RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 CRYAAP02489 173 aa14.29□□□□□ -0.12
PTPRF-201ENST00000359947 OR2T7P0C7T2 308 aa14.29□□□□□ -0.12
PTPRF-201ENST00000359947 ITGAMP11215 1152 aa14.29□□□□□ -0.12
PTPRF-201ENST00000359947 APOBEC1P41238 236 aaKnown RBP14.29□□□□□ -0.12
PTPRF-201ENST00000359947 DAPP51397 102 aa14.29□□□□□ -0.12
PTPRF-201ENST00000359947 RAB11AP62491 216 aa14.29□□□□□ -0.12
PTPRF-201ENST00000359947 GLYATL3Q5SZD4 288 aa14.29□□□□□ -0.12
PTPRF-201ENST00000359947 TMPRSS7Q7RTY8 843 aa14.29□□□□□ -0.12
PTPRF-201ENST00000359947 ANKRD60Q9BZ19 345 aa14.29□□□□□ -0.12
PTPRF-201ENST00000359947 TXLNGYQ9BZA5 131 aa14.29□□□□□ -0.12
PTPRF-201ENST00000359947 BRWD1Q9NSI6 2320 aa14.29□□□□□ -0.12
PTPRF-201ENST00000359947 IGLV3-10A0A075B6K4 115 aa14.29□□□□□ -0.12
PTPRF-201ENST00000359947 GALEQ14376 348 aa14.29□□□□□ -0.12
PTPRF-201ENST00000359947 DNAJC5GQ8N7S2 189 aa14.29□□□□□ -0.12
PTPRF-201ENST00000359947 FNDC8Q8TC99 324 aa14.29□□□□□ -0.12
PTPRF-201ENST00000359947 OR51J1Q9H342 316 aa14.29□□□□□ -0.12
PTPRF-201ENST00000359947 TNFRSF19Q9NS68 423 aa14.29□□□□□ -0.12
PTPRF-201ENST00000359947 SEMA4GQ9NTN9 838 aa14.29□□□□□ -0.12
PTPRF-201ENST00000359947 FGF17O60258 216 aa14.29□□□□□ -0.12
PTPRF-201ENST00000359947 CCR5P51681 352 aa14.29□□□□□ -0.12
PTPRF-201ENST00000359947 GK3PQ14409 553 aa14.29□□□□□ -0.12
PTPRF-201ENST00000359947 OR10K1Q8NGX5 313 aa14.29□□□□□ -0.12
PTPRF-201ENST00000359947 ZFP90Q8TF47 636 aa14.29□□□□□ -0.12
PTPRF-201ENST00000359947 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP14.29□□□□□ -0.123e-7■■■■■ 33.1
PTPRF-201ENST00000359947 TUBG2Q9NRH3 451 aa14.29□□□□□ -0.12
PTPRF-201ENST00000359947 DSCR3O14972 297 aa14.29□□□□□ -0.12
PTPRF-201ENST00000359947 CXCL13O43927 109 aa14.29□□□□□ -0.12
PTPRF-201ENST00000359947 MPLP40238 635 aa14.29□□□□□ -0.12
PTPRF-201ENST00000359947 ABHD11Q8NFV4 315 aa14.29□□□□□ -0.12
PTPRF-201ENST00000359947 A0A1W2PR48 441 aa14.28□□□□□ -0.12
PTPRF-201ENST00000359947 IMPA2O14732 288 aa14.28□□□□□ -0.12
PTPRF-201ENST00000359947 LCMT2O60294 686 aaKnown RBP14.28□□□□□ -0.12
PTPRF-201ENST00000359947 ELAVL4P26378 380 aaKnown RBP14.28□□□□□ -0.12
PTPRF-201ENST00000359947 SHC1P29353 583 aa14.28□□□□□ -0.12
PTPRF-201ENST00000359947 FABP6P51161 128 aa14.28□□□□□ -0.12
PTPRF-201ENST00000359947 RAB5BP61020 215 aa14.28□□□□□ -0.12
PTPRF-201ENST00000359947 TEKQ02763 1124 aa14.28□□□□□ -0.12
PTPRF-201ENST00000359947 IDO2Q6ZQW0 420 aa14.28□□□□□ -0.12
PTPRF-201ENST00000359947 RBM45Q8IUH3 476 aaKnown RBP14.28□□□□□ -0.12
PTPRF-201ENST00000359947 L3MBTL4Q8NA19 623 aa14.28□□□□□ -0.12
PTPRF-201ENST00000359947 SEMA6DQ8NFY4 1073 aa14.28□□□□□ -0.12
PTPRF-201ENST00000359947 ARL11Q969Q4 196 aa14.28□□□□□ -0.12
PTPRF-201ENST00000359947 SEC22AQ96IW7 307 aa14.28□□□□□ -0.12
PTPRF-201ENST00000359947 HEYLQ9NQ87 328 aaPredicted RBP14.28□□□□□ -0.12
PTPRF-201ENST00000359947 ZC3H12DA2A288 527 aaKnown RBP14.28□□□□□ -0.12
PTPRF-201ENST00000359947 SIRPB1O00241 398 aa14.28□□□□□ -0.12
PTPRF-201ENST00000359947 OR2B11Q5JQS5 317 aa14.28□□□□□ -0.12
PTPRF-201ENST00000359947 CSF3RQ99062 836 aa14.28□□□□□ -0.12
PTPRF-201ENST00000359947 RPP25Q9BUL9 199 aaKnown RBP14.28□□□□□ -0.12
PTPRF-201ENST00000359947 KIAA1456Q9P272 454 aa14.28□□□□□ -0.12
PTPRF-201ENST00000359947 TRHRP34981 398 aaPredicted RBP14.28□□□□□ -0.12
PTPRF-201ENST00000359947 SLC35G3Q8N808 338 aa14.28□□□□□ -0.12
PTPRF-201ENST00000359947 SUMF2Q8NBJ7 301 aa14.28□□□□□ -0.12
PTPRF-201ENST00000359947 LGALS14Q8TCE9 139 aa14.28□□□□□ -0.12
PTPRF-201ENST00000359947 IP6K3Q96PC2 410 aa14.28□□□□□ -0.12
PTPRF-201ENST00000359947 CGGBP1Q9UFW8 167 aaPredicted RBP14.28□□□□□ -0.12
PTPRF-201ENST00000359947 KIF25Q9UIL4 384 aa14.28□□□□□ -0.12
PTPRF-201ENST00000359947 TARM1B6A8C7 271 aa14.28□□□□□ -0.12
PTPRF-201ENST00000359947 BOLA2-SMG1P6H3BVE0 249 aa14.28□□□□□ -0.12
PTPRF-201ENST00000359947 CTSLP07711 333 aa14.28□□□□□ -0.12
PTPRF-201ENST00000359947 SERPINF1P36955 418 aa14.28□□□□□ -0.12
PTPRF-201ENST00000359947 RPS23P62266 143 aaKnown RBP14.28□□□□□ -0.12
PTPRF-201ENST00000359947 SRSF5Q13243 272 aaKnown RBP14.28□□□□□ -0.12
PTPRF-201ENST00000359947 DUSP7Q16829 419 aa14.28□□□□□ -0.12
PTPRF-201ENST00000359947 A0A1W2PS29 197 aa14.28□□□□□ -0.12
PTPRF-201ENST00000359947 CD14P08571 375 aa14.28□□□□□ -0.12
PTPRF-201ENST00000359947 RAB13P51153 203 aa14.28□□□□□ -0.12
PTPRF-201ENST00000359947 DESI1Q6ICB0 168 aa14.28□□□□□ -0.12
PTPRF-201ENST00000359947 BAHD1Q8TBE0 780 aaPredicted RBP14.28□□□□□ -0.12
PTPRF-201ENST00000359947 TCTEX1D2Q8WW35 142 aa14.28□□□□□ -0.12
PTPRF-201ENST00000359947 FBXO17Q96EF6 278 aa14.28□□□□□ -0.12
PTPRF-201ENST00000359947 RTL8AQ9BWD3 113 aa14.28□□□□□ -0.12
PTPRF-201ENST00000359947 ERVMER34-1Q9H9K5 563 aa14.28□□□□□ -0.12
PTPRF-201ENST00000359947 KCNJ16Q9NPI9 418 aa14.28□□□□□ -0.12
PTPRF-201ENST00000359947 SERTM1A2A2V5 107 aa14.28□□□□□ -0.12
PTPRF-201ENST00000359947 TBXA2RP21731 343 aa14.28□□□□□ -0.12
PTPRF-201ENST00000359947 BCKDHBP21953 392 aa14.28□□□□□ -0.12
PTPRF-201ENST00000359947 ARHGAP11BQ3KRB8 267 aa14.28□□□□□ -0.12
PTPRF-201ENST00000359947 A4GALTQ9NPC4 353 aa14.28□□□□□ -0.12
PTPRF-201ENST00000359947 NAP1L6A6NFF2 107 aa14.27□□□□□ -0.12
PTPRF-201ENST00000359947 DVL1O14640 695 aa14.27□□□□□ -0.12
PTPRF-201ENST00000359947 UBCP0CG48 685 aaKnown RBP14.27□□□□□ -0.12
PTPRF-201ENST00000359947 SSTR2P30874 369 aa14.27□□□□□ -0.12
PTPRF-201ENST00000359947 CAPZBP47756 277 aa14.27□□□□□ -0.12
PTPRF-201ENST00000359947 DVL1P1P54792 670 aaPredicted RBP14.27□□□□□ -0.12
PTPRF-201ENST00000359947 FJX1Q86VR8 437 aa14.27□□□□□ -0.12
PTPRF-201ENST00000359947 ADAMTS14Q8WXS8 1223 aa14.27□□□□□ -0.12
PTPRF-201ENST00000359947 HYLS1Q96M11 299 aa14.27□□□□□ -0.12
PTPRF-201ENST00000359947 TOGARAM1Q9Y4F4 1720 aa14.27□□□□□ -0.12
PTPRF-201ENST00000359947 CT45A6P0DMU7 189 aa14.27□□□□□ -0.12
PTPRF-201ENST00000359947 CT45A5P0DMU8 189 aa14.27□□□□□ -0.12
PTPRF-201ENST00000359947 CT45A7P0DMV0 189 aa14.27□□□□□ -0.12
PTPRF-201ENST00000359947 CT45A8P0DMV1 189 aa14.27□□□□□ -0.12
PTPRF-201ENST00000359947 CT45A9P0DMV2 189 aa14.27□□□□□ -0.12
PTPRF-201ENST00000359947 GRB2P62993 217 aaKnown RBP14.27□□□□□ -0.12
PTPRF-201ENST00000359947 CT45A2Q5DJT8 189 aa14.27□□□□□ -0.12
PTPRF-201ENST00000359947 CT45A1Q5HYN5 189 aa14.27□□□□□ -0.12
PTPRF-201ENST00000359947 SPATA46Q5T0L3 261 aa14.27□□□□□ -0.12
PTPRF-201ENST00000359947 GUSBP11Q6P575 273 aa14.27□□□□□ -0.12
PTPRF-201ENST00000359947 GLIPR1L1Q6UWM5 242 aa14.27□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms