RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 EIF5AL1Q6IS14 154 aaKnown RBP8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 SLC48A1Q6P1K1 146 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 Q71RC1 249 aaPredicted RBP8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 CXorf67Q86X51 503 aaPredicted RBP8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 CMIPQ8IY22 773 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 KDM8Q8N371 416 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 CYB561A3Q8NBI2 242 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 CLDN23Q96B33 292 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 ZMYND19Q96E35 227 aaPredicted RBP8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 C7orf26Q96N11 449 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 ALKBH3Q96Q83 286 aaPredicted RBP8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 ST6GALNAC5Q9BVH7 336 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 SLC52A3Q9NQ40 469 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 A0A0U1RQK1 487 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 LOC101059948A0A1B0GTJ6 334 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 ZNF320A2RRD8 509 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 BET1O15155 118 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 PFN3P60673 137 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 PLAURQ03405 335 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 HNF4GQ14541 408 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 CEACAM16Q2WEN9 425 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 B3GNT8Q7Z7M8 397 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 NLRP8Q86W28 1048 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 MUC20Q8N307 709 aaPredicted RBP8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 OR13G1Q8NGZ3 307 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 UTP4Q969X6 686 aaKnown RBP8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 UPRTQ96BW1 309 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 SIAEQ9HAT2 523 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 CDC42EP3Q9UKI2 254 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 HDGFL3Q9Y3E1 203 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 AHRRA9YTQ3 701 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 H7C1C5 153 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 SIRPB1O00241 398 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 SEMA7AO75326 666 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 PSMA6P60900 246 aaKnown RBP8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 LCN6P62502 163 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 HSF1Q00613 529 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 GRK1Q15835 563 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 AADACL3Q5VUY0 350 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 SPARTQ8N0X7 666 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 SLC30A7Q8NEW0 376 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 KTI12Q96EK9 354 aaPredicted RBP8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 GRAMD2BQ96HH9 432 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 PRKNO60260 465 aaPredicted RBP8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 CLDN10P78369 228 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 TUBA3CQ13748 450 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 MSMO1Q15800 293 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 KCNMB1Q16558 191 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 UGT8Q16880 541 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 ZBED5Q49AG3 693 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 TUBA3EQ6PEY2 450 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 SNX29P2Q8IUI4 249 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 C17orf78Q8N4C9 275 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 SDSLQ96GA7 329 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 ATG4BQ9Y4P1 393 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 MEIKINA0A087WXM9 373 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 MT-ATP6P00846 226 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 TBPP20226 339 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 DRD5P21918 477 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 OR3A4PP47883 348 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 CX3CR1P49238 355 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 RRAS2P62070 204 aaPredicted RBP8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 MEDAGQ5VYS4 303 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 VRK3Q8IV63 474 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 CHPT1Q8WUD6 406 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 DNASE2BQ8WZ79 361 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 MOB3AQ96BX8 217 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 ZNF778Q96MU6 729 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 GALNT9Q9HCQ5 603 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 RAB18Q9NP72 206 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 COMMD3Q9UBI1 195 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 AASSQ9UDR5 926 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 PCTPQ9UKL6 214 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 SHANK3Q9BYB0 1731 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 KANTRA0A1W2PQU2 76 aa8.37□□□□□ -1.07
LIMCH1-202ENST00000381753 MEGF11A6BM72 1044 aa8.37□□□□□ -1.07
LIMCH1-202ENST00000381753 ZSCAN5BA6NJL1 495 aa8.37□□□□□ -1.07
LIMCH1-202ENST00000381753 B8ZZF3 427 aa8.37□□□□□ -1.07
LIMCH1-202ENST00000381753 ZG16O60844 167 aa8.37□□□□□ -1.07
LIMCH1-202ENST00000381753 ZIC2O95409 532 aaPredicted RBP8.37□□□□□ -1.07
LIMCH1-202ENST00000381753 FGF3P11487 239 aaPredicted RBP8.37□□□□□ -1.07
LIMCH1-202ENST00000381753 PRDX6P30041 224 aa8.37□□□□□ -1.07
LIMCH1-202ENST00000381753 AP2S1P53680 142 aaPredicted RBP8.37□□□□□ -1.07
LIMCH1-202ENST00000381753 GPR50Q13585 617 aa8.37□□□□□ -1.07
LIMCH1-202ENST00000381753 TCTN1Q2MV58 587 aa8.37□□□□□ -1.07
LIMCH1-202ENST00000381753 AVPI1Q5T686 147 aa8.37□□□□□ -1.07
LIMCH1-202ENST00000381753 OGFRL1Q5TC84 451 aaPredicted RBP8.37□□□□□ -1.07
LIMCH1-202ENST00000381753 OR52W1Q6IF63 320 aa8.37□□□□□ -1.07
LIMCH1-202ENST00000381753 BATF2Q8N1L9 274 aa8.37□□□□□ -1.07
LIMCH1-202ENST00000381753 PGBD5Q8N414 524 aa8.37□□□□□ -1.07
LIMCH1-202ENST00000381753 FYTTD1Q96QD9 318 aaKnown RBP8.37□□□□□ -1.07
LIMCH1-202ENST00000381753 C20orf24Q9BUV8 137 aa8.37□□□□□ -1.07
LIMCH1-202ENST00000381753 AMBNQ9NP70 447 aa8.37□□□□□ -1.07
LIMCH1-202ENST00000381753 TUBA8Q9NY65 449 aaPredicted RBP8.37□□□□□ -1.07
LIMCH1-202ENST00000381753 PIGLQ9Y2B2 252 aa8.37□□□□□ -1.07
LIMCH1-202ENST00000381753 FGF17O60258 216 aa8.37□□□□□ -1.07
LIMCH1-202ENST00000381753 AKR1D1P51857 326 aa8.37□□□□□ -1.07
LIMCH1-202ENST00000381753 MCCD1P59942 119 aaPredicted RBP8.37□□□□□ -1.07
LIMCH1-202ENST00000381753 TMEM267Q0VDI3 215 aaPredicted RBP8.37□□□□□ -1.07
LIMCH1-202ENST00000381753 FOXF1Q12946 379 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms