SWL7 426 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 PRAMEF13Q5VWM6 474 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 Q6ZVU0 165 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 BAP18Q8IXM2 172 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 GALNT16Q8N428 558 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 GTF3AQ92664 365 aaKnown RBP4.84□□□□□ -1.63
SYNE1-220ENST00000471834 KLHDC7BQ96G42 594 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 TMEM41AQ96HV5 264 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 ZNF471Q9BX82 626 aaPredicted RBP4.84□□□□□ -1.63
SYNE1-220ENST00000471834 TLNRD1Q9H1K6 362 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 PDE7BQ9NP56 450 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 TDP1Q9NUW8 608 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 FLVCR1Q9Y5Y0 555 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 MKRN2OSH3BPM6 223 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 CTSVO60911 334 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 CD70P32970 193 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 RAB28P51157 221 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 OR2W3Q7Z3T1 314 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 GRASPQ7Z6J2 395 aaPredicted RBP4.84□□□□□ -1.63
SYNE1-220ENST00000471834 Q8NFD4 153 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 OR1J2Q8NGS2 313 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 OR2L8Q8NGY9 312 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 SLC22A8Q8TCC7 542 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 SDF2Q99470 211 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 RAB11FIP5Q9BXF6 653 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 OR51I1Q9H343 314 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 EGLN3Q9H6Z9 239 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 KLRF1Q9NZS2 232 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 LAMP5Q9UJQ1 280 aa4.84□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms