RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 LAMP1P11279 417 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 TIA1P31483 386 aaKnown RBP eCLIP4.82□□□□□ -1.64
USP28-213ENST00000544967 RGRP47804 291 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 CTSCP53634 463 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 LIM2P55344 173 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 ARF3P61204 181 aaPredicted RBP4.82□□□□□ -1.64
USP28-213ENST00000544967 ARF1P84077 181 aaKnown RBP4.82□□□□□ -1.64
USP28-213ENST00000544967 DMWDQ09019 674 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 TSPAN31Q12999 210 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 SMCO1Q147U7 214 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 RBMS2Q15434 407 aaKnown RBP4.82□□□□□ -1.64
USP28-213ENST00000544967 VWA2Q5GFL6 755 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 OR2G6Q5TZ20 316 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 FAM46CQ5VWP2 391 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 OR5M10Q6IEU7 315 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 TCTN3Q6NUS6 607 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 NR2C2APQ86WQ0 139 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 PIANPQ8IYJ0 282 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 CLECL1Q8IZS7 167 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 MORN4Q8NDC4 146 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 OR2AK2Q8NG84 335 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 OR52J3Q8NH60 311 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 NFKBIDQ8NI38 313 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 THAP6Q8TBB0 222 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 BAHD1Q8TBE0 780 aaPredicted RBP4.82□□□□□ -1.64
USP28-213ENST00000544967 RXFP4Q8TDU9 374 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 OR8D1Q8WZ84 308 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 NKD1Q969G9 470 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 ESAMQ96AP7 390 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 ARRDC3Q96B67 414 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 PRRC1Q96M27 445 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 LRFN5Q96NI6 719 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 MS4A4EQ96PG1 132 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 DMRTA2Q96SC8 542 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 MFFQ9GZY8 342 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 ZNF768Q9H5H4 540 aaKnown RBP4.82□□□□□ -1.64
USP28-213ENST00000544967 NOX3Q9HBY0 568 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 SLC22A11Q9NSA0 550 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 TVP23BQ9NYZ1 205 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 PILRBQ9UKJ0 227 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 DMDP11532 3685 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 THADAQ6YHU6 1953 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 A0A1W2PRV1 198 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 ANTXRLA6NF34 631 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 ACOT7O00154 380 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 SYT5O00445 386 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 INSIG1O15503 277 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 OR10H3O60404 316 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 CPSF4O95639 269 aaKnown RBP4.82□□□□□ -1.64
USP28-213ENST00000544967 DIRAS3O95661 229 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 CALCBP10092 127 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 AOAHP28039 575 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 GPX4P36969 197 aaPredicted RBP4.82□□□□□ -1.64
USP28-213ENST00000544967 GCGRP47871 477 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 HTR5AP47898 357 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 RIDAP52758 137 aaKnown RBP4.82□□□□□ -1.64
USP28-213ENST00000544967 PRRX1P54821 245 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 CAV3P56539 151 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 DGCR2P98153 550 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 DEFA6Q01524 100 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 TNFRSF17Q02223 184 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 SLC3A1Q07837 685 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 ACSM2AQ08AH3 577 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 SERTAD2Q14140 314 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 ZNF239Q16600 458 aaKnown RBP4.82□□□□□ -1.64
USP28-213ENST00000544967 SFRP5Q5T4F7 317 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 TMEM244Q5VVB8 128 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 ACSM2BQ68CK6 577 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 SLC23A3Q6PIS1 610 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 NDUFAF7Q7L592 441 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 REC114Q7Z4M0 266 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 TECPR1Q7Z6L1 1165 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 TMPRSS11BQ86T26 416 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 KLBQ86Z14 1044 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 RASGEF1AQ8N9B8 481 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 PCNPQ8WW12 178 aaKnown RBP4.82□□□□□ -1.64
USP28-213ENST00000544967 LIPHQ8WWY8 451 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 NEURL3Q96EH8 262 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 WDR34Q96EX3 536 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 SAT2Q96F10 170 aaPredicted RBP4.82□□□□□ -1.64
USP28-213ENST00000544967 CNTNAP3BQ96NU0 1288 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 OR1F2PQ96R84 312 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 TEAD3Q99594 435 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 SLC35A5Q9BS91 424 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 ZDHHC4Q9NPG8 344 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 OBP2BQ9NPH6 170 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 SEMA4GQ9NTN9 838 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 NLGN3Q9NZ94 848 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 IL17CQ9P0M4 197 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 PTGFRNQ9P2B2 879 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 FBXL4Q9UKA2 621 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 TMEM184BQ9Y519 407 aaPredicted RBP4.82□□□□□ -1.64
USP28-213ENST00000544967 HS3ST3A1Q9Y663 406 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 SLC22A7Q9Y694 548 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 VCANP13611 3396 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 MYO9BQ13459 2157 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 KANTRA0A1W2PQU2 76 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 TBC1D3BA6NDS4 549 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 METTL12A8MUP2 240 aa4.82□□□□□ -1.64
USP28-213ENST00000544967 J3KTA2 159 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms