RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 OR1Q1Q15612 314 aa18.12■□□□□ 0.49
SDC1-205ENST00000447124 ALG10BQ5I7T1 473 aa18.12■□□□□ 0.49
SDC1-205ENST00000447124 PRIMA1Q86XR5 153 aa18.12■□□□□ 0.49
SDC1-205ENST00000447124 DEPDC4Q8N2C3 294 aa18.12■□□□□ 0.49
SDC1-205ENST00000447124 MUC15Q8N387 334 aa18.12■□□□□ 0.49
SDC1-205ENST00000447124 DPP10Q8N608 796 aa18.12■□□□□ 0.49
SDC1-205ENST00000447124 DNAJA4Q8WW22 397 aaPredicted RBP18.12■□□□□ 0.49
SDC1-205ENST00000447124 SLC38A4Q969I6 547 aa18.12■□□□□ 0.49
SDC1-205ENST00000447124 ANKRD27Q96NW4 1050 aa18.12■□□□□ 0.49
SDC1-205ENST00000447124 OXGR1Q96P68 337 aa18.12■□□□□ 0.49
SDC1-205ENST00000447124 ALKBH3Q96Q83 286 aaPredicted RBP18.12■□□□□ 0.49
SDC1-205ENST00000447124 LINC00470Q9BZP3 86 aa18.12■□□□□ 0.49
SDC1-205ENST00000447124 NELFAQ9H3P2 528 aa18.12■□□□□ 0.49
SDC1-205ENST00000447124 RABEP2Q9H5N1 569 aa18.12■□□□□ 0.49
SDC1-205ENST00000447124 LEF1Q9UJU2 399 aaPredicted RBP18.12■□□□□ 0.49
SDC1-205ENST00000447124 MS4A18H0YCH9 400 aa18.11■□□□□ 0.49
SDC1-205ENST00000447124 M0R082 166 aa18.11■□□□□ 0.49
SDC1-205ENST00000447124 OR2T1O43869 369 aa18.11■□□□□ 0.49
SDC1-205ENST00000447124 SSX4O60224 188 aa18.11■□□□□ 0.49
SDC1-205ENST00000447124 EDF1O60869 148 aaKnown RBP18.11■□□□□ 0.49
SDC1-205ENST00000447124 SASH3O75995 380 aa18.11■□□□□ 0.49
SDC1-205ENST00000447124 KRT33AO76009 404 aa18.11■□□□□ 0.49
SDC1-205ENST00000447124 ZNF43P17038 809 aa18.11■□□□□ 0.49
SDC1-205ENST00000447124 PCBP3P57721 371 aaKnown RBP18.11■□□□□ 0.49
SDC1-205ENST00000447124 MS4A18Q3C1V0 323 aa18.11■□□□□ 0.49
SDC1-205ENST00000447124 C1QTNF12Q5T7M4 302 aa18.11■□□□□ 0.49
SDC1-205ENST00000447124 ULK3Q6PHR2 472 aa18.11■□□□□ 0.49
SDC1-205ENST00000447124 NHLRC1Q6VVB1 395 aa18.11■□□□□ 0.49
SDC1-205ENST00000447124 NET1Q7Z628 596 aaPredicted RBP18.11■□□□□ 0.49
SDC1-205ENST00000447124 FBXL14Q8N1E6 418 aa18.11■□□□□ 0.49
SDC1-205ENST00000447124 HIPK4Q8NE63 616 aa18.11■□□□□ 0.49
SDC1-205ENST00000447124 ZNF417Q8TAU3 575 aa18.11■□□□□ 0.49
SDC1-205ENST00000447124 HTRA1Q92743 480 aa18.11■□□□□ 0.49
SDC1-205ENST00000447124 HS6ST2Q96MM7 605 aa18.11■□□□□ 0.49
SDC1-205ENST00000447124 ZNF607Q96SK3 696 aa18.11■□□□□ 0.49
SDC1-205ENST00000447124 ZNF587Q96SQ5 575 aaPredicted RBP18.11■□□□□ 0.49
SDC1-205ENST00000447124 KLHL14Q9P2G3 628 aa18.11■□□□□ 0.49
SDC1-205ENST00000447124 CORO2BQ9UQ03 480 aa18.11■□□□□ 0.49
SDC1-205ENST00000447124 MOKQ9UQ07 419 aa18.11■□□□□ 0.49
SDC1-205ENST00000447124 NDUFAF1Q9Y375 327 aa18.11■□□□□ 0.49
SDC1-205ENST00000447124 CR1P17927 2039 aa18.1■□□□□ 0.49
SDC1-205ENST00000447124 TRAV36DV7A0A075B6V5 113 aa18.1■□□□□ 0.49
SDC1-205ENST00000447124 A0A087WUJ7 227 aa18.1■□□□□ 0.49
SDC1-205ENST00000447124 A0A0B4J2E0 115 aa18.1■□□□□ 0.49
SDC1-205ENST00000447124 IGHV1-18A0A0C4DH31 117 aa18.1■□□□□ 0.49
SDC1-205ENST00000447124 A0A1B0GX12 115 aa18.1■□□□□ 0.49
SDC1-205ENST00000447124 ZNF587BE7ETH6 402 aa18.1■□□□□ 0.49
SDC1-205ENST00000447124 ATP6V1G2-DDX39BF2Z307 99 aa18.1■□□□□ 0.49
SDC1-205ENST00000447124 SERPINB7O75635 380 aa18.1■□□□□ 0.49
SDC1-205ENST00000447124 WNT11O96014 354 aa18.1■□□□□ 0.49
SDC1-205ENST00000447124 TUBA1BP68363 451 aa18.1■□□□□ 0.49
SDC1-205ENST00000447124 TUBA4AP68366 448 aa18.1■□□□□ 0.49
SDC1-205ENST00000447124 DUSP7Q16829 419 aa18.1■□□□□ 0.49
SDC1-205ENST00000447124 MST1LQ2TV78 715 aa18.1■□□□□ 0.49
SDC1-205ENST00000447124 FAM69AQ5T7M9 428 aa18.1■□□□□ 0.49
SDC1-205ENST00000447124 FAM91A1Q658Y4 838 aa18.1■□□□□ 0.49
SDC1-205ENST00000447124 ZNF544Q6NX49 715 aa18.1■□□□□ 0.49
SDC1-205ENST00000447124 TUBA1AQ71U36 451 aa18.1■□□□□ 0.49
SDC1-205ENST00000447124 H1FNTQ75WM6 255 aaPredicted RBP18.1■□□□□ 0.49
SDC1-205ENST00000447124 ABHD12BQ7Z5M8 362 aaPredicted RBP18.1■□□□□ 0.49
SDC1-205ENST00000447124 DHDDSQ86SQ9 333 aa18.1■□□□□ 0.49
SDC1-205ENST00000447124 ARMC8Q8IUR7 673 aa18.1■□□□□ 0.49
SDC1-205ENST00000447124 SMYD1Q8NB12 490 aa18.1■□□□□ 0.49
SDC1-205ENST00000447124 GPR32P1Q8NGA4 272 aa18.1■□□□□ 0.49
SDC1-205ENST00000447124 ZNF837Q96EG3 531 aaPredicted RBP18.1■□□□□ 0.49
SDC1-205ENST00000447124 SLC47A1Q96FL8 570 aa18.1■□□□□ 0.49
SDC1-205ENST00000447124 CGREF1Q99674 301 aa18.1■□□□□ 0.49
SDC1-205ENST00000447124 FKRPQ9H9S5 495 aa18.1■□□□□ 0.49
SDC1-205ENST00000447124 TMEM27Q9HBJ8 222 aa18.1■□□□□ 0.49
SDC1-205ENST00000447124 NPHS2Q9NP85 383 aa18.1■□□□□ 0.49
SDC1-205ENST00000447124 A0A096LPE4 126 aa18.09■□□□□ 0.49
SDC1-205ENST00000447124 LOC102725191A0A1B0GVB3 256 aa18.09■□□□□ 0.49
SDC1-205ENST00000447124 A0A1W2PPZ6 126 aa18.09■□□□□ 0.49
SDC1-205ENST00000447124 PRORSD1PA6NEY8 169 aa18.09■□□□□ 0.49
SDC1-205ENST00000447124 OR6C65A6NJZ3 312 aa18.09■□□□□ 0.49
SDC1-205ENST00000447124 M0QX08 132 aa18.09■□□□□ 0.49
SDC1-205ENST00000447124 AIM2O14862 343 aa18.09■□□□□ 0.49
SDC1-205ENST00000447124 HPRP00739 348 aa18.09■□□□□ 0.49
SDC1-205ENST00000447124 BGLAPP02818 100 aa18.09■□□□□ 0.49
SDC1-205ENST00000447124 HLA-DOBP13765 273 aa18.09■□□□□ 0.49
SDC1-205ENST00000447124 APOBEC3AP31941 199 aaPredicted RBP18.09■□□□□ 0.49
SDC1-205ENST00000447124 RGS8P57771 180 aaPredicted RBP18.09■□□□□ 0.49
SDC1-205ENST00000447124 MTPNP58546 118 aa18.09■□□□□ 0.49
SDC1-205ENST00000447124 ARF1P84077 181 aaKnown RBP18.09■□□□□ 0.49
SDC1-205ENST00000447124 ROR2Q01974 943 aaKnown RBP18.09■□□□□ 0.49
SDC1-205ENST00000447124 C5orf46Q6UWT4 87 aa18.09■□□□□ 0.49
SDC1-205ENST00000447124 OR10H5Q8NGA6 315 aa18.09■□□□□ 0.49
SDC1-205ENST00000447124 SLC41A3Q96GZ6 507 aa18.09■□□□□ 0.49
SDC1-205ENST00000447124 ADAD1Q96M93 576 aaKnown RBP18.09■□□□□ 0.49
SDC1-205ENST00000447124 BARX1Q9HBU1 254 aaPredicted RBP18.09■□□□□ 0.49
SDC1-205ENST00000447124 OBP2BQ9NPH6 170 aa18.09■□□□□ 0.49
SDC1-205ENST00000447124 TESQ9UGI8 421 aaKnown RBP18.09■□□□□ 0.49
SDC1-205ENST00000447124 RCE1Q9Y256 329 aa18.09■□□□□ 0.49
SDC1-205ENST00000447124 ARFGEF3Q5TH69 2177 aa18.08■□□□□ 0.49
SDC1-205ENST00000447124 IGHV4-30-2A0A087WSY4 118 aa18.08■□□□□ 0.48
SDC1-205ENST00000447124 RPL36A-HNRNPH2H7BZ11 118 aa18.08■□□□□ 0.48
SDC1-205ENST00000447124 M0R3H8 397 aa18.08■□□□□ 0.48
SDC1-205ENST00000447124 TRAF3IP2O43734 574 aaPredicted RBP18.08■□□□□ 0.48
SDC1-205ENST00000447124 GTF2E2P29084 291 aaKnown RBP18.08■□□□□ 0.48
SDC1-205ENST00000447124 GZMMP51124 257 aa18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms