RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 EXOSC1Q9Y3B2 195 aaKnown RBP16.56■□□□□ 0.24
CLN3-206ENST00000360019 IGKV1D-43A0A0B4J1Z2 117 aa16.56■□□□□ 0.24
CLN3-206ENST00000360019 SMIM31A0A1B0GVY4 71 aa16.56■□□□□ 0.24
CLN3-206ENST00000360019 C12orf71A8MTZ7 269 aa16.56■□□□□ 0.24
CLN3-206ENST00000360019 NPIPA2E9PIF3 369 aa16.56■□□□□ 0.24
CLN3-206ENST00000360019 NPIPA3F8WFD2 350 aa16.56■□□□□ 0.24
CLN3-206ENST00000360019 SELENOFO60613 162 aa16.56■□□□□ 0.24
CLN3-206ENST00000360019 GPANK1O95872 356 aa16.56■□□□□ 0.24
CLN3-206ENST00000360019 PSMB9P28065 219 aa16.56■□□□□ 0.24
CLN3-206ENST00000360019 NAA10P41227 235 aaPredicted RBP16.56■□□□□ 0.24
CLN3-206ENST00000360019 CLDN17P56750 224 aa16.56■□□□□ 0.24
CLN3-206ENST00000360019 POU4F2Q12837 409 aa16.56■□□□□ 0.24
CLN3-206ENST00000360019 CAMK2DQ13557 499 aa16.56■□□□□ 0.24
CLN3-206ENST00000360019 PLXDC2Q6UX71 529 aa16.56■□□□□ 0.24
CLN3-206ENST00000360019 LHFPL3Q86UP9 236 aa16.56■□□□□ 0.24
CLN3-206ENST00000360019 POMGNT2Q8NAT1 580 aa16.56■□□□□ 0.24
CLN3-206ENST00000360019 ZNF511Q8NB15 262 aa16.56■□□□□ 0.24
CLN3-206ENST00000360019 WDYHV1Q96HA8 205 aa16.56■□□□□ 0.24
CLN3-206ENST00000360019 CRELD1Q96HD1 420 aa16.56■□□□□ 0.24
CLN3-206ENST00000360019 CNN2Q99439 309 aaKnown RBP16.56■□□□□ 0.24
CLN3-206ENST00000360019 ERVK13-1Q9NX77 482 aa16.56■□□□□ 0.24
CLN3-206ENST00000360019 MYL12BO14950 172 aa16.55■□□□□ 0.24
CLN3-206ENST00000360019 CYTIPO60759 359 aa16.55■□□□□ 0.24
CLN3-206ENST00000360019 CPN1P15169 458 aa16.55■□□□□ 0.24
CLN3-206ENST00000360019 CD79BP40259 229 aa16.55■□□□□ 0.24
CLN3-206ENST00000360019 RPS3AP61247 264 aaKnown RBP16.55■□□□□ 0.24
CLN3-206ENST00000360019 MED22Q15528 200 aa16.55■□□□□ 0.24
CLN3-206ENST00000360019 PLEKHN1Q494U1 663 aaPredicted RBP16.55■□□□□ 0.24
CLN3-206ENST00000360019 OR2G6Q5TZ20 316 aa16.55■□□□□ 0.24
CLN3-206ENST00000360019 FCRLAQ7L513 359 aa16.55■□□□□ 0.24
CLN3-206ENST00000360019 ACBD7Q8N6N7 88 aa16.55■□□□□ 0.24
CLN3-206ENST00000360019 NOXO1Q8NFA2 376 aa16.55■□□□□ 0.24
CLN3-206ENST00000360019 OR10H4Q8NGA5 316 aa16.55■□□□□ 0.24
CLN3-206ENST00000360019 ABHD3Q8WU67 409 aa16.55■□□□□ 0.24
CLN3-206ENST00000360019 NMD3Q96D46 503 aaKnown RBP16.55■□□□□ 0.24
CLN3-206ENST00000360019 MND1Q9BWT6 205 aa16.55■□□□□ 0.24
CLN3-206ENST00000360019 RACGAP1Q9H0H5 632 aa16.55■□□□□ 0.24
CLN3-206ENST00000360019 CEPT1Q9Y6K0 416 aa16.55■□□□□ 0.24
CLN3-206ENST00000360019 A0A1B0GVC2 190 aa16.54■□□□□ 0.24
CLN3-206ENST00000360019 TMEM129A0AVI4 362 aa16.54■□□□□ 0.24
CLN3-206ENST00000360019 MED19A0JLT2 244 aaPredicted RBP16.54■□□□□ 0.24
CLN3-206ENST00000360019 H3BSA7 217 aa16.54■□□□□ 0.24
CLN3-206ENST00000360019 AHCYL1O43865 530 aa16.54■□□□□ 0.24
CLN3-206ENST00000360019 IGHG1P01857 330 aa16.54■□□□□ 0.24
CLN3-206ENST00000360019 CRABP1P29762 137 aa16.54■□□□□ 0.24
CLN3-206ENST00000360019 HCCSP53701 268 aa16.54■□□□□ 0.24
CLN3-206ENST00000360019 CARD17Q5XLA6 110 aa16.54■□□□□ 0.24
CLN3-206ENST00000360019 RPUSD3Q6P087 351 aaKnown RBP16.54■□□□□ 0.24
CLN3-206ENST00000360019 ZNF367Q7RTV3 350 aa16.54■□□□□ 0.24
CLN3-206ENST00000360019 HDDC2Q7Z4H3 204 aa16.54■□□□□ 0.24
CLN3-206ENST00000360019 TIGD4Q8IY51 512 aa16.54■□□□□ 0.24
CLN3-206ENST00000360019 ZCCHC14Q8WYQ9 949 aaKnown RBP16.54■□□□□ 0.24
CLN3-206ENST00000360019 ADAD1Q96M93 576 aaKnown RBP16.54■□□□□ 0.24
CLN3-206ENST00000360019 FOXN4Q96NZ1 517 aa16.54■□□□□ 0.24
CLN3-206ENST00000360019 PLSCR2Q9NRY7 297 aa16.54■□□□□ 0.24
CLN3-206ENST00000360019 CHCHD3Q9NX63 227 aaKnown RBP16.54■□□□□ 0.24
CLN3-206ENST00000360019 LUZP4Q9P127 313 aa16.54■□□□□ 0.24
CLN3-206ENST00000360019 ING1Q9UK53 422 aaPredicted RBP16.54■□□□□ 0.24
CLN3-206ENST00000360019 MAP1BP46821 2468 aaKnown RBP16.54■□□□□ 0.24
CLN3-206ENST00000360019 TVP23AA6NH52 213 aa16.54■□□□□ 0.24
CLN3-206ENST00000360019 CLRN1P58418 232 aa16.54■□□□□ 0.24
CLN3-206ENST00000360019 TIGD6Q17RP2 521 aa16.54■□□□□ 0.24
CLN3-206ENST00000360019 RFLNBQ8N5W9 214 aa16.54■□□□□ 0.24
CLN3-206ENST00000360019 ZNF775Q96BV0 537 aaPredicted RBP16.54■□□□□ 0.24
CLN3-206ENST00000360019 FAM192AQ9GZU8 254 aa16.54■□□□□ 0.24
CLN3-206ENST00000360019 PAQR5Q9NXK6 330 aaPredicted RBP16.54■□□□□ 0.24
CLN3-206ENST00000360019 FLVCR1Q9Y5Y0 555 aa16.54■□□□□ 0.24
CLN3-206ENST00000360019 A0A1W2PQL4 384 aaPredicted RBP16.53■□□□□ 0.24
CLN3-206ENST00000360019 ZNF726A6NNF4 738 aa16.53■□□□□ 0.24
CLN3-206ENST00000360019 ZNF432O94892 652 aa16.53■□□□□ 0.24
CLN3-206ENST00000360019 TTKP33981 857 aa16.53■□□□□ 0.24
CLN3-206ENST00000360019 NTF4P34130 210 aa16.53■□□□□ 0.24
CLN3-206ENST00000360019 ZNF85Q03923 595 aa16.53■□□□□ 0.24
CLN3-206ENST00000360019 SPHARQ15513 63 aa16.53■□□□□ 0.24
CLN3-206ENST00000360019 HIST3H3Q16695 136 aa16.53■□□□□ 0.24
CLN3-206ENST00000360019 SSX6Q7RTT6 188 aa16.53■□□□□ 0.24
CLN3-206ENST00000360019 ERI1Q8IV48 349 aaKnown RBP16.53■□□□□ 0.24
CLN3-206ENST00000360019 SLC35F2Q8IXU6 374 aa16.53■□□□□ 0.24
CLN3-206ENST00000360019 ZNF485Q8NCK3 441 aa16.53■□□□□ 0.24
CLN3-206ENST00000360019 FNDC9Q8TBE3 224 aa16.53■□□□□ 0.24
CLN3-206ENST00000360019 RNF128Q8TEB7 428 aa16.53■□□□□ 0.24
CLN3-206ENST00000360019 COG8Q96MW5 612 aa16.53■□□□□ 0.24
CLN3-206ENST00000360019 OR2M2Q96R28 347 aa16.53■□□□□ 0.24
CLN3-206ENST00000360019 ZNF71Q9NQZ8 489 aaPredicted RBP16.53■□□□□ 0.24
CLN3-206ENST00000360019 INPP5EQ9NRR6 644 aa16.53■□□□□ 0.24
CLN3-206ENST00000360019 NDUFA13Q9P0J0 144 aa16.53■□□□□ 0.24
CLN3-206ENST00000360019 COA3Q9Y2R0 106 aaPredicted RBP16.53■□□□□ 0.24
CLN3-206ENST00000360019 TLN1Q9Y490 2541 aaKnown RBP16.52■□□□□ 0.24
CLN3-206ENST00000360019 AQP7O14520 342 aa16.52■□□□□ 0.24
CLN3-206ENST00000360019 ZNHIT1O43257 154 aa16.52■□□□□ 0.24
CLN3-206ENST00000360019 FAM87AP0C7U9 286 aa16.52■□□□□ 0.24
CLN3-206ENST00000360019 SELENOPP49908 381 aa16.52■□□□□ 0.24
CLN3-206ENST00000360019 ACTC1P68032 377 aa16.52■□□□□ 0.24
CLN3-206ENST00000360019 ACTA1P68133 377 aa16.52■□□□□ 0.24
CLN3-206ENST00000360019 RASGEF1BQ0VAM2 473 aa16.52■□□□□ 0.24
CLN3-206ENST00000360019 LINC00303Q3SY05 128 aa16.52■□□□□ 0.24
CLN3-206ENST00000360019 THEM4Q5T1C6 240 aa16.52■□□□□ 0.24
CLN3-206ENST00000360019 OTPQ5XKR4 325 aa16.52■□□□□ 0.24
CLN3-206ENST00000360019 CLVS1Q8IUQ0 354 aaPredicted RBP16.52■□□□□ 0.24
CLN3-206ENST00000360019 TMEM123Q8N131 208 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms