RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 PVALBP20472 110 aaPredicted RBP7.84□□□□□ -1.15
USP40-203ENST00000427112 DPP4P27487 766 aa7.84□□□□□ -1.15
USP40-203ENST00000427112 FOXK1P85037 733 aa7.84□□□□□ -1.15
USP40-203ENST00000427112 FHL1Q13642 323 aa7.84□□□□□ -1.15
USP40-203ENST00000427112 WDR38Q5JTN6 314 aa7.84□□□□□ -1.15
USP40-203ENST00000427112 RPL22L1Q6P5R6 122 aaKnown RBP7.84□□□□□ -1.15
USP40-203ENST00000427112 TMPPEQ6ZT21 453 aa7.84□□□□□ -1.15
USP40-203ENST00000427112 PXKQ7Z7A4 578 aa7.84□□□□□ -1.15
USP40-203ENST00000427112 LRRTM1Q86UE6 522 aa7.84□□□□□ -1.15
USP40-203ENST00000427112 MCATQ8IVS2 390 aaKnown RBP7.84□□□□□ -1.15
USP40-203ENST00000427112 METTL21AQ8WXB1 218 aa7.84□□□□□ -1.15
USP40-203ENST00000427112 TAAR8Q969N4 342 aa7.84□□□□□ -1.15
USP40-203ENST00000427112 MRGPRX1Q96LB2 322 aa7.84□□□□□ -1.15
USP40-203ENST00000427112 TIMM29Q9BSF4 260 aa7.84□□□□□ -1.15
USP40-203ENST00000427112 SOX7Q9BT81 388 aa7.84□□□□□ -1.15
USP40-203ENST00000427112 SLC6A15Q9H2J7 730 aa7.84□□□□□ -1.15
USP40-203ENST00000427112 ASF1BQ9NVP2 202 aa7.84□□□□□ -1.15
USP40-203ENST00000427112 GSKIPQ9P0R6 139 aa7.84□□□□□ -1.15
USP40-203ENST00000427112 POLEQ07864 2286 aa7.84□□□□□ -1.15
USP40-203ENST00000427112 hCG_1807616A0A1W2PRN6 198 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 P2RY10O00398 339 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 XKRYO14609 159 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 TBX19O60806 448 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 SERPINA3P01011 423 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 RRASP10301 218 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 PPP3CBP16298 524 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 TPMTP51580 245 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 MGAT2Q10469 447 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 PAN3Q58A45 887 aaKnown RBP7.83□□□□□ -1.16
USP40-203ENST00000427112 RNLSQ5VYX0 342 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 OLFML2AQ68BL7 652 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 GPAT4Q86UL3 456 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 SAMD14Q8IZD0 417 aaPredicted RBP7.83□□□□□ -1.16
USP40-203ENST00000427112 TMEM185AQ8NFB2 350 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 SARGQ9BW04 601 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 RAB11FIP5Q9BXF6 653 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 WDR13Q9H1Z4 485 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 ISYNA1Q9NPH2 558 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 IFT46Q9NQC8 304 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 HEBP2Q9Y5Z4 205 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 TICRRQ7Z2Z1 1910 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 SERINC4A6NH21 518 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 DISC1C4P0D8 188 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 MCRIP1C9JLW8 97 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 AIPO00170 330 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 ADAM10O14672 748 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 ICOSLGO75144 302 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 ZNF10P21506 573 aaPredicted RBP7.83□□□□□ -1.16
USP40-203ENST00000427112 FCARP24071 287 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 TAS2R43P59537 309 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 C19orf57Q0VDD7 668 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 ALKBH1Q13686 389 aaKnown RBP7.83□□□□□ -1.16
USP40-203ENST00000427112 CLINT1Q14677 625 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 MFSD13AQ14CX5 517 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 COL28A1Q2UY09 1125 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 ZNF546Q86UE3 836 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 TPRA1Q86W33 373 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 DND1Q8IYX4 353 aaKnown RBP7.83□□□□□ -1.16
USP40-203ENST00000427112 TSNAXQ99598 290 aaKnown RBP7.83□□□□□ -1.16
USP40-203ENST00000427112 EPHA6Q9UF33 1036 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 ROS1P08922 2347 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 ZFHX4Q86UP3 3567 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 TMEM272A0A1B0GTI8 110 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 A0A1W2PP11 408 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 SLC22A23A1A5C7 686 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 PRSS44E7EML9 344 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 F5H5P2 479 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 CT45A8P0DMV1 189 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 CT45A9P0DMV2 189 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 CXCR1P25024 350 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 SEC61A1P61619 476 aaKnown RBP7.83□□□□□ -1.16
USP40-203ENST00000427112 FGL1Q08830 312 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 SLC9A3R2Q15599 337 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 INPP5JQ15735 1006 aaPredicted RBP7.83□□□□□ -1.16
USP40-203ENST00000427112 TMEM44Q2T9K0 475 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 CT45A2Q5DJT8 189 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 MESTQ5EB52 335 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 METTL11BQ5VVY1 283 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 PRSS42Q7Z5A4 293 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 BEST3Q8N1M1 668 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 PRSS35Q8N3Z0 413 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 BHLHE23Q8NDY6 225 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 OR10K1Q8NGX5 313 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 OR2G2Q8NGZ5 317 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 BANF2Q9H503 90 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 TREM1Q9NP99 234 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 ZNF337Q9Y3M9 751 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 NPFFR2Q9Y5X5 522 aa7.83□□□□□ -1.16
USP40-203ENST00000427112 A0A1W2PQF6 199 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 SLC25A12O75746 678 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 ATG12O94817 140 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 RAB3DO95716 219 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 ADH1BP00325 375 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 NMBP08949 121 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 HNRNPA1P09651 372 aaKnown RBP eCLIP7.82□□□□□ -1.16
USP40-203ENST00000427112 CFL1P23528 166 aaKnown RBP7.82□□□□□ -1.16
USP40-203ENST00000427112 DNASE1L1P49184 302 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 ACTC1P68032 377 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 ACTA1P68133 377 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 GSG1LQ6UXU4 331 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms