RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 SLC30A7Q8NEW0 376 aa16.42■□□□□ 0.22
CCDC28A-203ENST00000617445 FNDC8Q8TC99 324 aa16.42■□□□□ 0.22
CCDC28A-203ENST00000617445 HPS1Q92902 700 aa16.42■□□□□ 0.22
CCDC28A-203ENST00000617445 RCN3Q96D15 328 aa16.42■□□□□ 0.22
CCDC28A-203ENST00000617445 SH3GL3Q99963 347 aa16.42■□□□□ 0.22
CCDC28A-203ENST00000617445 BPESC1Q9GZL8 116 aa16.42■□□□□ 0.22
CCDC28A-203ENST00000617445 SHARPINQ9H0F6 387 aa16.42■□□□□ 0.22
CCDC28A-203ENST00000617445 KCNN2Q9H2S1 579 aa16.42■□□□□ 0.22
CCDC28A-203ENST00000617445 GPR160Q9UJ42 338 aa16.42■□□□□ 0.22
CCDC28A-203ENST00000617445 ZNF346Q9UL40 294 aaKnown RBP16.42■□□□□ 0.22
CCDC28A-203ENST00000617445 KCNS2Q9ULS6 477 aa16.42■□□□□ 0.22
CCDC28A-203ENST00000617445 IGHV4-61A0A0C4DH41 118 aa16.41■□□□□ 0.22
CCDC28A-203ENST00000617445 LOC100289279A0A1B0GTE1 492 aa16.41■□□□□ 0.22
CCDC28A-203ENST00000617445 IQCMA0A1B0GVH7 501 aa16.41■□□□□ 0.22
CCDC28A-203ENST00000617445 TRMUO75648 421 aaKnown RBP16.41■□□□□ 0.22
CCDC28A-203ENST00000617445 IGFBP1P08833 259 aaPredicted RBP16.41■□□□□ 0.22
CCDC28A-203ENST00000617445 TACSTD2P09758 323 aa16.41■□□□□ 0.22
CCDC28A-203ENST00000617445 PATE4P0C8F1 98 aa16.41■□□□□ 0.22
CCDC28A-203ENST00000617445 THBS2P35442 1172 aa16.41■□□□□ 0.22
CCDC28A-203ENST00000617445 CHN2P52757 468 aa16.41■□□□□ 0.22
CCDC28A-203ENST00000617445 RUNX1T1Q06455 604 aa16.41■□□□□ 0.22
CCDC28A-203ENST00000617445 ARMC4Q5T2S8 1044 aa16.41■□□□□ 0.22
CCDC28A-203ENST00000617445 SLC15A3Q8IY34 581 aa16.41■□□□□ 0.22
CCDC28A-203ENST00000617445 ZCCHC24Q8N2G6 241 aaKnown RBP16.41■□□□□ 0.22
CCDC28A-203ENST00000617445 FGFBP3Q8TAT2 258 aa16.41■□□□□ 0.22
CCDC28A-203ENST00000617445 ZNF347Q96SE7 839 aa16.41■□□□□ 0.22
CCDC28A-203ENST00000617445 TXNIPQ9H3M7 391 aa16.41■□□□□ 0.22
CCDC28A-203ENST00000617445 EFCAB1Q9HAE3 211 aa16.41■□□□□ 0.22
CCDC28A-203ENST00000617445 SIAEQ9HAT2 523 aa16.41■□□□□ 0.22
CCDC28A-203ENST00000617445 ARMCX1Q9P291 453 aa16.41■□□□□ 0.22
CCDC28A-203ENST00000617445 A4GNTQ9UNA3 340 aa16.41■□□□□ 0.22
CCDC28A-203ENST00000617445 HIF3AQ9Y2N7 669 aa16.41■□□□□ 0.22
CCDC28A-203ENST00000617445 FBN1P35555 2871 aaKnown RBP16.4■□□□□ 0.22
CCDC28A-203ENST00000617445 SNAP29O95721 258 aa16.4■□□□□ 0.22
CCDC28A-203ENST00000617445 IFNW1P05000 195 aa16.4■□□□□ 0.22
CCDC28A-203ENST00000617445 COX4I1P13073 169 aa16.4■□□□□ 0.22
CCDC28A-203ENST00000617445 ZNF16P17020 682 aaPredicted RBP16.4■□□□□ 0.22
CCDC28A-203ENST00000617445 MDH1P40925 334 aaKnown RBP16.4■□□□□ 0.22
CCDC28A-203ENST00000617445 RAD52P43351 418 aa16.4■□□□□ 0.22
CCDC28A-203ENST00000617445 MRPS34P82930 218 aaKnown RBP16.4■□□□□ 0.22
CCDC28A-203ENST00000617445 RIN1Q13671 783 aa16.4■□□□□ 0.22
CCDC28A-203ENST00000617445 RNF113BQ8IZP6 322 aaKnown RBP16.4■□□□□ 0.22
CCDC28A-203ENST00000617445 OFCC1Q8IZS5 231 aa16.4■□□□□ 0.22
CCDC28A-203ENST00000617445 SYT14Q8NB59 555 aa16.4■□□□□ 0.22
CCDC28A-203ENST00000617445 MSI2Q96DH6 328 aaKnown RBP16.4■□□□□ 0.22
CCDC28A-203ENST00000617445 BPIFA2Q96DR5 249 aa16.4■□□□□ 0.22
CCDC28A-203ENST00000617445 FNDC11Q9BVV2 318 aa16.4■□□□□ 0.22
CCDC28A-203ENST00000617445 CDH20Q9HBT6 801 aa16.4■□□□□ 0.22
CCDC28A-203ENST00000617445 CMTM6Q9NX76 183 aa16.4■□□□□ 0.22
CCDC28A-203ENST00000617445 STAB1Q9NY15 2570 aa16.4■□□□□ 0.22
CCDC28A-203ENST00000617445 LIPEQ05469 1076 aa16.39■□□□□ 0.21
CCDC28A-203ENST00000617445 LAPTM4AQ15012 233 aa16.39■□□□□ 0.21
CCDC28A-203ENST00000617445 TRAM2Q15035 370 aa16.39■□□□□ 0.21
CCDC28A-203ENST00000617445 MSMPQ1L6U9 139 aa16.39■□□□□ 0.21
CCDC28A-203ENST00000617445 TBC1D28Q2M2D7 210 aa16.39■□□□□ 0.21
CCDC28A-203ENST00000617445 ALG10Q5BKT4 473 aa16.39■□□□□ 0.21
CCDC28A-203ENST00000617445 FAM205BPQ63HN1 556 aa16.39■□□□□ 0.21
CCDC28A-203ENST00000617445 RGS7BPQ6MZT1 257 aaPredicted RBP16.39■□□□□ 0.21
CCDC28A-203ENST00000617445 HACD2Q6Y1H2 254 aa16.39■□□□□ 0.21
CCDC28A-203ENST00000617445 POU5F2Q8N7G0 328 aa16.39■□□□□ 0.21
CCDC28A-203ENST00000617445 RBM15BQ8NDT2 890 aaKnown RBP16.39■□□□□ 0.21
CCDC28A-203ENST00000617445 MOSPD2Q8NHP6 518 aa16.39■□□□□ 0.21
CCDC28A-203ENST00000617445 GEMIN6Q8WXD5 167 aaKnown RBP16.39■□□□□ 0.21
CCDC28A-203ENST00000617445 RBP7Q96R05 134 aa16.39■□□□□ 0.21
CCDC28A-203ENST00000617445 SYT3Q9BQG1 590 aa16.39■□□□□ 0.21
CCDC28A-203ENST00000617445 ALG12Q9BV10 488 aa16.39■□□□□ 0.21
CCDC28A-203ENST00000617445 BCL2L14Q9BZR8 327 aa16.39■□□□□ 0.21
CCDC28A-203ENST00000617445 DUSP13Q9UII6 198 aa16.39■□□□□ 0.21
CCDC28A-203ENST00000617445 CXCR6O00574 342 aa16.38■□□□□ 0.21
CCDC28A-203ENST00000617445 GSTA4O15217 222 aa16.38■□□□□ 0.21
CCDC28A-203ENST00000617445 IFI30P13284 250 aa16.38■□□□□ 0.21
CCDC28A-203ENST00000617445 HNF1AP20823 631 aa16.38■□□□□ 0.21
CCDC28A-203ENST00000617445 MRPS11P82912 194 aaKnown RBP16.38■□□□□ 0.21
CCDC28A-203ENST00000617445 MYBPC1Q00872 1141 aa16.38■□□□□ 0.21
CCDC28A-203ENST00000617445 MOGQ16653 247 aa16.38■□□□□ 0.21
CCDC28A-203ENST00000617445 THEM4Q5T1C6 240 aa16.38■□□□□ 0.21
CCDC28A-203ENST00000617445 UNQ6126/PRO20091Q6UXV3 157 aa16.38■□□□□ 0.21
CCDC28A-203ENST00000617445 ZNF519Q8TB69 540 aa16.38■□□□□ 0.21
CCDC28A-203ENST00000617445 C11orf40Q8WZ69 217 aa16.38■□□□□ 0.21
CCDC28A-203ENST00000617445 NMD3Q96D46 503 aaKnown RBP16.38■□□□□ 0.21
CCDC28A-203ENST00000617445 TPK1Q9H3S4 243 aa16.38■□□□□ 0.21
CCDC28A-203ENST00000617445 CHODLQ9H9P2 273 aa16.38■□□□□ 0.21
CCDC28A-203ENST00000617445 SLCO1C1Q9NYB5 712 aa16.38■□□□□ 0.21
CCDC28A-203ENST00000617445 LILRA1O75019 489 aa16.37■□□□□ 0.21
CCDC28A-203ENST00000617445 TGFAP01135 160 aa16.37■□□□□ 0.21
CCDC28A-203ENST00000617445 IGHMP01871 453 aa16.37■□□□□ 0.21
CCDC28A-203ENST00000617445 MMP7P09237 267 aaPredicted RBP16.37■□□□□ 0.21
CCDC28A-203ENST00000617445 ZNF250P15622 560 aa16.37■□□□□ 0.21
CCDC28A-203ENST00000617445 APLNRP35414 380 aa16.37■□□□□ 0.21
CCDC28A-203ENST00000617445 GUCA1AP43080 201 aaPredicted RBP16.37■□□□□ 0.21
CCDC28A-203ENST00000617445 SLC9A3P48764 834 aa16.37■□□□□ 0.21
CCDC28A-203ENST00000617445 UCP2P55851 309 aa16.37■□□□□ 0.21
CCDC28A-203ENST00000617445 RPL27P61353 136 aaKnown RBP16.37■□□□□ 0.21
CCDC28A-203ENST00000617445 HSF2Q03933 536 aa16.37■□□□□ 0.21
CCDC28A-203ENST00000617445 PRKCDQ05655 676 aa16.37■□□□□ 0.21
CCDC28A-203ENST00000617445 CD47Q08722 323 aa16.37■□□□□ 0.21
CCDC28A-203ENST00000617445 IFI44LQ53G44 452 aa16.37■□□□□ 0.21
CCDC28A-203ENST00000617445 CBLL1Q75N03 491 aa16.37■□□□□ 0.21
CCDC28A-203ENST00000617445 C1orf174Q8IYL3 243 aa16.37■□□□□ 0.21
CCDC28A-203ENST00000617445 LRRC18Q8N456 261 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms