RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 FOXE1O00358 373 aaPredicted RBP4.82□□□□□ -1.64
USP28-213ENST00000544967 ARPC5O15511 151 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 CYTIPO60759 359 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 NME6O75414 186 aaPredicted RBP4.82□□□□□ -1.64
USP28-213ENST00000544967 MT-ND5P03915 603 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 DCNP07585 359 aaKnown RBP4.82□□□□□ -1.64
USP28-213ENST00000544967 CELP19835 753 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 MAT2AP31153 395 aaKnown RBP4.82□□□□□ -1.64
USP28-213ENST00000544967 CCR6P51684 374 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 ART1P52961 327 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 CDH11P55287 796 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 MAXP61244 160 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 RNF4P78317 190 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 RAE1P78406 368 aaKnown RBP4.82□□□□□ -1.64
USP28-213ENST00000544967 OR2B11Q5JQS5 317 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 MANEAQ5SRI9 462 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 KIAA0895LQ68EN5 471 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 PTRHD1Q6GMV3 140 aaKnown RBP4.82□□□□□ -1.64
USP28-213ENST00000544967 PARS2Q7L3T8 475 aaKnown RBP4.82□□□□□ -1.64
USP28-213ENST00000544967 DCXRQ7Z4W1 244 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 ADCK2Q7Z695 626 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 MCEMP1Q8IX19 187 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 OR6N1Q8NGY5 312 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 CYB5D2Q8WUJ1 264 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 CCDC107Q8WV48 283 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 SPRYD4Q8WW59 207 aaPredicted RBP4.82□□□□□ -1.64
USP28-213ENST00000544967 DIO2Q92813 273 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 ZNF607Q96SK3 696 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 SF3B5Q9BWJ5 86 aaKnown RBP4.82□□□□□ -1.64
USP28-213ENST00000544967 LGR4Q9BXB1 951 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 BCL2L10Q9HD36 194 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 CA10Q9NS85 328 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 A4GNTQ9UNA3 340 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 TNFSF18Q9UNG2 199 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 A0A1B0GTI1 187 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 TCRBV21S2A2A0A5A6 115 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 CDHR4A6H8M9 788 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 C1QTNF3-AMACRE9PGA6 284 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 K7ERQ8 282 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 YY2O15391 372 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 LAMTOR5O43504 91 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 PCDH8O95206 1070 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 ANKRD34CP0C6C1 535 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 CLUP10909 449 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 ETFAP13804 333 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 ADRB3P13945 408 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 ABCD3P28288 659 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 LAP3P28838 519 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 CRATP43155 626 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 KCNJ3P48549 501 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 SRP9P49458 86 aaKnown RBP4.81□□□□□ -1.64
USP28-213ENST00000544967 EIF5AP63241 154 aaKnown RBP4.81□□□□□ -1.64
USP28-213ENST00000544967 ACTC1P68032 377 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 ACTA1P68133 377 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 POU4F2Q12837 409 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 PDZK1IP1Q13113 114 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 SRSF5Q13243 272 aaKnown RBP4.81□□□□□ -1.64
USP28-213ENST00000544967 IRF4Q15306 451 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 C18orf21Q32NC0 220 aaPredicted RBP4.81□□□□□ -1.64
USP28-213ENST00000544967 ATXN7L2Q5T6C5 722 aaPredicted RBP4.81□□□□□ -1.64
USP28-213ENST00000544967 TSSK4Q6SA08 328 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 UNQ9370/PRO34162Q6UXP9 181 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 GDPD4Q6W3E5 623 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 HDDC3Q8N4P3 179 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 SLC30A7Q8NEW0 376 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 GPR156Q8NFN8 814 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 TSTD1Q8NFU3 115 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 RPS4Y2Q8TD47 263 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 CCDC74AQ96AQ1 378 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 CMSS1Q9BQ75 279 aaKnown RBP4.81□□□□□ -1.64
USP28-213ENST00000544967 TMED9Q9BVK6 235 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 TREM1Q9NP99 234 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 TMEM160Q9NX00 188 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 HAO2Q9NYQ3 351 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 TP53TG5Q9Y2B4 290 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 TMEM200CA6NKL6 621 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 AHRRA9YTQ3 701 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 ZNF879B4DU55 563 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 ANKRD66B4E2M5 251 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 C3orf80F5H4A9 247 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 ARPC1BO15143 372 aaKnown RBP4.81□□□□□ -1.64
USP28-213ENST00000544967 SURF4O15260 269 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 CTAG2O75638 210 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 NCR1O76036 304 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 PMS2P2O95744 297 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 CD3GP09693 182 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 UCHL1P09936 223 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 STAG3L3P0CL85 134 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 OR12D1P0DN82 309 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 EPXP11678 715 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 MUC1P15941 1255 aaPredicted RBP4.81□□□□□ -1.64
USP28-213ENST00000544967 ADCYAP1P18509 176 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 FPR3P25089 353 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 CD1CP29017 333 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 OR1E2P47887 323 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 ZNF41P51814 821 aaPredicted RBP4.81□□□□□ -1.64
USP28-213ENST00000544967 PFN3P60673 137 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 RAB2AP61019 212 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 NHLH1Q02575 133 aa4.81□□□□□ -1.64
USP28-213ENST00000544967 ZNF763Q0D2J5 394 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms