RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 DUSP1P28562 367 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 TACR3P29371 465 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 RAD52P43351 418 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 CLDN20P56880 219 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 ZNF91Q05481 1191 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 PLGLAQ15195 96 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 TP53I3Q53FA7 332 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 FAM74A1Q5RGS3 127 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 FAM180BQ6P0A1 224 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 SLC48A1Q6P1K1 146 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 ZNF836Q6ZNA1 936 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 MED25Q71SY5 747 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 FAM26EQ8N5C1 309 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 OR51Q1Q8NH59 317 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 ABHD4Q8TB40 342 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 MARC2Q969Z3 335 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 PLK3Q9H4B4 646 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 FGF21Q9NSA1 209 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 TCHHQ07283 1943 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 OR6C6A6NF89 314 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 IL5P05113 134 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 GLAP06280 429 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 HOXC4P09017 264 aaPredicted RBP7.2□□□□□ -1.26
VPS13D-211ENST00000543710 NUDT7P0C024 238 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 LIPCP11150 499 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 GLB1P16278 677 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 S100A11P31949 105 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 TRIM23P36406 574 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 ARR3P36575 388 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 SERPINF1P36955 418 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 ZNF791Q3KP31 576 aaPredicted RBP7.2□□□□□ -1.26
VPS13D-211ENST00000543710 NPSR1Q6W5P4 371 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 TMUB2Q71RG4 321 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 VTCN1Q7Z7D3 282 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 NUP37Q8NFH4 326 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 NEIL2Q969S2 332 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 TAAR6Q96RI8 345 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 GPR87Q9BY21 358 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 LINC00597Q9H2U6 94 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 ZNF107Q9UII5 783 aaPredicted RBP7.2□□□□□ -1.26
VPS13D-211ENST00000543710 ATP23Q9Y6H3 246 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 KIR2DS1A0A191URI9 304 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 ANTXRLA6NF34 631 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 ANKRD61A6NGH8 418 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 SGK494L7N484 410 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 HOXC11O43248 304 aaPredicted RBP7.2□□□□□ -1.26
VPS13D-211ENST00000543710 LILRB5O75023 590 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 VAMP5O95183 116 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 DDAH2O95865 285 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 S100A8P05109 93 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 HOXD4P09016 255 aaPredicted RBP7.2□□□□□ -1.26
VPS13D-211ENST00000543710 KIR2DS4P43632 304 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 SUB1P53999 127 aaKnown RBP eCLIP7.2□□□□□ -1.26
VPS13D-211ENST00000543710 PRDX1Q06830 199 aaKnown RBP7.2□□□□□ -1.26
VPS13D-211ENST00000543710 KIR2DS1Q14954 304 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 ELFN2Q5R3F8 820 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 ZNF534Q76KX8 674 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 NLRC3Q7RTR2 1065 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 GRINAQ7Z429 371 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 CMTM4Q8IZR5 234 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 METTL27Q8N6F8 245 aaPredicted RBP7.2□□□□□ -1.26
VPS13D-211ENST00000543710 GPR26Q8NDV2 337 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 PLPP5Q8NEB5 264 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 DUSP22Q9NRW4 184 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 POMT1Q9Y6A1 747 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 RGPD3A6NKT7 1758 aaPredicted RBP7.2□□□□□ -1.26
VPS13D-211ENST00000543710 CT45A6P0DMU7 189 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 CT45A5P0DMU8 189 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 CT45A7P0DMV0 189 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 CT45A8P0DMV1 189 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 CT45A9P0DMV2 189 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 CD81P60033 236 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 DUSP8Q13202 625 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 TATDN3Q17R31 274 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 DEFB134Q4QY38 66 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 CT45A2Q5DJT8 189 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 CT45A1Q5HYN5 189 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 SFRP4Q6FHJ7 346 aaPredicted RBP7.2□□□□□ -1.26
VPS13D-211ENST00000543710 HEPHL1Q6MZM0 1159 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 CCDC71Q8IV32 467 aaPredicted RBP7.2□□□□□ -1.26
VPS13D-211ENST00000543710 LYSMD2Q8IV50 215 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 LGI3Q8N145 548 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 CLDN19Q8N6F1 224 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 BBS1Q8NFJ9 593 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 CT45A3Q8NHU0 189 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 C3orf49Q96BT1 292 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 LCORQ96JN0 433 aaPredicted RBP7.2□□□□□ -1.26
VPS13D-211ENST00000543710 C3orf30Q96M34 536 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 RHNO1Q9BSD3 238 aa7.2□□□□□ -1.26
VPS13D-211ENST00000543710 TCRBV5S2A0A599 114 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 ANKUB1A6NFN9 424 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 ZNF728P0DKX0 622 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 GCSHP23434 173 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 LAP3P28838 519 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 HYAL2Q12891 473 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 TNK1Q13470 666 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 SPNS3Q6ZMD2 512 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 SLCO4C1Q6ZQN7 724 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 DPY19L4Q7Z388 723 aa7.19□□□□□ -1.26
VPS13D-211ENST00000543710 ZBTB46Q86UZ6 589 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms