RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 CD14P08571 375 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 CRISP2P16562 243 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 GABRB1P18505 474 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 CD80P33681 288 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 BMPR1AP36894 532 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 ARRB1P49407 418 aaPredicted RBP4.5□□□□□ -1.69
CSMD3-201ENST00000297405 SULT1A1P50225 295 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 UFM1P61960 85 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 POU2AF1Q16633 256 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 NSUN5P2Q63ZY6 315 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 ZNF66Q6ZN08 573 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 DPY19L2P2Q6ZN68 376 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 OVCH2Q7RTZ1 564 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 BPIFA4PQ86YQ2 179 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 IRF2BP1Q8IU81 584 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 GPC2Q8N158 579 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 PIH1D1Q9NWS0 290 aaKnown RBP4.5□□□□□ -1.69
CSMD3-201ENST00000297405 EHFQ9NZC4 300 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 OR2A25A4D2G3 310 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 PEX10O60683 326 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 NRASP01111 189 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 HRASP01112 189 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 KRASP01116 189 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 NMBRP28336 390 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 BAXQ07812 192 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 GAB1Q13480 694 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 LINC01559Q495D7 138 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 ZNF836Q6ZNA1 936 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 GKN2Q86XP6 184 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 OR51S1Q8NGJ8 323 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 SMIM4Q8WVI0 70 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 PGAM5Q96HS1 289 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 SAMD8Q96LT4 415 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 FAM173AQ9BQD7 235 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 C11orf54Q9H0W9 315 aaPredicted RBP4.5□□□□□ -1.69
CSMD3-201ENST00000297405 NECAP2Q9NVZ3 263 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 TAS2R14Q9NYV8 317 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 LPAR3Q9UBY5 353 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 USP3Q9Y6I4 520 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 CCDC187A0A096LP49 1063 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 DCTN6O00399 190 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 ITGB2P05107 769 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 ZNF25P17030 456 aaPredicted RBP4.5□□□□□ -1.69
CSMD3-201ENST00000297405 IL3RAP26951 378 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 SDHAP31040 664 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 EVX1P49640 407 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 TAS2R38P59533 333 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 GPR17Q13304 367 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 TMEM198Q66K66 360 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 SOCS4Q8WXH5 440 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 HGDQ93099 445 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 MCHR2Q969V1 340 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 GAL3ST4Q96RP7 486 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 SLC9B1P1A6NJY1 282 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 PDE6DO43924 150 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 RNGTTO60942 597 aaKnown RBP4.5□□□□□ -1.69
CSMD3-201ENST00000297405 NFATC1O95644 943 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 LTKP29376 864 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 PTGFRP43088 359 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 RABGGTBP53611 331 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 NAAAQ02083 359 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 TPBGQ13641 420 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 LRRTM4Q86VH4 590 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 GRHL3Q8TE85 626 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 DDIT4LQ96D03 193 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 SUV39H2Q9H5I1 410 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 TBX21Q9UL17 535 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 DIMT1Q9UNQ2 313 aaKnown RBP4.5□□□□□ -1.69
CSMD3-201ENST00000297405 STRCP1A6NGW2 1772 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 SIRPB1O00241 398 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 PLSCR1O15162 318 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 SCGB1A1P11684 91 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 F2RP25116 425 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 EPHA2P29317 976 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 SRP14P37108 136 aaKnown RBP4.5□□□□□ -1.69
CSMD3-201ENST00000297405 AMMECR1LQ6DCA0 310 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 OGFOD3Q6PK18 319 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 OR9A1PQ8NGU1 263 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 LHX3Q9UBR4 397 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 MOB4Q9Y3A3 225 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 CTSHP09668 335 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 ZNF26P17031 533 aaPredicted RBP4.49□□□□□ -1.69
CSMD3-201ENST00000297405 RPS15AP62244 130 aaKnown RBP4.49□□□□□ -1.69
CSMD3-201ENST00000297405 UBE2G1P62253 170 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 SNRPEP62304 92 aaKnown RBP4.49□□□□□ -1.69
CSMD3-201ENST00000297405 ZNF90Q03938 601 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 PGGHGQ32M88 737 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 MIDNQ504T8 468 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 TMEM128Q5BJH2 165 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 FAM209BQ5JX69 171 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 IFNLR1Q8IU57 520 aaPredicted RBP4.49□□□□□ -1.69
CSMD3-201ENST00000297405 OR5AS1Q8N127 324 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 RAB7BQ96AH8 199 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 SGCZQ96LD1 299 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 EBPLQ9BY08 206 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 LOC285556D6RIA3 1793 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 MAP1LC3B2A6NCE7 125 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 H0YIV9 168 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 LEFTY1O75610 366 aa4.49□□□□□ -1.69
CSMD3-201ENST00000297405 PLGP00747 810 aaPredicted RBP4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 139 ms