RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 ZNF417Q8TAU3 575 aa16.65■□□□□ 0.26
CCDC28A-203ENST00000617445 SLC41A3Q96GZ6 507 aa16.65■□□□□ 0.26
CCDC28A-203ENST00000617445 ALKBH3Q96Q83 286 aaPredicted RBP16.65■□□□□ 0.26
CCDC28A-203ENST00000617445 ZNF587Q96SQ5 575 aaPredicted RBP16.65■□□□□ 0.26
CCDC28A-203ENST00000617445 TMEM43Q9BTV4 400 aa16.65■□□□□ 0.26
CCDC28A-203ENST00000617445 KATNB1Q9BVA0 655 aa16.65■□□□□ 0.26
CCDC28A-203ENST00000617445 ZNF385DQ9H6B1 395 aa16.65■□□□□ 0.26
CCDC28A-203ENST00000617445 KLHL14Q9P2G3 628 aa16.65■□□□□ 0.26
CCDC28A-203ENST00000617445 CRNNQ9UBG3 495 aaPredicted RBP16.65■□□□□ 0.26
CCDC28A-203ENST00000617445 CRYAAP02489 173 aa16.64■□□□□ 0.25
CCDC28A-203ENST00000617445 PTNP21246 168 aa16.64■□□□□ 0.25
CCDC28A-203ENST00000617445 AQP1P29972 269 aa16.64■□□□□ 0.25
CCDC28A-203ENST00000617445 DMTNQ08495 405 aa16.64■□□□□ 0.25
CCDC28A-203ENST00000617445 ZNF613Q6PF04 617 aa16.64■□□□□ 0.25
CCDC28A-203ENST00000617445 CLEC2AQ6UVW9 174 aa16.64■□□□□ 0.25
CCDC28A-203ENST00000617445 LSRQ86X29 649 aaPredicted RBP16.64■□□□□ 0.25
CCDC28A-203ENST00000617445 PTOV1Q86YD1 416 aa16.64■□□□□ 0.25
CCDC28A-203ENST00000617445 GPR137CQ8N3F9 429 aa16.64■□□□□ 0.25
CCDC28A-203ENST00000617445 RNF217Q8TC41 542 aa16.64■□□□□ 0.25
CCDC28A-203ENST00000617445 ASPNQ9BXN1 380 aa16.64■□□□□ 0.25
CCDC28A-203ENST00000617445 NPHS2Q9NP85 383 aa16.64■□□□□ 0.25
CCDC28A-203ENST00000617445 MOKQ9UQ07 419 aa16.64■□□□□ 0.25
CCDC28A-203ENST00000617445 INAFM1C9JVW0 142 aa16.63■□□□□ 0.25
CCDC28A-203ENST00000617445 ATP6V1G2-DDX39BF2Z307 99 aa16.63■□□□□ 0.25
CCDC28A-203ENST00000617445 TLX2O43763 284 aaPredicted RBP16.63■□□□□ 0.25
CCDC28A-203ENST00000617445 VIMP08670 466 aaKnown RBP16.63■□□□□ 0.25
CCDC28A-203ENST00000617445 NQO1P15559 274 aaKnown RBP16.63■□□□□ 0.25
CCDC28A-203ENST00000617445 IL1RL1Q01638 556 aa16.63■□□□□ 0.25
CCDC28A-203ENST00000617445 LGALS3BPQ08380 585 aa16.63■□□□□ 0.25
CCDC28A-203ENST00000617445 INTS11Q5TA45 600 aaKnown RBP16.63■□□□□ 0.25
CCDC28A-203ENST00000617445 LINGO2Q7L985 606 aa16.63■□□□□ 0.25
CCDC28A-203ENST00000617445 PATL1Q86TB9 770 aaKnown RBP16.63■□□□□ 0.25
CCDC28A-203ENST00000617445 UEVLDQ8IX04 471 aa16.63■□□□□ 0.25
CCDC28A-203ENST00000617445 OR10H5Q8NGA6 315 aa16.63■□□□□ 0.25
CCDC28A-203ENST00000617445 LRR1Q96L50 414 aa16.63■□□□□ 0.25
CCDC28A-203ENST00000617445 PRR14Q9BWN1 585 aa16.63■□□□□ 0.25
CCDC28A-203ENST00000617445 KAT8Q9H7Z6 458 aaKnown RBP16.63■□□□□ 0.25
CCDC28A-203ENST00000617445 MRPL39Q9NYK5 338 aaKnown RBP16.63■□□□□ 0.25
CCDC28A-203ENST00000617445 FBXO9Q9UK97 447 aaPredicted RBP16.63■□□□□ 0.25
CCDC28A-203ENST00000617445 NOX1Q9Y5S8 564 aa16.63■□□□□ 0.25
CCDC28A-203ENST00000617445 CHD3Q12873 2000 aaKnown RBP16.62■□□□□ 0.25
CCDC28A-203ENST00000617445 IGHV1-18A0A0C4DH31 117 aa16.62■□□□□ 0.25
CCDC28A-203ENST00000617445 A0A0G2JND7 137 aa16.62■□□□□ 0.25
CCDC28A-203ENST00000617445 MS4A18H0YCH9 400 aa16.62■□□□□ 0.25
CCDC28A-203ENST00000617445 M0QX08 132 aa16.62■□□□□ 0.25
CCDC28A-203ENST00000617445 TPST2O60704 377 aa16.62■□□□□ 0.25
CCDC28A-203ENST00000617445 MT-ATP6P00846 226 aa16.62■□□□□ 0.25
CCDC28A-203ENST00000617445 IGLV1-44P01699 117 aa16.62■□□□□ 0.25
CCDC28A-203ENST00000617445 CSF3P09919 207 aa16.62■□□□□ 0.25
CCDC28A-203ENST00000617445 EFNA4P52798 201 aa16.62■□□□□ 0.25
CCDC28A-203ENST00000617445 CDH12P55289 794 aa16.62■□□□□ 0.25
CCDC28A-203ENST00000617445 KRTAP1-1Q07627 177 aa16.62■□□□□ 0.25
CCDC28A-203ENST00000617445 NFYCQ13952 458 aa16.62■□□□□ 0.25
CCDC28A-203ENST00000617445 MS4A18Q3C1V0 323 aa16.62■□□□□ 0.25
CCDC28A-203ENST00000617445 RETREG3Q86VR2 466 aa16.62■□□□□ 0.25
CCDC28A-203ENST00000617445 SNX32Q86XE0 403 aa16.62■□□□□ 0.25
CCDC28A-203ENST00000617445 OR4F15Q8NGB8 312 aa16.62■□□□□ 0.25
CCDC28A-203ENST00000617445 RASSF5Q8WWW0 418 aa16.62■□□□□ 0.25
CCDC28A-203ENST00000617445 THOC1Q96FV9 657 aaKnown RBP16.62■□□□□ 0.25
CCDC28A-203ENST00000617445 OR2M2Q96R28 347 aa16.62■□□□□ 0.25
CCDC28A-203ENST00000617445 MCHR1Q99705 422 aa16.62■□□□□ 0.25
CCDC28A-203ENST00000617445 ARHGDIGQ99819 225 aa16.62■□□□□ 0.25
CCDC28A-203ENST00000617445 SH3GL1Q99961 368 aa16.62■□□□□ 0.25
CCDC28A-203ENST00000617445 CRLF2Q9HC73 371 aa16.62■□□□□ 0.25
CCDC28A-203ENST00000617445 GPR35Q9HC97 309 aa16.62■□□□□ 0.25
CCDC28A-203ENST00000617445 SEC14L4Q9UDX3 406 aa16.62■□□□□ 0.25
CCDC28A-203ENST00000617445 VSTM5A8MXK1 200 aa16.61■□□□□ 0.25
CCDC28A-203ENST00000617445 TRAF3IP2O43734 574 aaPredicted RBP16.61■□□□□ 0.25
CCDC28A-203ENST00000617445 PDE5AO76074 875 aa16.61■□□□□ 0.25
CCDC28A-203ENST00000617445 IGKV3-15P01624 115 aa16.61■□□□□ 0.25
CCDC28A-203ENST00000617445 BGLAPP02818 100 aa16.61■□□□□ 0.25
CCDC28A-203ENST00000617445 CBR1P16152 277 aa16.61■□□□□ 0.25
CCDC28A-203ENST00000617445 SLC25A16P16260 332 aa16.61■□□□□ 0.25
CCDC28A-203ENST00000617445 MTPNP58546 118 aa16.61■□□□□ 0.25
CCDC28A-203ENST00000617445 ARF1P84077 181 aaKnown RBP16.61■□□□□ 0.25
CCDC28A-203ENST00000617445 CYLC2Q14093 348 aaPredicted RBP16.61■□□□□ 0.25
CCDC28A-203ENST00000617445 DUSP7Q16829 419 aa16.61■□□□□ 0.25
CCDC28A-203ENST00000617445 SWI5Q1ZZU3 235 aa16.61■□□□□ 0.25
CCDC28A-203ENST00000617445 LINC00114Q6XXX2 140 aa16.61■□□□□ 0.25
CCDC28A-203ENST00000617445 PXKQ7Z7A4 578 aa16.61■□□□□ 0.25
CCDC28A-203ENST00000617445 TMEM123Q8N131 208 aa16.61■□□□□ 0.25
CCDC28A-203ENST00000617445 SMYD1Q8NB12 490 aa16.61■□□□□ 0.25
CCDC28A-203ENST00000617445 IL17RDQ8NFM7 739 aa16.61■□□□□ 0.25
CCDC28A-203ENST00000617445 B3GAT2Q9NPZ5 323 aa16.61■□□□□ 0.25
CCDC28A-203ENST00000617445 RTTNQ86VV8 2226 aa16.6■□□□□ 0.25
CCDC28A-203ENST00000617445 A0A096LPE4 126 aa16.6■□□□□ 0.25
CCDC28A-203ENST00000617445 A0A1W2PPZ6 126 aa16.6■□□□□ 0.25
CCDC28A-203ENST00000617445 ZNF99A8MXY4 864 aaPredicted RBP16.6■□□□□ 0.25
CCDC28A-203ENST00000617445 CHP2O43745 196 aa16.6■□□□□ 0.25
CCDC28A-203ENST00000617445 CD5LO43866 347 aa16.6■□□□□ 0.25
CCDC28A-203ENST00000617445 CRLF1O75462 422 aa16.6■□□□□ 0.25
CCDC28A-203ENST00000617445 F12P00748 615 aaPredicted RBP16.6■□□□□ 0.25
CCDC28A-203ENST00000617445 NPPAP01160 153 aa16.6■□□□□ 0.25
CCDC28A-203ENST00000617445 PCGF2P35227 344 aa16.6■□□□□ 0.25
CCDC28A-203ENST00000617445 ARR3P36575 388 aa16.6■□□□□ 0.25
CCDC28A-203ENST00000617445 SERPINF1P36955 418 aa16.6■□□□□ 0.25
CCDC28A-203ENST00000617445 NAAAQ02083 359 aa16.6■□□□□ 0.25
CCDC28A-203ENST00000617445 PUDPQ08623 228 aa16.6■□□□□ 0.25
CCDC28A-203ENST00000617445 PMS2P3Q13401 168 aa16.6■□□□□ 0.25
CCDC28A-203ENST00000617445 CEACAM16Q2WEN9 425 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms