RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 C20orf196Q8IYI0 205 aa16.6■□□□□ 0.25
CCDC28A-203ENST00000617445 MAPK1IP1LQ8NDC0 245 aa16.6■□□□□ 0.25
CCDC28A-203ENST00000617445 NELFAQ9H3P2 528 aa16.6■□□□□ 0.25
CCDC28A-203ENST00000617445 CA10Q9NS85 328 aa16.6■□□□□ 0.25
CCDC28A-203ENST00000617445 YLPM1P49750 1951 aaKnown RBP16.59■□□□□ 0.25
CCDC28A-203ENST00000617445 IGHV4-30-2A0A087WSY4 118 aa16.59■□□□□ 0.25
CCDC28A-203ENST00000617445 B9A039 149 aa16.59■□□□□ 0.25
CCDC28A-203ENST00000617445 PLPP3O14495 311 aa16.59■□□□□ 0.25
CCDC28A-203ENST00000617445 CECR9P0C854 216 aa16.59■□□□□ 0.25
CCDC28A-203ENST00000617445 CBLP22681 906 aa16.59■□□□□ 0.25
CCDC28A-203ENST00000617445 SNRPD2P62316 118 aaKnown RBP16.59■□□□□ 0.25
CCDC28A-203ENST00000617445 LOXL1Q08397 574 aaPredicted RBP16.59■□□□□ 0.25
CCDC28A-203ENST00000617445 MST1LQ2TV78 715 aa16.59■□□□□ 0.25
CCDC28A-203ENST00000617445 COQ5Q5HYK3 327 aa16.59■□□□□ 0.25
CCDC28A-203ENST00000617445 NHLRC1Q6VVB1 395 aa16.59■□□□□ 0.25
CCDC28A-203ENST00000617445 CCDC80Q76M96 950 aa16.59■□□□□ 0.25
CCDC28A-203ENST00000617445 C10orf53Q8N6V4 93 aa16.59■□□□□ 0.25
CCDC28A-203ENST00000617445 GPR32P1Q8NGA4 272 aa16.59■□□□□ 0.25
CCDC28A-203ENST00000617445 OR5J2Q8NH18 312 aa16.59■□□□□ 0.25
CCDC28A-203ENST00000617445 OR10A6Q8NH74 314 aa16.59■□□□□ 0.25
CCDC28A-203ENST00000617445 SLC26A7Q8TE54 656 aa16.59■□□□□ 0.25
CCDC28A-203ENST00000617445 FAM168AQ92567 244 aa16.59■□□□□ 0.25
CCDC28A-203ENST00000617445 PROX1Q92786 737 aa16.59■□□□□ 0.25
CCDC28A-203ENST00000617445 MPP4Q96JB8 637 aa16.59■□□□□ 0.25
CCDC28A-203ENST00000617445 WFDC6Q9BQY6 131 aa16.59■□□□□ 0.25
CCDC28A-203ENST00000617445 USP22Q9UPT9 525 aa16.59■□□□□ 0.25
CCDC28A-203ENST00000617445 ATRQ13535 2644 aa16.58■□□□□ 0.25
CCDC28A-203ENST00000617445 ZNF726A6NNF4 738 aa16.58■□□□□ 0.24
CCDC28A-203ENST00000617445 M0R3H8 397 aa16.58■□□□□ 0.24
CCDC28A-203ENST00000617445 HPRP00739 348 aa16.58■□□□□ 0.24
CCDC28A-203ENST00000617445 TROVE2P10155 538 aaKnown RBP eCLIP16.58■□□□□ 0.24
CCDC28A-203ENST00000617445 POU3F1Q03052 451 aaPredicted RBP16.58■□□□□ 0.24
CCDC28A-203ENST00000617445 SELPLGQ14242 412 aa16.58■□□□□ 0.24
CCDC28A-203ENST00000617445 EFNB3Q15768 340 aa16.58■□□□□ 0.24
CCDC28A-203ENST00000617445 VMACQ2NL98 169 aa16.58■□□□□ 0.24
CCDC28A-203ENST00000617445 TRMT5Q32P41 509 aaKnown RBP16.58■□□□□ 0.24
CCDC28A-203ENST00000617445 ENTPD8Q5MY95 495 aa16.58■□□□□ 0.24
CCDC28A-203ENST00000617445 ZNF627Q7L945 461 aa16.58■□□□□ 0.24
CCDC28A-203ENST00000617445 NUP37Q8NFH4 326 aa16.58■□□□□ 0.24
CCDC28A-203ENST00000617445 OR6T1Q8NGN1 323 aa16.58■□□□□ 0.24
CCDC28A-203ENST00000617445 FBXO17Q96EF6 278 aa16.58■□□□□ 0.24
CCDC28A-203ENST00000617445 MOGAT1Q96PD6 335 aa16.58■□□□□ 0.24
CCDC28A-203ENST00000617445 SLC19A3Q9BZV2 496 aa16.58■□□□□ 0.24
CCDC28A-203ENST00000617445 PCDHAC1Q9H158 963 aa16.58■□□□□ 0.24
CCDC28A-203ENST00000617445 DENND2DQ9H6A0 471 aaPredicted RBP16.58■□□□□ 0.24
CCDC28A-203ENST00000617445 FKBP7Q9Y680 259 aa16.58■□□□□ 0.24
CCDC28A-203ENST00000617445 SLC35F4A4IF30 521 aa16.57■□□□□ 0.24
CCDC28A-203ENST00000617445 TRAPPC13A5PLN9 417 aa16.57■□□□□ 0.24
CCDC28A-203ENST00000617445 M0R3G1 203 aa16.57■□□□□ 0.24
CCDC28A-203ENST00000617445 SASH3O75995 380 aa16.57■□□□□ 0.24
CCDC28A-203ENST00000617445 OR6A2O95222 327 aa16.57■□□□□ 0.24
CCDC28A-203ENST00000617445 OPN1SWP03999 348 aa16.57■□□□□ 0.24
CCDC28A-203ENST00000617445 AHCYP23526 432 aa16.57■□□□□ 0.24
CCDC28A-203ENST00000617445 TUBA1BP68363 451 aa16.57■□□□□ 0.24
CCDC28A-203ENST00000617445 TUBA4AP68366 448 aa16.57■□□□□ 0.24
CCDC28A-203ENST00000617445 NANOGP8Q6NSW7 305 aa16.57■□□□□ 0.24
CCDC28A-203ENST00000617445 TTC33Q6PID6 262 aaPredicted RBP16.57■□□□□ 0.24
CCDC28A-203ENST00000617445 TUBA1AQ71U36 451 aa16.57■□□□□ 0.24
CCDC28A-203ENST00000617445 PRIMA1Q86XR5 153 aa16.57■□□□□ 0.24
CCDC28A-203ENST00000617445 ZNF525Q8N782 197 aa16.57■□□□□ 0.24
CCDC28A-203ENST00000617445 OR8J3Q8NGG0 315 aa16.57■□□□□ 0.24
CCDC28A-203ENST00000617445 ADAMTS16Q8TE57 1224 aa16.57■□□□□ 0.24
CCDC28A-203ENST00000617445 ZNF837Q96EG3 531 aaPredicted RBP16.57■□□□□ 0.24
CCDC28A-203ENST00000617445 TNFRSF13CQ96RJ3 184 aa16.57■□□□□ 0.24
CCDC28A-203ENST00000617445 TMEM120AQ9BXJ8 343 aa16.57■□□□□ 0.24
CCDC28A-203ENST00000617445 ZNF442Q9H7R0 627 aa16.57■□□□□ 0.24
CCDC28A-203ENST00000617445 NANOGQ9H9S0 305 aa16.57■□□□□ 0.24
CCDC28A-203ENST00000617445 MYOZ1Q9NP98 299 aaPredicted RBP16.57■□□□□ 0.24
CCDC28A-203ENST00000617445 A0A096LNT2 108 aa16.56■□□□□ 0.24
CCDC28A-203ENST00000617445 BBIP1A8MTZ0 92 aa16.56■□□□□ 0.24
CCDC28A-203ENST00000617445 NDUFS8O00217 210 aa16.56■□□□□ 0.24
CCDC28A-203ENST00000617445 ENTPD5O75356 428 aa16.56■□□□□ 0.24
CCDC28A-203ENST00000617445 HLA-DOBP13765 273 aa16.56■□□□□ 0.24
CCDC28A-203ENST00000617445 CD247P20963 164 aa16.56■□□□□ 0.24
CCDC28A-203ENST00000617445 GZMMP51124 257 aa16.56■□□□□ 0.24
CCDC28A-203ENST00000617445 ZP4Q12836 540 aa16.56■□□□□ 0.24
CCDC28A-203ENST00000617445 MAPRE2Q15555 327 aa16.56■□□□□ 0.24
CCDC28A-203ENST00000617445 NPTX1Q15818 432 aa16.56■□□□□ 0.24
CCDC28A-203ENST00000617445 ADIPOQQ15848 244 aa16.56■□□□□ 0.24
CCDC28A-203ENST00000617445 OR6N1Q8NGY5 312 aa16.56■□□□□ 0.24
CCDC28A-203ENST00000617445 C10orf105Q8TEF2 133 aa16.56■□□□□ 0.24
CCDC28A-203ENST00000617445 TAMM41Q96BW9 452 aa16.56■□□□□ 0.24
CCDC28A-203ENST00000617445 LRRC58Q96CX6 371 aa16.56■□□□□ 0.24
CCDC28A-203ENST00000617445 ECSITQ9BQ95 431 aa16.56■□□□□ 0.24
CCDC28A-203ENST00000617445 EMC6Q9BV81 110 aa16.56■□□□□ 0.24
CCDC28A-203ENST00000617445 PLK3Q9H4B4 646 aa16.56■□□□□ 0.24
CCDC28A-203ENST00000617445 POFUT2Q9Y2G5 429 aa16.56■□□□□ 0.24
CCDC28A-203ENST00000617445 CPSF4LA6NMK7 179 aaKnown RBP16.55■□□□□ 0.24
CCDC28A-203ENST00000617445 FBP2O00757 339 aa16.55■□□□□ 0.24
CCDC28A-203ENST00000617445 IFNA14P01570 189 aa16.55■□□□□ 0.24
CCDC28A-203ENST00000617445 HIST1H2ABP04908 130 aa16.55■□□□□ 0.24
CCDC28A-203ENST00000617445 OR4A8P0C604 315 aa16.55■□□□□ 0.24
CCDC28A-203ENST00000617445 ADORA3P0DMS8 318 aa16.55■□□□□ 0.24
CCDC28A-203ENST00000617445 CALCRP30988 508 aa16.55■□□□□ 0.24
CCDC28A-203ENST00000617445 PDLIM4P50479 330 aa16.55■□□□□ 0.24
CCDC28A-203ENST00000617445 ARFIP2P53365 341 aa16.55■□□□□ 0.24
CCDC28A-203ENST00000617445 VLDLRP98155 873 aa16.55■□□□□ 0.24
CCDC28A-203ENST00000617445 ZNF74Q16587 644 aa16.55■□□□□ 0.24
CCDC28A-203ENST00000617445 MMEL1Q495T6 779 aa16.55■□□□□ 0.24
CCDC28A-203ENST00000617445 CARD17Q5XLA6 110 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms