RNA–Protein interactions for RNA: ENST00000417997.1

HMGB3P20-201, Transcript of high mobility group box 3 pseudogene 20, humanhuman

BASIC

Gene HMGB3P20, Length 600 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P20-201ENST00000417997 STPG1Q5TH74 334 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 FAM69BQ5VUD6 431 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 SLX4IPQ5VYV7 408 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 TMEM236Q5W0B7 351 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 C12orf73Q69YU5 71 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 ZNF770Q6IQ21 691 aaPredicted RBP3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 LCN10Q6JVE6 187 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 SLC27A4Q6P1M0 643 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 C1orf94Q6P1W5 598 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 FAM199XQ6PEV8 388 aaPredicted RBP3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 ULK3Q6PHR2 472 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 ZNF773Q6PK81 442 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 TMEM205Q6UW68 189 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 IL20RBQ6UXL0 311 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 ZNF620Q6ZNG0 422 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 RASSF6Q6ZTQ3 369 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 AHSA2Q719I0 299 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 SHFQ7M4L6 423 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 GPR141Q7Z602 305 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 MOGAT3Q86VF5 341 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 MEX3DQ86XN8 651 aaKnown RBP3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 MISPQ8IVT2 679 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 NKAIN4Q8IVV8 208 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 ENTHD1Q8IYW4 607 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 RNF113BQ8IZP6 322 aaKnown RBP3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 MUC20Q8N307 709 aaPredicted RBP3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 STX19Q8N4C7 294 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 ESX1Q8N693 406 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 C10orf53Q8N6V4 93 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 ZNF540Q8NDQ6 660 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 OR2Y1Q8NGV0 311 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 OR4C3Q8NH37 302 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 OR8K3Q8NH51 312 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 PFN4Q8NHR9 129 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 CT55Q8WUE5 264 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 OSTF1Q92882 214 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 MYDGFQ969H8 173 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 OTULINQ96BN8 352 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 ARSGQ96EG1 525 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 SGTBQ96EQ0 304 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 Q96MT0 163 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 CCNL2Q96S94 520 aaPredicted RBP3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 FUZQ9BT04 418 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 TSSK6Q9BXA6 273 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 FAM192AQ9GZU8 254 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 LAT2Q9GZY6 243 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 DSN1Q9H410 356 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 EGLN3Q9H6Z9 239 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 METTL7AQ9H8H3 244 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 LIN28AQ9H9Z2 209 aaKnown RBP3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 SLC25A19Q9HC21 320 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 ZBTB20Q9HC78 741 aaPredicted RBP3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 HHATLQ9HCP6 504 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 EXOSC3Q9NQT5 275 aaKnown RBP3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 SDHAF3Q9NRP4 125 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 MAN2C1Q9NTJ4 1040 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 ANKRD10Q9NXR5 420 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 TVP23BQ9NYZ1 205 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 FLRT3Q9NZU0 649 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 CNIH4Q9P003 139 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 NDUFA13Q9P0J0 144 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 ZNF223Q9UK11 482 aaPredicted RBP3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 PADI1Q9ULC6 663 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 RNF6Q9Y252 685 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 CARD8Q9Y2G2 431 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 CDH10Q9Y6N8 788 aa3.39□□□□□ -1.87
HMGB3P20-201ENST00000417997 SPAARA0A1B0GVQ0 90 aa3.38□□□□□ -1.87
HMGB3P20-201ENST00000417997 IRGMA1A4Y4 181 aa3.38□□□□□ -1.87
HMGB3P20-201ENST00000417997 C21orf140B9A014 251 aa3.38□□□□□ -1.87
HMGB3P20-201ENST00000417997 PRAC2D3DTV9 90 aa3.38□□□□□ -1.87
HMGB3P20-201ENST00000417997 PTGES3LE9PB15 166 aa3.38□□□□□ -1.87
HMGB3P20-201ENST00000417997 M0R129 80 aa3.38□□□□□ -1.87
HMGB3P20-201ENST00000417997 M0R3G1 203 aa3.38□□□□□ -1.87
HMGB3P20-201ENST00000417997 TP53I11O14683 189 aa3.38□□□□□ -1.87
HMGB3P20-201ENST00000417997 MYL12BO14950 172 aa3.38□□□□□ -1.87
HMGB3P20-201ENST00000417997 XPNPEP2O43895 674 aa3.38□□□□□ -1.87
HMGB3P20-201ENST00000417997 CDC40O60508 579 aaKnown RBP eCLIP3.38□□□□□ -1.87
HMGB3P20-201ENST00000417997 EIF4E2O60573 245 aaKnown RBP3.38□□□□□ -1.87
HMGB3P20-201ENST00000417997 MRPS14O60783 128 aaKnown RBP3.38□□□□□ -1.87
HMGB3P20-201ENST00000417997 BCAS1O75363 584 aaPredicted RBP3.38□□□□□ -1.87
HMGB3P20-201ENST00000417997 OR2J2O76002 312 aa3.38□□□□□ -1.87
HMGB3P20-201ENST00000417997 TNFSF15O95150 251 aa3.38□□□□□ -1.87
HMGB3P20-201ENST00000417997 RCBTB2O95199 551 aa3.38□□□□□ -1.87
HMGB3P20-201ENST00000417997 AHSA1O95433 338 aa3.38□□□□□ -1.87
HMGB3P20-201ENST00000417997 FADS2O95864 444 aaKnown RBP3.38□□□□□ -1.87
HMGB3P20-201ENST00000417997 HPP00738 406 aa3.38□□□□□ -1.87
HMGB3P20-201ENST00000417997 IFNGP01579 166 aa3.38□□□□□ -1.87
HMGB3P20-201ENST00000417997 HMGN1P05114 100 aa3.38□□□□□ -1.87
HMGB3P20-201ENST00000417997 IGHV4-30-4P0DP06 118 aa3.38□□□□□ -1.87
HMGB3P20-201ENST00000417997 ZNF3P17036 446 aa3.38□□□□□ -1.87
HMGB3P20-201ENST00000417997 CCNA2P20248 432 aa3.38□□□□□ -1.87
HMGB3P20-201ENST00000417997 PAICSP22234 425 aaKnown RBP3.38□□□□□ -1.87
HMGB3P20-201ENST00000417997 CXCR1P25024 350 aa3.38□□□□□ -1.87
HMGB3P20-201ENST00000417997 EPHA2P29317 976 aa3.38□□□□□ -1.87
HMGB3P20-201ENST00000417997 RBMS1P29558 406 aaKnown RBP3.38□□□□□ -1.87
HMGB3P20-201ENST00000417997 SLC6A6P31641 620 aa3.38□□□□□ -1.87
HMGB3P20-201ENST00000417997 TTKP33981 857 aa3.38□□□□□ -1.87
HMGB3P20-201ENST00000417997 RPL4P36578 427 aaKnown RBP3.38□□□□□ -1.87
HMGB3P20-201ENST00000417997 DLSTP36957 453 aa3.38□□□□□ -1.87
HMGB3P20-201ENST00000417997 NBL1P41271 181 aa3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms