RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 CTSEP14091 401 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 ADRA2CP18825 462 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 VAMP1P23763 118 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 ARRB1P49407 418 aaPredicted RBP7.89□□□□□ -1.15
USP40-203ENST00000427112 NRG3P56975 720 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 RPS21P63220 83 aaKnown RBP7.89□□□□□ -1.15
USP40-203ENST00000427112 DUSP8Q13202 625 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 CD226Q15762 336 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 SEZ6L2Q6UXD5 910 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 Q6ZSR6 202 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 PAQR7Q86WK9 346 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 TTLQ8NG68 377 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 OR13H1Q8NG92 308 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 NPRL2Q8WTW4 380 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 SGTBQ96EQ0 304 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 CMKLR1Q99788 373 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 TEX101Q9BY14 249 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 RANBP3Q9H6Z4 567 aaPredicted RBP7.89□□□□□ -1.15
USP40-203ENST00000427112 NT5DC2Q9H857 520 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 MKKSQ9NPJ1 570 aaPredicted RBP7.89□□□□□ -1.15
USP40-203ENST00000427112 KLF15Q9UIH9 416 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 ST6GALNAC2Q9UJ37 374 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 LAMP5Q9UJQ1 280 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 ZNF223Q9UK11 482 aaPredicted RBP7.89□□□□□ -1.15
USP40-203ENST00000427112 MAB21L2Q9Y586 359 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 PCDH15Q96QU1 1955 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 EEF1E1-BLOC1S5C9J1V9 151 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 UBL3O95164 117 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 ZNF205O95201 554 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 OR6A2O95222 327 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 IFNA7P01567 189 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 VSIG10L2P0DP72 767 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 GLI4P10075 376 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 P2RX1P51575 399 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 PSG6Q00889 435 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 BIKQ13323 160 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 DUSP6Q16828 381 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 ARHGAP11BQ3KRB8 267 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 C3P1Q6ZMU1 363 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 LSMEM1Q8N8F7 131 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 SLC37A2Q8TED4 501 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 FBXW5Q969U6 566 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 GAL3ST3Q96A11 431 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 SLC25A28Q96A46 364 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 KTI12Q96EK9 354 aaPredicted RBP7.89□□□□□ -1.15
USP40-203ENST00000427112 S100A16Q96FQ6 103 aaKnown RBP7.89□□□□□ -1.15
USP40-203ENST00000427112 ZFYVE21Q9BQ24 234 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 PBX4Q9BYU1 374 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 THAP10Q9P2Z0 257 aaPredicted RBP7.89□□□□□ -1.15
USP40-203ENST00000427112 CYP8B1Q9UNU6 501 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 V9GY05 133 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 PLPP2O43688 288 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 NDUFB2O95178 105 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 GPR75O95800 540 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 CBX7O95931 251 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 ATP1B1P05026 303 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 SPINK2P20155 84 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 RPS11P62280 158 aaKnown RBP eCLIP7.89□□□□□ -1.15
USP40-203ENST00000427112 OR7A5Q15622 319 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 ZNHIT3Q15649 155 aaPredicted RBP7.89□□□□□ -1.15
USP40-203ENST00000427112 DMKNQ6E0U4 476 aaPredicted RBP7.89□□□□□ -1.15
USP40-203ENST00000427112 ARMC6Q6NXE6 501 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 FAM180AQ6UWF9 173 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 CHRDL2Q6WN34 429 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 GALNTL5Q7Z4T8 443 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 BATF2Q8N1L9 274 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 OR6M1Q8NGM8 313 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 TGM7Q96PF1 710 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 SCPEP1Q9HB40 452 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 RXFP3Q9NSD7 469 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 SDHAF2Q9NX18 166 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 IFITM5A6NNB3 132 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 SYT5O00445 386 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 TOR1AO14656 332 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 AGPAT2O15120 278 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 KLF4O43474 513 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 ARL6IP5O75915 188 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 AKR7A3O95154 331 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 HLA-DQB1P01920 261 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 TPOP07202 933 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 NUP62P37198 522 aaPredicted RBP7.88□□□□□ -1.15
USP40-203ENST00000427112 GPR85P60893 370 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 SKP1P63208 163 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 LTBQ06643 244 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 DLX2Q07687 328 aaPredicted RBP7.88□□□□□ -1.15
USP40-203ENST00000427112 SMCO1Q147U7 214 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 EIPR1Q53HC9 387 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 CCDC157Q569K6 752 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 SLC22A10Q63ZE4 541 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 OR52W1Q6IF63 320 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 SDR16C5Q8N3Y7 309 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 OR51A2Q8NGJ7 313 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 OR5AK2Q8NH90 309 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 MAFIPQ8WZ33 124 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 RBPMSQ93062 196 aaKnown RBP7.88□□□□□ -1.15
USP40-203ENST00000427112 TSLPQ969D9 159 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 ZNF75AQ96N20 296 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 MAP3K3Q99759 626 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 C7orf50Q9BRJ6 194 aaKnown RBP7.88□□□□□ -1.15
USP40-203ENST00000427112 RTN4RQ9BZR6 473 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 126.1 ms