RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 DOK1Q99704 481 aa16.51■□□□□ 0.23
CCDC28A-203ENST00000617445 ZNF446Q9NWS9 450 aa16.51■□□□□ 0.23
CCDC28A-203ENST00000617445 TMEM160Q9NX00 188 aa16.51■□□□□ 0.23
CCDC28A-203ENST00000617445 GLTPQ9NZD2 209 aa16.51■□□□□ 0.23
CCDC28A-203ENST00000617445 ADAM21Q9UKJ8 722 aa16.51■□□□□ 0.23
CCDC28A-203ENST00000617445 AP3M1Q9Y2T2 418 aa16.51■□□□□ 0.23
CCDC28A-203ENST00000617445 SH3GLB1Q9Y371 365 aa16.51■□□□□ 0.23
CCDC28A-203ENST00000617445 CMAHPQ9Y471 501 aa16.51■□□□□ 0.23
CCDC28A-203ENST00000617445 hCG_2039718K7EN88 272 aa16.5■□□□□ 0.23
CCDC28A-203ENST00000617445 SEC14L2O76054 403 aa16.5■□□□□ 0.23
CCDC28A-203ENST00000617445 OR5F1O95221 314 aa16.5■□□□□ 0.23
CCDC28A-203ENST00000617445 MT-ND1P03886 318 aa16.5■□□□□ 0.23
CCDC28A-203ENST00000617445 THRBP10828 461 aa16.5■□□□□ 0.23
CCDC28A-203ENST00000617445 B4GALT1P15291 398 aa16.5■□□□□ 0.23
CCDC28A-203ENST00000617445 ZNF14P17017 642 aaPredicted RBP16.5■□□□□ 0.23
CCDC28A-203ENST00000617445 LSM11P83369 360 aaKnown RBP eCLIP16.5■□□□□ 0.23
CCDC28A-203ENST00000617445 REP15Q6BDI9 236 aa16.5■□□□□ 0.23
CCDC28A-203ENST00000617445 HDDC2Q7Z4H3 204 aa16.5■□□□□ 0.23
CCDC28A-203ENST00000617445 DPPA2Q7Z7J5 298 aa16.5■□□□□ 0.23
CCDC28A-203ENST00000617445 MYPOPQ86VE0 399 aaPredicted RBP16.5■□□□□ 0.23
CCDC28A-203ENST00000617445 PRSS27Q9BQR3 290 aa16.5■□□□□ 0.23
CCDC28A-203ENST00000617445 NOX3Q9HBY0 568 aa16.5■□□□□ 0.23
CCDC28A-203ENST00000617445 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP16.5■□□□□ 0.23
CCDC28A-203ENST00000617445 HTR3EA5X5Y0 456 aa16.49■□□□□ 0.23
CCDC28A-203ENST00000617445 CENPBD1B2RD01 187 aa16.49■□□□□ 0.23
CCDC28A-203ENST00000617445 KPNA4O00629 521 aaPredicted RBP16.49■□□□□ 0.23
CCDC28A-203ENST00000617445 MGRN1O60291 552 aa16.49■□□□□ 0.23
CCDC28A-203ENST00000617445 LY6HO94772 140 aa16.49■□□□□ 0.23
CCDC28A-203ENST00000617445 RAB36O95755 333 aa16.49■□□□□ 0.23
CCDC28A-203ENST00000617445 BCL10O95999 233 aa16.49■□□□□ 0.23
CCDC28A-203ENST00000617445 OR8G3PP0DMU2 310 aa16.49■□□□□ 0.23
CCDC28A-203ENST00000617445 UMPSP11172 480 aa16.49■□□□□ 0.23
CCDC28A-203ENST00000617445 ZNF35P13682 527 aa16.49■□□□□ 0.23
CCDC28A-203ENST00000617445 NR4A2P43354 598 aa16.49■□□□□ 0.23
CCDC28A-203ENST00000617445 GZMKP49863 264 aa16.49■□□□□ 0.23
CCDC28A-203ENST00000617445 TAS2R41P59536 307 aa16.49■□□□□ 0.23
CCDC28A-203ENST00000617445 RAB1AP62820 205 aa16.49■□□□□ 0.23
CCDC28A-203ENST00000617445 SNTB2Q13425 540 aaKnown RBP16.49■□□□□ 0.23
CCDC28A-203ENST00000617445 CHRFAM7AQ494W8 412 aa16.49■□□□□ 0.23
CCDC28A-203ENST00000617445 SPATA21Q7Z572 469 aa16.49■□□□□ 0.23
CCDC28A-203ENST00000617445 NANOGNBQ7Z5D8 188 aa16.49■□□□□ 0.23
CCDC28A-203ENST00000617445 TSPYL5Q86VY4 417 aaPredicted RBP16.49■□□□□ 0.23
CCDC28A-203ENST00000617445 LRRC17Q8N6Y2 441 aa16.49■□□□□ 0.23
CCDC28A-203ENST00000617445 C10orf82Q8WW14 230 aa16.49■□□□□ 0.23
CCDC28A-203ENST00000617445 ZNF75AQ96N20 296 aa16.49■□□□□ 0.23
CCDC28A-203ENST00000617445 CCDC134Q9H6E4 229 aa16.49■□□□□ 0.23
CCDC28A-203ENST00000617445 MEPEQ9NQ76 525 aaPredicted RBP16.49■□□□□ 0.23
CCDC28A-203ENST00000617445 STX18Q9P2W9 335 aaKnown RBP16.49■□□□□ 0.23
CCDC28A-203ENST00000617445 CDC42EP3Q9UKI2 254 aa16.49■□□□□ 0.23
CCDC28A-203ENST00000617445 MALRD1Q5VYJ5 2156 aa16.48■□□□□ 0.23
CCDC28A-203ENST00000617445 LOC100653049A0A140TA62 436 aa16.48■□□□□ 0.23
CCDC28A-203ENST00000617445 A0A1W2PRG6 482 aa16.48■□□□□ 0.23
CCDC28A-203ENST00000617445 KRT34O76011 436 aa16.48■□□□□ 0.23
CCDC28A-203ENST00000617445 FARS2O95363 451 aaKnown RBP16.48■□□□□ 0.23
CCDC28A-203ENST00000617445 IGHG1P01857 330 aa16.48■□□□□ 0.23
CCDC28A-203ENST00000617445 LSP1P33241 339 aa16.48■□□□□ 0.23
CCDC28A-203ENST00000617445 GLRXP35754 106 aa16.48■□□□□ 0.23
CCDC28A-203ENST00000617445 RPS23P62266 143 aaKnown RBP16.48■□□□□ 0.23
CCDC28A-203ENST00000617445 PIGFQ07326 219 aa16.48■□□□□ 0.23
CCDC28A-203ENST00000617445 NRN1LQ496H8 165 aa16.48■□□□□ 0.23
CCDC28A-203ENST00000617445 PODNL1Q6PEZ8 512 aa16.48■□□□□ 0.23
CCDC28A-203ENST00000617445 WDFY1Q8IWB7 410 aa16.48■□□□□ 0.23
CCDC28A-203ENST00000617445 SLC22A24Q8N4F4 322 aa16.48■□□□□ 0.23
CCDC28A-203ENST00000617445 LIPHQ8WWY8 451 aa16.48■□□□□ 0.23
CCDC28A-203ENST00000617445 ZNF224Q9NZL3 707 aa16.48■□□□□ 0.23
CCDC28A-203ENST00000617445 RIMS3Q9UJD0 308 aa16.48■□□□□ 0.23
CCDC28A-203ENST00000617445 CAPN7Q9Y6W3 813 aa16.48■□□□□ 0.23
CCDC28A-203ENST00000617445 TMEM129A0AVI4 362 aa16.47■□□□□ 0.23
CCDC28A-203ENST00000617445 FAM220BPB1ANY3 271 aa16.47■□□□□ 0.23
CCDC28A-203ENST00000617445 BLOC1S5-TXNDC5H3BN57 136 aa16.47■□□□□ 0.23
CCDC28A-203ENST00000617445 DHHO43323 396 aa16.47■□□□□ 0.23
CCDC28A-203ENST00000617445 PGA4P0DJD7 388 aa16.47■□□□□ 0.23
CCDC28A-203ENST00000617445 PGA3P0DJD8 388 aa16.47■□□□□ 0.23
CCDC28A-203ENST00000617445 FUT1P19526 365 aa16.47■□□□□ 0.23
CCDC28A-203ENST00000617445 IFNA8P32881 189 aa16.47■□□□□ 0.23
CCDC28A-203ENST00000617445 KDELR2P33947 212 aa16.47■□□□□ 0.23
CCDC28A-203ENST00000617445 GIPRP48546 466 aa16.47■□□□□ 0.23
CCDC28A-203ENST00000617445 PTDSS1P48651 473 aaKnown RBP16.47■□□□□ 0.23
CCDC28A-203ENST00000617445 GALK2Q01415 458 aa16.47■□□□□ 0.23
CCDC28A-203ENST00000617445 HSP90B2PQ58FF3 399 aa16.47■□□□□ 0.23
CCDC28A-203ENST00000617445 KRT80Q6KB66 452 aa16.47■□□□□ 0.23
CCDC28A-203ENST00000617445 CGB2Q6NT52 195 aa16.47■□□□□ 0.23
CCDC28A-203ENST00000617445 LRFN4Q6PJG9 635 aa16.47■□□□□ 0.23
CCDC28A-203ENST00000617445 ARPINQ7Z6K5 226 aa16.47■□□□□ 0.23
CCDC28A-203ENST00000617445 SVOPLQ8N434 492 aa16.47■□□□□ 0.23
CCDC28A-203ENST00000617445 ANKS4BQ8N8V4 417 aa16.47■□□□□ 0.23
CCDC28A-203ENST00000617445 OR2T12Q8NG77 320 aa16.47■□□□□ 0.23
CCDC28A-203ENST00000617445 TMEM239Q8WW34 195 aa16.47■□□□□ 0.23
CCDC28A-203ENST00000617445 MRPL24Q96A35 216 aaKnown RBP16.47■□□□□ 0.23
CCDC28A-203ENST00000617445 SGTBQ96EQ0 304 aa16.47■□□□□ 0.23
CCDC28A-203ENST00000617445 FOXN4Q96NZ1 517 aa16.47■□□□□ 0.23
CCDC28A-203ENST00000617445 KCNK17Q96T54 332 aa16.47■□□□□ 0.23
CCDC28A-203ENST00000617445 DYNLRB1Q9NP97 96 aa16.47■□□□□ 0.23
CCDC28A-203ENST00000617445 LPAR3Q9UBY5 353 aa16.47■□□□□ 0.23
CCDC28A-203ENST00000617445 OR7A10O76100 309 aa16.46■□□□□ 0.23
CCDC28A-203ENST00000617445 SERPINA5P05154 406 aa16.46■□□□□ 0.23
CCDC28A-203ENST00000617445 IGHV4-31P0DP07 118 aa16.46■□□□□ 0.23
CCDC28A-203ENST00000617445 GIFP27352 417 aa16.46■□□□□ 0.23
CCDC28A-203ENST00000617445 DAP3P51398 398 aaKnown RBP16.46■□□□□ 0.23
CCDC28A-203ENST00000617445 SELENOWP63302 87 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms