RNA–Protein interactions for RNA: ENST00000512431.5

DDX41-215, Transcript of DEAD-box helicase 41, human

TSL 5

Gene DDX41, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX41-215	ENST00000512431	CALML5	Q9NZT1	146 aa		10.65	□□□□□ -0.7
DDX41-215	ENST00000512431	RPS6KB2	Q9UBS0	482 aa		10.65	□□□□□ -0.7
DDX41-215	ENST00000512431	PLSCR5	A0PG75	271 aa		10.64	□□□□□ -0.71
DDX41-215	ENST00000512431	IGHM	P01871	453 aa		10.64	□□□□□ -0.71
DDX41-215	ENST00000512431	PATE4	P0C8F1	98 aa		10.64	□□□□□ -0.71
DDX41-215	ENST00000512431	OR8G3P	P0DMU2	310 aa		10.64	□□□□□ -0.71
DDX41-215	ENST00000512431	PRG2	P13727	222 aa		10.64	□□□□□ -0.71
DDX41-215	ENST00000512431	ZNF12	P17014	697 aa		10.64	□□□□□ -0.71
DDX41-215	ENST00000512431	MAK	P20794	623 aa		10.64	□□□□□ -0.71
DDX41-215	ENST00000512431	CBL	P22681	906 aa		10.64	□□□□□ -0.71
DDX41-215	ENST00000512431	GRPR	P30550	384 aa		10.64	□□□□□ -0.71
DDX41-215	ENST00000512431	ALDH3A1	P30838	453 aa		10.64	□□□□□ -0.71
DDX41-215	ENST00000512431	SERPINB5	P36952	375 aa		10.64	□□□□□ -0.71
DDX41-215	ENST00000512431	UCP2	P55851	309 aa		10.64	□□□□□ -0.71
DDX41-215	ENST00000512431	RAG2	P55895	527 aa		10.64	□□□□□ -0.71
DDX41-215	ENST00000512431	EGR4	Q05215	589 aa		10.64	□□□□□ -0.71
DDX41-215	ENST00000512431	DPY19L1	Q2PZI1	675 aa		10.64	□□□□□ -0.71
DDX41-215	ENST00000512431	OLFML2A	Q68BL7	652 aa		10.64	□□□□□ -0.71
DDX41-215	ENST00000512431	TMEM53	Q6P2H8	277 aa		10.64	□□□□□ -0.71
DDX41-215	ENST00000512431	C1QL4	Q86Z23	238 aa		10.64	□□□□□ -0.71
DDX41-215	ENST00000512431	ZNF584	Q8IVC4	421 aa		10.64	□□□□□ -0.71
DDX41-215	ENST00000512431	KLHL36	Q8N4N3	616 aa		10.64	□□□□□ -0.71
DDX41-215	ENST00000512431	ZDHHC16	Q969W1	377 aa		10.64	□□□□□ -0.71
DDX41-215	ENST00000512431	TESC	Q96BS2	214 aa		10.64	□□□□□ -0.71
DDX41-215	ENST00000512431	PANX1	Q96RD7	426 aa		10.64	□□□□□ -0.71
DDX41-215	ENST00000512431	CITED1	Q99966	193 aa		10.64	□□□□□ -0.71
DDX41-215	ENST00000512431	ZNF224	Q9NZL3	707 aa		10.64	□□□□□ -0.71
DDX41-215	ENST00000512431	P2RX2	Q9UBL9	471 aa		10.64	□□□□□ -0.71
DDX41-215	ENST00000512431	ZNF443	Q9Y2A4	671 aa	Predicted RBP	10.64	□□□□□ -0.71
DDX41-215	ENST00000512431	INSIG2	Q9Y5U4	225 aa		10.64	□□□□□ -0.71
DDX41-215	ENST00000512431	GPR45	Q9Y5Y3	372 aa		10.64	□□□□□ -0.71
DDX41-215	ENST00000512431	PRKDC	P78527	4128 aa	Known RBP	10.64	□□□□□ -0.71
DDX41-215	ENST00000512431	CCDC154	A6NI56	674 aa		10.63	□□□□□ -0.71
DDX41-215	ENST00000512431	SPRY3	O43610	288 aa		10.63	□□□□□ -0.71
DDX41-215	ENST00000512431	FARS2	O95363	451 aa	Known RBP	10.63	□□□□□ -0.71
DDX41-215	ENST00000512431	SBK2	P0C263	348 aa		10.63	□□□□□ -0.71
DDX41-215	ENST00000512431	S100A3	P33764	101 aa		10.63	□□□□□ -0.71
DDX41-215	ENST00000512431	CLNS1A	P54105	237 aa	Known RBP	10.63	□□□□□ -0.71
DDX41-215	ENST00000512431	CRISP3	P54108	245 aa		10.63	□□□□□ -0.71
DDX41-215	ENST00000512431	GLO1	Q04760	184 aa		10.63	□□□□□ -0.71
DDX41-215	ENST00000512431	PLP2	Q04941	152 aa		10.63	□□□□□ -0.71
DDX41-215	ENST00000512431	PMS2P3	Q13401	168 aa		10.63	□□□□□ -0.71
DDX41-215	ENST00000512431	RNF220	Q5VTB9	566 aa		10.63	□□□□□ -0.71
DDX41-215	ENST00000512431	ZNF621	Q6ZSS3	439 aa		10.63	□□□□□ -0.71
DDX41-215	ENST00000512431	SERPINA11	Q86U17	422 aa		10.63	□□□□□ -0.71
DDX41-215	ENST00000512431	SKA3	Q8IX90	412 aa		10.63	□□□□□ -0.71
DDX41-215	ENST00000512431	C4orf33	Q8N1A6	199 aa		10.63	□□□□□ -0.71
DDX41-215	ENST00000512431	CLIP4	Q8N3C7	705 aa		10.63	□□□□□ -0.71
DDX41-215	ENST00000512431	SLC22A24	Q8N4F4	322 aa		10.63	□□□□□ -0.71
DDX41-215	ENST00000512431	SPIC	Q8N5J4	248 aa		10.63	□□□□□ -0.71
DDX41-215	ENST00000512431	ADPRHL1	Q8NDY3	354 aa		10.63	□□□□□ -0.71
DDX41-215	ENST00000512431	TAAR8	Q969N4	342 aa		10.63	□□□□□ -0.71
DDX41-215	ENST00000512431	CCDC115	Q96NT0	180 aa		10.63	□□□□□ -0.71
DDX41-215	ENST00000512431	ZIM3	Q96PE6	472 aa		10.63	□□□□□ -0.71
DDX41-215	ENST00000512431	DIRC2	Q96SL1	478 aa		10.63	□□□□□ -0.71
DDX41-215	ENST00000512431	RBM4B	Q9BQ04	359 aa	Known RBP	10.63	□□□□□ -0.71
DDX41-215	ENST00000512431	SLC30A2	Q9BRI3	323 aa		10.63	□□□□□ -0.71
DDX41-215	ENST00000512431	ASPN	Q9BXN1	380 aa		10.63	□□□□□ -0.71
DDX41-215	ENST00000512431	OR5V1	Q9UGF6	321 aa		10.63	□□□□□ -0.71
DDX41-215	ENST00000512431	BTNL2	Q9UIR0	455 aa		10.63	□□□□□ -0.71
DDX41-215	ENST00000512431	NPTN	Q9Y639	398 aa		10.63	□□□□□ -0.71
DDX41-215	ENST00000512431	TRAV36DV7	A0A075B6V5	113 aa		10.62	□□□□□ -0.71
DDX41-215	ENST00000512431	IQCM	A0A1B0GVH7	501 aa		10.62	□□□□□ -0.71
DDX41-215	ENST00000512431	TMEM247	A6NEH6	219 aa		10.62	□□□□□ -0.71
DDX41-215	ENST00000512431	FAM181B	A6NEQ2	426 aa		10.62	□□□□□ -0.71
DDX41-215	ENST00000512431	SMIM23	A6NLE4	172 aa		10.62	□□□□□ -0.71
DDX41-215	ENST00000512431	MS4A18	H0YCH9	400 aa		10.62	□□□□□ -0.71
DDX41-215	ENST00000512431	TRAPPC2L	H3BP13	241 aa		10.62	□□□□□ -0.71
DDX41-215	ENST00000512431	HOXA3	O43365	443 aa	Predicted RBP	10.62	□□□□□ -0.71
DDX41-215	ENST00000512431	UBOX5	O94941	541 aa		10.62	□□□□□ -0.71
DDX41-215	ENST00000512431	KRT75	O95678	551 aa		10.62	□□□□□ -0.71
DDX41-215	ENST00000512431	IGHV3-13	P01766	116 aa		10.62	□□□□□ -0.71
DDX41-215	ENST00000512431	CCL2	P13500	99 aa		10.62	□□□□□ -0.71
DDX41-215	ENST00000512431	HLA-DOB	P13765	273 aa		10.62	□□□□□ -0.71
DDX41-215	ENST00000512431	CSNK1A1	P48729	337 aa		10.62	□□□□□ -0.71
DDX41-215	ENST00000512431	ERVS71-1	P61550	626 aa		10.62	□□□□□ -0.71
DDX41-215	ENST00000512431	WHAMMP3	Q1A5X7	153 aa		10.62	□□□□□ -0.71
DDX41-215	ENST00000512431	MS4A18	Q3C1V0	323 aa		10.62	□□□□□ -0.71
DDX41-215	ENST00000512431	ZNF718	Q3SXZ3	478 aa		10.62	□□□□□ -0.71
DDX41-215	ENST00000512431	PDCD4	Q53EL6	469 aa	Known RBP	10.62	□□□□□ -0.71
DDX41-215	ENST00000512431	SPANXN4	Q5MJ08	99 aa		10.62	□□□□□ -0.71
DDX41-215	ENST00000512431	UNQ6126/PRO20091	Q6UXV3	157 aa		10.62	□□□□□ -0.71
DDX41-215	ENST00000512431	C9orf139	Q6ZV77	190 aa		10.62	□□□□□ -0.71
DDX41-215	ENST00000512431	DPPA2	Q7Z7J5	298 aa		10.62	□□□□□ -0.71
DDX41-215	ENST00000512431	PARP8	Q8N3A8	854 aa		10.62	□□□□□ -0.71
DDX41-215	ENST00000512431	NOA1	Q8NC60	698 aa	Known RBP	10.62	□□□□□ -0.71
DDX41-215	ENST00000512431	OR1J1	Q8NGS3	322 aa		10.62	□□□□□ -0.71
DDX41-215	ENST00000512431	TXNDC15	Q96J42	360 aa		10.62	□□□□□ -0.71
DDX41-215	ENST00000512431	DCLRE1C	Q96SD1	692 aa	Known RBP	10.62	□□□□□ -0.71
DDX41-215	ENST00000512431	SPATA9	Q9BWV2	254 aa		10.62	□□□□□ -0.71
DDX41-215	ENST00000512431	C12orf10	Q9HB07	376 aa		10.62	□□□□□ -0.71
DDX41-215	ENST00000512431	CYSLTR2	Q9NS75	346 aa		10.62	□□□□□ -0.71
DDX41-215	ENST00000512431	EGFL7	Q9UHF1	273 aa		10.62	□□□□□ -0.71
DDX41-215	ENST00000512431	POLR3K	Q9Y2Y1	108 aa	Predicted RBP	10.62	□□□□□ -0.71
DDX41-215	ENST00000512431	IFT52	Q9Y366	437 aa		10.62	□□□□□ -0.71
DDX41-215	ENST00000512431	IGHV3OR16-10	A0A075B7F0	116 aa		10.61	□□□□□ -0.71
DDX41-215	ENST00000512431		A0A087WUJ7	227 aa		10.61	□□□□□ -0.71
DDX41-215	ENST00000512431	CLPSL1	A2RUU4	121 aa		10.61	□□□□□ -0.71
DDX41-215	ENST00000512431	FZD7	O75084	574 aa		10.61	□□□□□ -0.71
DDX41-215	ENST00000512431	SNAP29	O95721	258 aa		10.61	□□□□□ -0.71

Retrieved 100 of 20,778 RNA–protein pairs in 63 ms