RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 SCDO00767 359 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 CLDN4O14493 209 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 ADAM12O43184 909 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 SCO1O75880 301 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 SNTB1Q13884 538 aaKnown RBP4.86□□□□□ -1.63
SYNE1-220ENST00000471834 GK2Q14410 553 aaPredicted RBP4.86□□□□□ -1.63
SYNE1-220ENST00000471834 BEND4Q6ZU67 534 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 MRPL52Q86TS9 123 aaKnown RBP4.86□□□□□ -1.63
SYNE1-220ENST00000471834 TMEM151BQ8IW70 566 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 SLC39A11Q8N1S5 342 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 TMEM156Q8N614 296 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 CDS1Q92903 461 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 SLC22A12Q96S37 553 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 MYO10Q9HD67 2058 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 PPP4R1LQ9P1A2 415 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 OR2AT4A6NND4 320 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 THBS4P35443 961 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 ACAA2P42765 397 aaKnown RBP4.86□□□□□ -1.63
SYNE1-220ENST00000471834 CX3CR1P49238 355 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 PNLIPRP2P54317 469 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 ZNF234Q14588 700 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 METRNLQ641Q3 311 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 C5orf46Q6UWT4 87 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 LRRN1Q6UXK5 716 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 Q6ZVL8 140 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 UBALD2Q8IYN6 164 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 PLPP7Q8NBV4 271 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 TNFAIP8L1Q8WVP5 186 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 TCEAL7Q9BRU2 100 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 UPB1Q9UBR1 384 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 C13orf42A0A1B0GVH6 325 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 ELOA3DA6NLF2 546 aaPredicted RBP4.86□□□□□ -1.63
SYNE1-220ENST00000471834 TSPAN6O43657 245 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 FCMRO60667 390 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 SLC35G6P0C7Q6 338 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 ELOA3BQ3SY89 546 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 VAX1Q5SQQ9 334 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 TMEM244Q5VVB8 128 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 DCAF12L2Q5VW00 463 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 GLCCI1Q86VQ1 547 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 ELOA3Q8NG57 546 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 OR52E1Q8NGJ3 308 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 COQ8AQ8NI60 647 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 ZFPM2Q8WW38 1151 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 OR1F2PQ96R84 312 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 C1QTNF6Q9BXI9 259 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 ZNF629Q9UEG4 869 aaPredicted RBP4.86□□□□□ -1.63
SYNE1-220ENST00000471834 TAC3Q9UHF0 121 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 CD8B2A6NJW9 211 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 L7N2F9 121 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 CRYABP02511 175 aaKnown RBP4.85□□□□□ -1.63
SYNE1-220ENST00000471834 CRHP06850 196 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 ZNF806P0C7X5 589 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 CD8BP10966 210 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 GAB4Q2WGN9 574 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 FCRL6Q6DN72 434 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 ACOT7LQ6ZUV0 252 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 KCTD9Q7L273 389 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 SLC29A4Q7RTT9 530 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 TMEM229BQ8NBD8 167 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 OR10G4Q8NGN3 311 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 ARL5BQ96KC2 179 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 CXorf58Q96LI9 332 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 NDC1Q9BTX1 674 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 BIN3Q9NQY0 253 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 DMRT1Q9Y5R6 373 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 TNFSF12-TNFSF13A0A0A6YY99 330 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 FAM221BA6H8Z2 402 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 ZNF878C9JN71 531 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 M0R036 132 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 TNFSF12O43508 249 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 PIAS2O75928 621 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 LAMP2P13473 410 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 TIMP2P16035 220 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 VEGFCP49767 419 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 MMP16P51512 607 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 DUSP2Q05923 314 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 NR0B2Q15466 257 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 ITPRIPL2Q3MIP1 535 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 PRRT3Q5FWE3 981 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 GATSQ8NAP1 163 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 BBS1Q8NFJ9 593 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 OR52I2Q8NH67 350 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 IGSF21Q96ID5 467 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 NOX3Q9HBY0 568 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 TMEM9BQ9NQ34 198 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 B4GALT7Q9UBV7 327 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 RCE1Q9Y256 329 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 RFXAPO00287 272 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 IGLV3-1P01715 115 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 ISG15P05161 165 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 CD3GP09693 182 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 RNH1P13489 461 aaKnown RBP4.85□□□□□ -1.63
SYNE1-220ENST00000471834 PRKACAP17612 351 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 NANOS3P60323 173 aaKnown RBP4.85□□□□□ -1.63
SYNE1-220ENST00000471834 UBE2NLQ5JXB2 153 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 COL13A1Q5TAT6 717 aaPredicted RBP4.85□□□□□ -1.63
SYNE1-220ENST00000471834 EEF1A1P5Q5VTE0 462 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 FAM180BQ6P0A1 224 aa4.85□□□□□ -1.63
SYNE1-220ENST00000471834 SLC25A42Q86VD7 318 aa4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms