RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 FOXRED2Q8IWF2 684 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 C1orf87Q8N0U7 546 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 BPIFB2Q8N4F0 458 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 LINC01465Q8N7H1 131 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 DNAJC5GQ8N7S2 189 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 TM4SF18Q96CE8 201 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 WDFY2Q96P53 400 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 MBOAT4Q96T53 435 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 FOCADQ5VW36 1801 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 A0A1W2PQ09 198 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 H0YIG0 161 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 SULT2B1O00204 365 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 ALX3O95076 343 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 AIFM1O95831 613 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 CBX7O95931 251 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 ATP1B1P05026 303 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 ALDOCP09972 364 aaKnown RBP7.19□□□□□ -1.26
VPS13D-211ENST00000543710 FASLGP48023 281 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 RAB7AP51149 207 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 MPPED2Q15777 294 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 C6orf183Q5T699 404 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 OR10K2Q6IF99 312 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 TMEM184AQ6ZMB5 413 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 HSD11B1LQ7Z5J1 315 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 RIMKLAQ8IXN7 391 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 TMEM229BQ8NBD8 167 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 CPNE4Q96A23 557 aaPredicted RBP7.19□□□□□ -1.26
VPS13D-211ENST00000543710 LIN37Q96GY3 246 aaPredicted RBP7.19□□□□□ -1.26
VPS13D-211ENST00000543710 ACTL7AQ9Y615 435 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 A0A0G2JN53 185 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 MDFIC2A0A1B0GVS7 189 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 A0A1W2PPV4 95 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 LGALS8O00214 317 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 AQP8O94778 261 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 HLA-AP01891 365 aaKnown RBP7.19□□□□□ -1.26
VPS13D-211ENST00000543710 RAB5AP20339 215 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 SOX3P41225 446 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 SLC10A1Q14973 349 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 RTL8BQ17RB0 113 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 LRRC73Q5JTD7 316 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 B3GNTL1Q67FW5 361 aaPredicted RBP7.19□□□□□ -1.26
VPS13D-211ENST00000543710 CLEC2AQ6UVW9 174 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 APOOLQ6UXV4 268 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 PARS2Q7L3T8 475 aaKnown RBP7.19□□□□□ -1.26
VPS13D-211ENST00000543710 ZNF546Q86UE3 836 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 KHSRPQ92945 711 aaKnown RBP eCLIP7.19□□□□□ -1.261e-6■■□□□ 12.3
VPS13D-211ENST00000543710 DAZAP1Q96EP5 407 aaKnown RBP7.19□□□□□ -1.26
VPS13D-211ENST00000543710 RBCK1Q9BYM8 510 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 TP53TG5Q9Y2B4 290 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 LOC100509620A0A075B734 347 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 BOLA2-SMG1P6H3BVE0 249 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 BCKDHBP21953 392 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 PSMB3P49720 205 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 CARD17Q5XLA6 110 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 COMTD1Q86VU5 262 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 ZNF610Q8N9Z0 462 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 KDF1Q8NAX2 398 aaPredicted RBP7.19□□□□□ -1.26
VPS13D-211ENST00000543710 ZNF418Q8TF45 676 aaPredicted RBP7.19□□□□□ -1.26
VPS13D-211ENST00000543710 ST8SIA1Q92185 356 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 PEX11GQ96HA9 241 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 CXorf58Q96LI9 332 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 C10orf90Q96M02 699 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 CIB3Q96Q77 187 aaPredicted RBP7.19□□□□□ -1.26
VPS13D-211ENST00000543710 TMEM43Q9BTV4 400 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 ZNF416Q9BWM5 594 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 ESRP2Q9H6T0 727 aaKnown RBP7.19□□□□□ -1.26
VPS13D-211ENST00000543710 ZNF275Q9NSD4 429 aaPredicted RBP7.19□□□□□ -1.26
VPS13D-211ENST00000543710 COL5A3P25940 1745 aaPredicted RBP7.19□□□□□ -1.26
VPS13D-211ENST00000543710 TSPAN11A1L157 253 aa7.18□□□□□ -1.26
VPS13D-211ENST00000543710 PRAMEF27A3QJZ7 478 aa7.18□□□□□ -1.26
VPS13D-211ENST00000543710 ZNF814B7Z6K7 855 aa7.18□□□□□ -1.26
VPS13D-211ENST00000543710 C21orf140B9A014 251 aa7.18□□□□□ -1.26
VPS13D-211ENST00000543710 ARPC5O15511 151 aa7.18□□□□□ -1.26
VPS13D-211ENST00000543710 CTNSO60931 367 aa7.18□□□□□ -1.26
VPS13D-211ENST00000543710 GASTP01350 101 aa7.18□□□□□ -1.26
VPS13D-211ENST00000543710 PTPN6P29350 595 aa7.18□□□□□ -1.26
VPS13D-211ENST00000543710 GDNFP39905 211 aa7.18□□□□□ -1.26
VPS13D-211ENST00000543710 HTR6P50406 440 aa7.18□□□□□ -1.26
VPS13D-211ENST00000543710 OLIG2Q13516 323 aa7.18□□□□□ -1.26
VPS13D-211ENST00000543710 ADPRMQ3LIE5 342 aa7.18□□□□□ -1.26
VPS13D-211ENST00000543710 PAN3Q58A45 887 aaKnown RBP7.18□□□□□ -1.26
VPS13D-211ENST00000543710 PRAMEF9Q5VWM5 478 aa7.18□□□□□ -1.26
VPS13D-211ENST00000543710 JMJD6Q6NYC1 403 aaPredicted RBP7.18□□□□□ -1.26
VPS13D-211ENST00000543710 FAHD1Q6P587 224 aa7.18□□□□□ -1.26
VPS13D-211ENST00000543710 PLXDC2Q6UX71 529 aa7.18□□□□□ -1.26
VPS13D-211ENST00000543710 FGGYQ96C11 551 aa7.18□□□□□ -1.26
VPS13D-211ENST00000543710 RAB3CQ96E17 227 aa7.18□□□□□ -1.26
VPS13D-211ENST00000543710 GIMAP2Q9UG22 337 aa7.18□□□□□ -1.26
VPS13D-211ENST00000543710 NDRG4Q9ULP0 352 aaKnown RBP7.18□□□□□ -1.26
VPS13D-211ENST00000543710 OSGIN2Q9Y236 505 aa7.18□□□□□ -1.26
VPS13D-211ENST00000543710 MRPS28Q9Y2Q9 187 aaKnown RBP7.18□□□□□ -1.26
VPS13D-211ENST00000543710 CACNA1GO43497 2377 aa7.18□□□□□ -1.26
VPS13D-211ENST00000543710 SLC35F4A4IF30 521 aa7.18□□□□□ -1.26
VPS13D-211ENST00000543710 KDM4EB2RXH2 506 aaPredicted RBP7.18□□□□□ -1.26
VPS13D-211ENST00000543710 MCRIP1C9JLW8 97 aa7.18□□□□□ -1.26
VPS13D-211ENST00000543710 C5orf67F2Z3F1 127 aa7.18□□□□□ -1.26
VPS13D-211ENST00000543710 GPR171O14626 319 aa7.18□□□□□ -1.26
VPS13D-211ENST00000543710 CDX4O14627 284 aaPredicted RBP7.18□□□□□ -1.26
VPS13D-211ENST00000543710 XRCC2O43543 280 aa7.18□□□□□ -1.26
VPS13D-211ENST00000543710 JTBO76095 146 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 104.4 ms