RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 AKR7A2O43488 359 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 STC2O76061 302 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 MBPP02686 304 aaPredicted RBP4.51□□□□□ -1.69
CSMD3-201ENST00000297405 ALDOCP09972 364 aaKnown RBP4.51□□□□□ -1.69
CSMD3-201ENST00000297405 EPXP11678 715 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 FPGSQ05932 587 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 TECRLQ5HYJ1 363 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 LRRC25Q8N386 305 aaPredicted RBP4.51□□□□□ -1.69
CSMD3-201ENST00000297405 WDFY2Q96P53 400 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 ANGPTL4Q9BY76 406 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 CHRNA10Q9GZZ6 450 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 PSORS1C1Q9UIG5 152 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 PIK3C2BO00750 1634 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 C9J4A7 227 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 CST4P01036 141 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 TMEM11P17152 192 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 RFX5P48382 616 aaPredicted RBP4.51□□□□□ -1.69
CSMD3-201ENST00000297405 RAC1P63000 192 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 SPP2Q13103 211 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 PTPRCAPQ14761 206 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 NXNL2Q5VZ03 156 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 ZNF322Q6U7Q0 402 aaPredicted RBP4.51□□□□□ -1.69
CSMD3-201ENST00000297405 CSNK1A1LQ8N752 337 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 OR2G3Q8NGZ4 309 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 DAZLQ92904 295 aaKnown RBP4.51□□□□□ -1.69
CSMD3-201ENST00000297405 MCHR1Q99705 422 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 TRAV1-2A0A0B4J238 106 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 SYT5O00445 386 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 FZD6O60353 706 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 BRS3P32247 399 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 GDNFP39905 211 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 CD96P40200 585 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 HERVK_113P61574 105 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 SLC14A1Q13336 389 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 EXOSC2Q13868 293 aaKnown RBP4.5□□□□□ -1.69
CSMD3-201ENST00000297405 PNLIPRP3Q17RR3 467 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 PLA1AQ53H76 456 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 SPRED1Q7Z699 444 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 ZDHHC22Q8N966 263 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 OR4S1Q8NGB4 309 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 OR10A7Q8NGE5 316 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 INTS12Q96CB8 462 aaKnown RBP4.5□□□□□ -1.69
CSMD3-201ENST00000297405 FAM210BQ96KR6 192 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 NIPSNAP1Q9BPW8 284 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 PEF1Q9UBV8 284 aaKnown RBP4.5□□□□□ -1.69
CSMD3-201ENST00000297405 TRAPPC2LQ9UL33 140 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 GPR55Q9Y2T6 319 aaPredicted RBP4.5□□□□□ -1.69
CSMD3-201ENST00000297405 LSM5Q9Y4Y9 91 aaKnown RBP4.5□□□□□ -1.69
CSMD3-201ENST00000297405 TIMM8BQ9Y5J9 83 aaPredicted RBP4.5□□□□□ -1.69
CSMD3-201ENST00000297405 LACTBL1A8MY62 500 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 GABRPO00591 440 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 FBXO24O75426 580 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 LIMS3P0CW19 117 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 LIMS4P0CW20 117 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 SPATA31C1P0DKV0 1188 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 CSNK1EP49674 416 aaKnown RBP4.5□□□□□ -1.69
CSMD3-201ENST00000297405 AGFG1P52594 562 aaKnown RBP4.5□□□□□ -1.69
CSMD3-201ENST00000297405 OR2G6Q5TZ20 316 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 SERPINA9Q86WD7 417 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 DDOQ99489 341 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 C19orf43Q9BQ61 176 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 CHRM4P08173 479 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 INSRRP14616 1297 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 CD82P27701 267 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 ETFDHQ16134 617 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 C9orf57Q5W0N0 161 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 OR52W1Q6IF63 320 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 LRRTM1Q86UE6 522 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 FAM169BQ8N8A8 192 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 CHST14Q8NCH0 376 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 SGPP1Q9BX95 441 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 DLL4Q9NR61 685 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 MANBAO00462 879 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 TP73O15350 636 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 SEPT4O43236 478 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 VIPP01282 170 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 ALDOAP04075 364 aaKnown RBP4.5□□□□□ -1.69
CSMD3-201ENST00000297405 ARNTP27540 789 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 CNR2P34972 360 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 CATSPEREQ5SY80 951 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 VWA1Q6PCB0 445 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 LAX1Q8IWV1 398 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 PACRGQ96M98 296 aaPredicted RBP4.5□□□□□ -1.69
CSMD3-201ENST00000297405 NIFKQ9BYG3 293 aaKnown RBP4.5□□□□□ -1.69
CSMD3-201ENST00000297405 YARS2Q9Y2Z4 477 aaKnown RBP4.5□□□□□ -1.69
CSMD3-201ENST00000297405 USP54Q70EL1 1684 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 WDR1O75083 606 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 LIPCP11150 499 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 EBPQ15125 230 aaKnown RBP4.5□□□□□ -1.69
CSMD3-201ENST00000297405 TIGD5Q53EQ6 642 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 LYPD4Q6UWN0 246 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 OR51A4Q8NGJ6 313 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 ZC3HAV1LQ96H79 300 aaKnown RBP4.5□□□□□ -1.69
CSMD3-201ENST00000297405 KCNK12Q9HB15 430 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 CENPMQ9NSP4 180 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 NCOR2Q9Y618 2525 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 SSC5DA1L4H1 1573 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 ADAMTSL3P82987 1691 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 PRAMEF22A3QJZ6 481 aa4.5□□□□□ -1.69
CSMD3-201ENST00000297405 TXNDC12O95881 172 aa4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms