RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 IL24Q13007 206 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 C2orf76Q3KRA6 126 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 PLEKHS1Q5SXH7 462 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 ZDHHC20Q5W0Z9 365 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 DMKNQ6E0U4 476 aaPredicted RBP4.81□□□□□ -1.64
USP28-213ENST00000544967 ACSM5Q6NUN0 579 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 SERPINA13PQ6UXR4 307 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 ADAMTSL4Q6UY14 1074 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 OR2W3Q7Z3T1 314 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 MRPL52Q86TS9 123 aaKnown RBP4.81□□□□□ -1.64
USP28-213ENST00000544967 ACBD7Q8N6N7 88 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 CHST14Q8NCH0 376 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 SDR9C7Q8NEX9 313 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 GPR32P1Q8NGA4 272 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 FCAMRQ8WWV6 532 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 RSC1A1Q92681 617 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 MTFMTQ96DP5 389 aaKnown RBP4.81□□□□□ -1.64
USP28-213ENST00000544967 COX14Q96I36 57 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 PRDM13Q9H4Q3 707 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 C14orf105Q9NVL8 296 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 NCDNQ9UBB6 729 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 UPB1Q9UBR1 384 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 PCDHB10Q9UN67 800 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 SPAG17Q6Q759 2223 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 ANKRD12Q6UB98 2062 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 IGLV3-16A0A075B6K0 115 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 AP4M1O00189 453 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 GPR31O00270 319 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 OGG1O15527 345 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 SEMA7AO75326 666 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 TUSC2O75896 110 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 TOXO94900 526 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 MT-ND4P03905 459 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 FURINP09958 794 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 ZNF8P17098 575 aaPredicted RBP4.81□□□□□ -1.64
USP28-213ENST00000544967 TUBG1P23258 451 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 MMP11P24347 488 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 ACRV1P26436 265 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 FRKP42685 505 aaPredicted RBP4.81□□□□□ -1.64
USP28-213ENST00000544967 RBP2P50120 134 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 CAPZA1P52907 286 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 ST8SIA6P61647 398 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 CPSF6Q16630 551 aaKnown RBP eCLIP4.81□□□□□ -1.64
USP28-213ENST00000544967 GLT8D1Q68CQ7 371 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 H3F3CQ6NXT2 135 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 ACOT7LQ6ZUV0 252 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 Q6ZVU0 165 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 SPNS2Q8IVW8 549 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 COMMD1Q8N668 190 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 ZNF248Q8NDW4 579 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 TMEM185AQ8NFB2 350 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 BBS10Q8TAM1 723 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 LCN9Q8WX39 176 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 MAL2Q969L2 176 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 NEU1Q99519 415 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 CIPCQ9C0C6 399 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 SUV39H2Q9H5I1 410 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 KRCC1Q9NPI7 259 aaPredicted RBP4.81□□□□□ -1.64
USP28-213ENST00000544967 TUBG2Q9NRH3 451 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 SERGEFQ9UGK8 458 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 RNF24Q9Y225 148 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 SLC9A8Q9Y2E8 581 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 TBC1D3DA0A087WVF3 549 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 TBC1D3IA0A087WXS9 549 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 TBC1D3EA0A087X179 549 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 TBC1D3KA0A087X1G2 549 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 TBC1D3FA6NER0 549 aaPredicted RBP4.8□□□□□ -1.64
USP28-213ENST00000544967 MGAT4DA6NG13 374 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 UNC119BA6NIH7 251 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 CD8B2A6NJW9 211 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 TBC1D3LB9A6J9 549 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 FAM227AF5H4B4 570 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 GAPDHSO14556 408 aaPredicted RBP4.8□□□□□ -1.64
USP28-213ENST00000544967 TERTO14746 1132 aaKnown RBP4.8□□□□□ -1.64
USP28-213ENST00000544967 FLRT2O43155 660 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 PPIHO43447 177 aaKnown RBP4.8□□□□□ -1.64
USP28-213ENST00000544967 NDUFS6O75380 124 aaKnown RBP4.8□□□□□ -1.64
USP28-213ENST00000544967 MTX2O75431 263 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 LEFTY1O75610 366 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 GBAP04062 536 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 SERPINA5P05154 406 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 SYPP08247 313 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 CSF1P09603 554 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 CD8BP10966 210 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 ACP5P13686 325 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 GNSP15586 552 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 CD27P26842 260 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 PLA2G5P39877 138 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 BUD31P41223 144 aaPredicted RBP4.8□□□□□ -1.64
USP28-213ENST00000544967 HBA1P69905 142 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 PJVKQ0ZLH3 352 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 ZSWIM7Q19AV6 140 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 KLHL26Q53HC5 615 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 FAM74A1Q5RGS3 127 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 AWAT2Q6E213 333 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 FAM71E1Q6IPT2 247 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 TBC1D3CQ6IPX1 549 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 TCEAL6Q6IPX3 200 aa4.8□□□□□ -1.64
USP28-213ENST00000544967 TBC1D3Q8IZP1 549 aaPredicted RBP4.8□□□□□ -1.64
USP28-213ENST00000544967 SYS1Q8N2H4 156 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms