RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 GLYATL3Q5SZD4 288 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 NUDCD2Q8WVJ2 157 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 WDR92Q96MX6 357 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 SLITRK2Q9H156 845 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 NXF5Q9H1B4 397 aaKnown RBP7.86□□□□□ -1.15
USP40-203ENST00000427112 PRTFDC1Q9NRG1 225 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 FOXJ3Q9UPW0 622 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 CAMK2AQ9UQM7 478 aa7.86□□□□□ -1.15
USP40-203ENST00000427112 PCDHGA9Q9Y5G4 932 aaKnown RBP7.86□□□□□ -1.15
USP40-203ENST00000427112 ZNF407Q9C0G0 2248 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 C17orf105B2RV13 164 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 HIST1H2ABP04908 130 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 MAP3K8P41279 467 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 TRA2BP62995 288 aaKnown RBP7.85□□□□□ -1.15
USP40-203ENST00000427112 HTRA4P83105 476 aaPredicted RBP7.85□□□□□ -1.15
USP40-203ENST00000427112 RPL18Q07020 188 aaKnown RBP7.85□□□□□ -1.15
USP40-203ENST00000427112 DEFB133Q30KQ1 61 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 UBE2NLQ5JXB2 153 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 COL13A1Q5TAT6 717 aaPredicted RBP7.85□□□□□ -1.15
USP40-203ENST00000427112 TIGD3Q6B0B8 471 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 CLEC9AQ6UXN8 241 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 HIST3H2AQ7L7L0 130 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 BIVMQ86UB2 503 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 GALNT16Q8N428 558 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 ESX1Q8N693 406 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 NANPQ8TBE9 248 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 HIST1H2ACQ93077 130 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 C19orf43Q9BQ61 176 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 POFUT1Q9H488 388 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 SLC39A1Q9NY26 324 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 DNAJC13O75165 2243 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 EPOPA6NHQ4 379 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 FAM74A7A6NL05 159 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 CYR61O00622 381 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 SUSD5O60279 629 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 ITGA10O75578 1167 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 PNPP00491 289 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 ITGA5P08648 1049 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 C4BPBP20851 252 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 MMP15P51511 669 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 BTG1P62324 171 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 MLC1Q15049 377 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 FAM74A3Q4VXF1 159 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 TMUB2Q71RG4 321 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 MRGPREQ86SM8 312 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 BCORP1Q8N888 145 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 LPAR4Q99677 370 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 Q9N2J8 555 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 TAS2R4Q9NYW5 299 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 TAS2R3Q9NYW6 316 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 PIPOXQ9P0Z9 390 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 SLC17A4Q9Y2C5 497 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 ZNF106Q9H2Y7 1883 aaKnown RBP7.85□□□□□ -1.15
USP40-203ENST00000427112 KIAA1549LQ6ZVL6 1849 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 DCHS1Q96JQ0 3298 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 C7orf66A4D0T2 115 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 ICAM2P13598 275 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 DIO1P49895 249 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 HLXQ14774 488 aaPredicted RBP7.85□□□□□ -1.15
USP40-203ENST00000427112 TOMM20Q15388 145 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 IDO2Q6ZQW0 420 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 ARMC10Q8N2F6 343 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 OR1J2Q8NGS2 313 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 MOAP1Q96BY2 351 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 TOX2Q96NM4 488 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 DUSP15Q9H1R2 295 aaPredicted RBP7.85□□□□□ -1.15
USP40-203ENST00000427112 MED29Q9NX70 200 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 CHRNA9Q9UGM1 479 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 POMT2Q9UKY4 750 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 EMC9Q9Y3B6 208 aa7.85□□□□□ -1.15
USP40-203ENST00000427112 URADA6NGE7 173 aa7.84□□□□□ -1.15
USP40-203ENST00000427112 SEC14L5O43304 696 aa7.84□□□□□ -1.15
USP40-203ENST00000427112 GALR3O60755 368 aaPredicted RBP7.84□□□□□ -1.15
USP40-203ENST00000427112 TRIM3O75382 744 aaPredicted RBP7.84□□□□□ -1.15
USP40-203ENST00000427112 HTR3BO95264 441 aa7.84□□□□□ -1.15
USP40-203ENST00000427112 OR2T7P0C7T2 308 aa7.84□□□□□ -1.15
USP40-203ENST00000427112 SLC2A5P22732 501 aa7.84□□□□□ -1.15
USP40-203ENST00000427112 NTSR1P30989 418 aa7.84□□□□□ -1.15
USP40-203ENST00000427112 EPHA4P54764 986 aa7.84□□□□□ -1.15
USP40-203ENST00000427112 ADAM8P78325 824 aa7.84□□□□□ -1.15
USP40-203ENST00000427112 MFGE8Q08431 387 aaPredicted RBP7.84□□□□□ -1.15
USP40-203ENST00000427112 C2orf76Q3KRA6 126 aa7.84□□□□□ -1.15
USP40-203ENST00000427112 CDNFQ49AH0 187 aa7.84□□□□□ -1.15
USP40-203ENST00000427112 KLHL26Q53HC5 615 aa7.84□□□□□ -1.15
USP40-203ENST00000427112 C3orf33Q6P1S2 294 aa7.84□□□□□ -1.15
USP40-203ENST00000427112 ULK3Q6PHR2 472 aa7.84□□□□□ -1.15
USP40-203ENST00000427112 TMPRSS11FQ6ZWK6 438 aa7.84□□□□□ -1.15
USP40-203ENST00000427112 KRT77Q7Z794 578 aa7.84□□□□□ -1.15
USP40-203ENST00000427112 OR2T27Q8NH04 317 aa7.84□□□□□ -1.15
USP40-203ENST00000427112 RAB7BQ96AH8 199 aa7.84□□□□□ -1.15
USP40-203ENST00000427112 OR10A5Q9H207 317 aa7.84□□□□□ -1.15
USP40-203ENST00000427112 SEC61A2Q9H9S3 476 aa7.84□□□□□ -1.15
USP40-203ENST00000427112 ELL3Q9HB65 397 aaPredicted RBP7.84□□□□□ -1.15
USP40-203ENST00000427112 MED17Q9NVC6 651 aa7.84□□□□□ -1.15
USP40-203ENST00000427112 ENTPD2Q9Y5L3 495 aa7.84□□□□□ -1.15
USP40-203ENST00000427112 DSPP15924 2871 aaKnown RBP7.84□□□□□ -1.15
USP40-203ENST00000427112 FAM221BA6H8Z2 402 aa7.84□□□□□ -1.15
USP40-203ENST00000427112 C5orf51A6NDU8 294 aa7.84□□□□□ -1.15
USP40-203ENST00000427112 RP2O75695 350 aa7.84□□□□□ -1.15
USP40-203ENST00000427112 DCNP07585 359 aaKnown RBP7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 132.8 ms