RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 ASF1BQ9NVP2 202 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 TMEM45AQ9NWC5 275 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 RPS6KB2Q9UBS0 482 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 PCNX1Q96RV3 2341 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 SHISA8B8ZZ34 492 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 TM4SF5O14894 197 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 ZNF354AO60765 605 aaPredicted RBP7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 HPXP02790 462 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 TPOP07202 933 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 FREM3P0C091 2139 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 S1PR1P21453 382 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 HLA-DMAP28067 261 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 ABCD3P28288 659 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 STAT5AP42229 794 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 FRKP42685 505 aaPredicted RBP7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 GPR143P51810 404 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 KRBOX4Q5JUW0 171 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 GPR139Q6DWJ6 353 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 LINC00299Q6ZSB3 139 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 RPS19BP1Q86WX3 136 aaKnown RBP7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 GPALPP1Q8IXQ4 340 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 OR52B4Q8NGK2 314 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 C7orf34Q96L11 122 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 DOHHQ9BU89 302 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 DDA1Q9BW61 102 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 OR51V1Q9H2C8 321 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 NMNAT1Q9HAN9 279 aaPredicted RBP7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 ELF5Q9UKW6 265 aaPredicted RBP7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 RASD1Q9Y272 281 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 POFUT2Q9Y2G5 429 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 A0A075B6Q4 140 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 TBX19O60806 448 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 UTS2O95399 124 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 TCRBP04435 133 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 ANXA8P13928 327 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 CRISP1P54107 249 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 CLDN12P56749 244 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 BLOC1S1P78537 153 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 TNK1Q13470 666 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 PUM1Q14671 1186 aaKnown RBP eCLIP7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 ODF4Q2M2E3 257 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 COL28A1Q2UY09 1125 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 FRRS1Q6ZNA5 592 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 MRGPREQ86SM8 312 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 CALHM3Q86XJ0 350 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 SIAH3Q8IW03 269 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 PLPP5Q8NEB5 264 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 OR10G3Q8NGC4 313 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 OR51G2Q8NGK0 314 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 OR6T1Q8NGN1 323 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 OR10K1Q8NGX5 313 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 OR8S1Q8NH09 359 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 KLHL15Q96M94 604 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 VSTM2LQ96N03 204 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 MCHR1Q99705 422 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 TSPAN10Q9H1Z9 355 aaPredicted RBP7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 MIOXQ9UGB7 285 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 NPFFR2Q9Y5X5 522 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 CACNG2Q9Y698 323 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 HEATR5AQ86XA9 2040 aa7.88□□□□□ -1.15
LIMCH1-209ENST00000509277 PTP4A3O75365 173 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 GCM2O75603 506 aaPredicted RBP7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 TRAPPC6AO75865 159 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 ACHEP22303 614 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 ETV6P41212 452 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 SELENOWP63302 87 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 FABP5Q01469 135 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 POU4F2Q12837 409 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 PPP1R32Q7Z5V6 425 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 LILRB2Q8N423 598 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 ZNF615Q8N8J6 731 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 OR10H4Q8NGA5 316 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 KCNE4Q8WWG9 221 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 ZNF566Q969W8 418 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 SLC25A46Q96AG3 418 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 RSRP1Q9BUV0 290 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 CALML5Q9NZT1 146 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 LIPT1Q9Y234 373 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 TLN1Q9Y490 2541 aaKnown RBP7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 IGKV3D-11A0A0A0MRZ8 115 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 TRBV4-1A0A0J9YWV2 114 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 SH3D21A4FU49 640 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 PROB1E7EW31 1015 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 ZIC2O95409 532 aaPredicted RBP7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 ZNF35P13682 527 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 ANXA7P20073 488 aaKnown RBP7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 ID4P47928 161 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 GZMMP51124 257 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 FUT7Q11130 342 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 MLC1Q15049 377 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 SEC23BQ15437 767 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 PDSS1Q5T2R2 415 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 FHL5Q5TD97 284 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 ABHD17BQ5VST6 288 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 COMTD1Q86VU5 262 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 ZNF619Q8N2I2 560 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 APCDD1LQ8NCL9 501 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 MFRPQ9BY79 579 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 NDUFAF4Q9P032 175 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 RCE1Q9Y256 329 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms