RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 ADORA3P0DMS8 318 aa17.98■□□□□ 0.47
SDC1-205ENST00000447124 THBS4P35443 961 aa17.98■□□□□ 0.47
SDC1-205ENST00000447124 ARR3P36575 388 aa17.98■□□□□ 0.47
SDC1-205ENST00000447124 ARFIP2P53365 341 aa17.98■□□□□ 0.47
SDC1-205ENST00000447124 ZP4Q12836 540 aa17.98■□□□□ 0.47
SDC1-205ENST00000447124 TTC33Q6PID6 262 aaPredicted RBP17.98■□□□□ 0.47
SDC1-205ENST00000447124 ANKS4BQ8N8V4 417 aa17.98■□□□□ 0.47
SDC1-205ENST00000447124 OR4F15Q8NGB8 312 aa17.98■□□□□ 0.47
SDC1-205ENST00000447124 ZNF583Q96ND8 569 aa17.98■□□□□ 0.47
SDC1-205ENST00000447124 ZNF426Q9BUY5 554 aa17.98■□□□□ 0.47
SDC1-205ENST00000447124 PCDHAC1Q9H158 963 aa17.98■□□□□ 0.47
SDC1-205ENST00000447124 PLK3Q9H4B4 646 aa17.98■□□□□ 0.47
SDC1-205ENST00000447124 FGFR1OP2Q9NVK5 253 aa17.98■□□□□ 0.47
SDC1-205ENST00000447124 ZNF446Q9NWS9 450 aa17.98■□□□□ 0.47
SDC1-205ENST00000447124 IGHV2OR16-5A0A0B4J2B6 119 aa17.97■□□□□ 0.47
SDC1-205ENST00000447124 LOC100653049A0A140TA62 436 aa17.97■□□□□ 0.47
SDC1-205ENST00000447124 TMEM129A0AVI4 362 aa17.97■□□□□ 0.47
SDC1-205ENST00000447124 B9A039 149 aa17.97■□□□□ 0.47
SDC1-205ENST00000447124 KRT34O76011 436 aa17.97■□□□□ 0.47
SDC1-205ENST00000447124 IFNGR1P15260 489 aa17.97■□□□□ 0.47
SDC1-205ENST00000447124 SLC25A16P16260 332 aa17.97■□□□□ 0.47
SDC1-205ENST00000447124 BIDP55957 195 aa17.97■□□□□ 0.47
SDC1-205ENST00000447124 NPRL3Q12980 569 aa17.97■□□□□ 0.47
SDC1-205ENST00000447124 EFNB3Q15768 340 aa17.97■□□□□ 0.47
SDC1-205ENST00000447124 TMEM249Q2WGJ8 235 aa17.97■□□□□ 0.47
SDC1-205ENST00000447124 INTS11Q5TA45 600 aaKnown RBP17.97■□□□□ 0.47
SDC1-205ENST00000447124 ZNF627Q7L945 461 aa17.97■□□□□ 0.47
SDC1-205ENST00000447124 CCDC36Q8IYA8 594 aa17.97■□□□□ 0.47
SDC1-205ENST00000447124 NUP37Q8NFH4 326 aa17.97■□□□□ 0.47
SDC1-205ENST00000447124 OR6N1Q8NGY5 312 aa17.97■□□□□ 0.47
SDC1-205ENST00000447124 SLC26A7Q8TE54 656 aa17.97■□□□□ 0.47
SDC1-205ENST00000447124 DOK1Q99704 481 aa17.97■□□□□ 0.47
SDC1-205ENST00000447124 MOV10Q9HCE1 1003 aaKnown RBP17.97■□□□□ 0.47
SDC1-205ENST00000447124 MEPEQ9NQ76 525 aaPredicted RBP17.97■□□□□ 0.47
SDC1-205ENST00000447124 ZNF224Q9NZL3 707 aa17.97■□□□□ 0.47
SDC1-205ENST00000447124 POFUT2Q9Y2G5 429 aa17.97■□□□□ 0.47
SDC1-205ENST00000447124 FBN1P35555 2871 aaKnown RBP17.96■□□□□ 0.47
SDC1-205ENST00000447124 VWC2LB2RUY7 222 aa17.96■□□□□ 0.47
SDC1-205ENST00000447124 PDE5AO76074 875 aa17.96■□□□□ 0.47
SDC1-205ENST00000447124 TNFRSF1BP20333 461 aa17.96■□□□□ 0.47
SDC1-205ENST00000447124 CAPZA2P47755 286 aa17.96■□□□□ 0.47
SDC1-205ENST00000447124 SNRPD2P62316 118 aaKnown RBP17.96■□□□□ 0.47
SDC1-205ENST00000447124 PIGFQ07326 219 aa17.96■□□□□ 0.47
SDC1-205ENST00000447124 REP15Q6BDI9 236 aa17.96■□□□□ 0.47
SDC1-205ENST00000447124 ZNF813Q6ZN06 617 aa17.96■□□□□ 0.47
SDC1-205ENST00000447124 OR8J3Q8NGG0 315 aa17.96■□□□□ 0.47
SDC1-205ENST00000447124 PROX1Q92786 737 aa17.96■□□□□ 0.47
SDC1-205ENST00000447124 TMEM54Q969K7 222 aa17.96■□□□□ 0.47
SDC1-205ENST00000447124 MPP4Q96JB8 637 aa17.96■□□□□ 0.47
SDC1-205ENST00000447124 VRK1Q99986 396 aaPredicted RBP17.96■□□□□ 0.47
SDC1-205ENST00000447124 ECSITQ9BQ95 431 aa17.96■□□□□ 0.47
SDC1-205ENST00000447124 KPNA4O00629 521 aaPredicted RBP17.95■□□□□ 0.46
SDC1-205ENST00000447124 MRASO14807 208 aa17.95■□□□□ 0.46
SDC1-205ENST00000447124 OR6A2O95222 327 aa17.95■□□□□ 0.46
SDC1-205ENST00000447124 IGFBP1P08833 259 aaPredicted RBP17.95■□□□□ 0.46
SDC1-205ENST00000447124 ASAH2BP0C7U1 165 aa17.95■□□□□ 0.46
SDC1-205ENST00000447124 TROVE2P10155 538 aaKnown RBP eCLIP17.95■□□□□ 0.46
SDC1-205ENST00000447124 CD79AP11912 226 aa17.95■□□□□ 0.46
SDC1-205ENST00000447124 B4GALT1P15291 398 aa17.95■□□□□ 0.46
SDC1-205ENST00000447124 MSMPQ1L6U9 139 aa17.95■□□□□ 0.46
SDC1-205ENST00000447124 COQ5Q5HYK3 327 aa17.95■□□□□ 0.46
SDC1-205ENST00000447124 LRFN4Q6PJG9 635 aa17.95■□□□□ 0.46
SDC1-205ENST00000447124 SLC35D2Q76EJ3 337 aa17.95■□□□□ 0.46
SDC1-205ENST00000447124 SLC46A3Q7Z3Q1 461 aa17.95■□□□□ 0.46
SDC1-205ENST00000447124 CARM1Q86X55 608 aa17.95■□□□□ 0.46
SDC1-205ENST00000447124 HIPK1Q86Z02 1210 aa17.95■□□□□ 0.46
SDC1-205ENST00000447124 NKAIN4Q8IVV8 208 aa17.95■□□□□ 0.46
SDC1-205ENST00000447124 OR6X1Q8NH79 312 aa17.95■□□□□ 0.46
SDC1-205ENST00000447124 FGFBP3Q8TAT2 258 aa17.95■□□□□ 0.46
SDC1-205ENST00000447124 C10orf82Q8WW14 230 aa17.95■□□□□ 0.46
SDC1-205ENST00000447124 MS4A3Q96HJ5 214 aa17.95■□□□□ 0.46
SDC1-205ENST00000447124 SH3GL1Q99961 368 aa17.95■□□□□ 0.46
SDC1-205ENST00000447124 ULBP2Q9BZM5 246 aa17.95■□□□□ 0.46
SDC1-205ENST00000447124 ZNF442Q9H7R0 627 aa17.95■□□□□ 0.46
SDC1-205ENST00000447124 B3GAT2Q9NPZ5 323 aa17.95■□□□□ 0.46
SDC1-205ENST00000447124 NANSQ9NR45 359 aa17.95■□□□□ 0.46
SDC1-205ENST00000447124 SH3GLB1Q9Y371 365 aa17.95■□□□□ 0.46
SDC1-205ENST00000447124 COL6A5A8TX70 2615 aa17.94■□□□□ 0.46
SDC1-205ENST00000447124 SHOX2O60902 331 aaPredicted RBP17.94■□□□□ 0.46
SDC1-205ENST00000447124 PATE4P0C8F1 98 aa17.94■□□□□ 0.46
SDC1-205ENST00000447124 CSNK1A1P48729 337 aa17.94■□□□□ 0.46
SDC1-205ENST00000447124 VLDLRP98155 873 aa17.94■□□□□ 0.46
SDC1-205ENST00000447124 MMEL1Q495T6 779 aa17.94■□□□□ 0.46
SDC1-205ENST00000447124 SNX32Q86XE0 403 aa17.94■□□□□ 0.46
SDC1-205ENST00000447124 ZCCHC24Q8N2G6 241 aaKnown RBP17.94■□□□□ 0.46
SDC1-205ENST00000447124 IL17RDQ8NFM7 739 aa17.94■□□□□ 0.46
SDC1-205ENST00000447124 FOXN4Q96NZ1 517 aa17.94■□□□□ 0.46
SDC1-205ENST00000447124 FOXB1Q99853 325 aa17.94■□□□□ 0.46
SDC1-205ENST00000447124 SLC19A3Q9BZV2 496 aa17.94■□□□□ 0.46
SDC1-205ENST00000447124 GLTPQ9NZD2 209 aa17.94■□□□□ 0.46
SDC1-205ENST00000447124 ZNF229Q9UJW7 825 aa17.94■□□□□ 0.46
SDC1-205ENST00000447124 A8MV72 311 aaPredicted RBP17.93■□□□□ 0.46
SDC1-205ENST00000447124 NPPAP01160 153 aa17.93■□□□□ 0.46
SDC1-205ENST00000447124 CSF3P09919 207 aa17.93■□□□□ 0.46
SDC1-205ENST00000447124 ZNF35P13682 527 aa17.93■□□□□ 0.46
SDC1-205ENST00000447124 ZNF14P17017 642 aaPredicted RBP17.93■□□□□ 0.46
SDC1-205ENST00000447124 NPR2P20594 1047 aa17.93■□□□□ 0.46
SDC1-205ENST00000447124 USF1P22415 310 aaPredicted RBP17.93■□□□□ 0.46
SDC1-205ENST00000447124 NR4A1P22736 598 aa17.93■□□□□ 0.46
SDC1-205ENST00000447124 PDLIM4P50479 330 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms