RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 ZNF566Q969W8 418 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 MSI2Q96DH6 328 aaKnown RBP6.12□□□□□ -1.43
VPS41-208ENST00000448833 SLC25A44Q96H78 314 aaPredicted RBP6.12□□□□□ -1.43
VPS41-208ENST00000448833 ATP6V1G3Q96LB4 118 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 FOXB1Q99853 325 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 POLR2J2Q9GZM3 115 aaKnown RBP6.12□□□□□ -1.43
VPS41-208ENST00000448833 POLR2J3Q9H1A7 115 aaKnown RBP6.12□□□□□ -1.43
VPS41-208ENST00000448833 KCNN2Q9H2S1 579 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 NELFAQ9H3P2 528 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 ZNF385DQ9H6B1 395 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 NOX3Q9HBY0 568 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 INTS9Q9NV88 658 aaKnown RBP6.12□□□□□ -1.43
VPS41-208ENST00000448833 B3GNT2Q9NY97 397 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 GLTPQ9NZD2 209 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 REV1Q9UBZ9 1251 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 SLC7A8Q9UHI5 535 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 ZNF229Q9UJW7 825 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 IGKV1D-42A0A075B6H8 117 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 A0A1W2PRG6 482 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 SH3PXD2BA1X283 911 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 TRAPPC13A5PLN9 417 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 GMNCA6NCL1 334 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 B4DSR2 109 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 M0QX08 132 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 RNF13O43567 381 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 LY6HO94772 140 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 IGF2P01344 180 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 HLA-HP01893 362 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 SERPINA5P05154 406 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 ADRA2AP08913 450 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 ZNF35P13682 527 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 ZNF14P17017 642 aaPredicted RBP6.11□□□□□ -1.43
VPS41-208ENST00000448833 ZNF16P17020 682 aaPredicted RBP6.11□□□□□ -1.43
VPS41-208ENST00000448833 CD247P20963 164 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 CBLP22681 906 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 APEX1P27695 318 aaKnown RBP6.11□□□□□ -1.43
VPS41-208ENST00000448833 AQP1P29972 269 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 GUCA1AP43080 201 aaPredicted RBP6.11□□□□□ -1.43
VPS41-208ENST00000448833 RAD52P43351 418 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 PTDSS1P48651 473 aaKnown RBP6.11□□□□□ -1.43
VPS41-208ENST00000448833 ZNF84P51523 738 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 BIDP55957 195 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 PCBP3P57721 371 aaKnown RBP6.11□□□□□ -1.43
VPS41-208ENST00000448833 TUBA1BP68363 451 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 TUBA4AP68366 448 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 TEKQ02763 1124 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 PLP2Q04941 152 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 PIGFQ07326 219 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 CYLC2Q14093 348 aaPredicted RBP6.11□□□□□ -1.43
VPS41-208ENST00000448833 PCGF3Q3KNV8 242 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 SLC36A2Q495M3 483 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 GLIPR1L2Q4G1C9 344 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 ENTPD8Q5MY95 495 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 CARD17Q5XLA6 110 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 KRT80Q6KB66 452 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 DLEU7Q6UYE1 221 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 TUBA1AQ71U36 451 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 SLC35D2Q76EJ3 337 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 DHDDSQ86SQ9 333 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 MSRB3Q8IXL7 192 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 RFLNBQ8N5W9 214 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 FNDC8Q8TC99 324 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 ADAMTS16Q8TE57 1224 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 MRPL24Q96A35 216 aaKnown RBP6.11□□□□□ -1.43
VPS41-208ENST00000448833 ZBTB9Q96C00 473 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 MAGEB18Q96M61 343 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 MOGAT1Q96PD6 335 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 EBF4Q9BQW3 602 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 CPPED1Q9BRF8 314 aaPredicted RBP6.11□□□□□ -1.43
VPS41-208ENST00000448833 EMC6Q9BV81 110 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 ZNF416Q9BWM5 594 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 BPESC1Q9GZL8 116 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 PCDHAC1Q9H158 963 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 CHODLQ9H9P2 273 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 SLCO1B3Q9NPD5 702 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 SLC52A3Q9NQ40 469 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 ARGLU1Q9NWB6 273 aaPredicted RBP6.11□□□□□ -1.43
VPS41-208ENST00000448833 MED29Q9NX70 200 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 SLCO1C1Q9NYB5 712 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 SLAMF8Q9P0V8 285 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 TMEFF2Q9UIK5 374 aaPredicted RBP6.11□□□□□ -1.43
VPS41-208ENST00000448833 BAG5Q9UL15 447 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 FBN3Q75N90 2809 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 CUBNO60494 3623 aa6.11□□□□□ -1.43
VPS41-208ENST00000448833 A0A0A6YYJ9 748 aa6.1□□□□□ -1.43
VPS41-208ENST00000448833 IGHV4-61A0A0C4DH41 118 aa6.1□□□□□ -1.43
VPS41-208ENST00000448833 IQCMA0A1B0GVH7 501 aa6.1□□□□□ -1.43
VPS41-208ENST00000448833 TMEM129A0AVI4 362 aa6.1□□□□□ -1.43
VPS41-208ENST00000448833 TCF21O43680 179 aa6.1□□□□□ -1.43
VPS41-208ENST00000448833 BCL10O95999 233 aa6.1□□□□□ -1.43
VPS41-208ENST00000448833 HPRP00739 348 aa6.1□□□□□ -1.43
VPS41-208ENST00000448833 IGHG1P01857 330 aa6.1□□□□□ -1.43
VPS41-208ENST00000448833 TFP02787 698 aa6.1□□□□□ -1.43
VPS41-208ENST00000448833 CELA3BP08861 270 aa6.1□□□□□ -1.43
VPS41-208ENST00000448833 THRBP10828 461 aa6.1□□□□□ -1.43
VPS41-208ENST00000448833 UMPSP11172 480 aa6.1□□□□□ -1.43
VPS41-208ENST00000448833 HLA-DOBP13765 273 aa6.1□□□□□ -1.43
VPS41-208ENST00000448833 B4GALT1P15291 398 aa6.1□□□□□ -1.43
VPS41-208ENST00000448833 ACHEP22303 614 aa6.1□□□□□ -1.43
VPS41-208ENST00000448833 IGFBP5P24593 272 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 136.3 ms