RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 RSPO4Q2I0M5 234 aaPredicted RBP7.93□□□□□ -1.14
USP40-203ENST00000427112 PCGF3Q3KNV8 242 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 ELOA3BQ3SY89 546 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 GLRX5Q86SX6 157 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 ETFBKMTQ8IXQ9 262 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 ELOA3Q8NG57 546 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 DUSP19Q8WTR2 217 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 FGF11Q92914 225 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 AIFM2Q9BRQ8 373 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP7.93□□□□□ -1.14
USP40-203ENST00000427112 TCF7L1Q9HCS4 588 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 CGGBP1Q9UFW8 167 aaPredicted RBP7.93□□□□□ -1.14
USP40-203ENST00000427112 MOKQ9UQ07 419 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 PCDHGA5Q9Y5G8 931 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 CEP250Q9BV73 2442 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 ZDBF2Q9HCK1 2354 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 A0A0G2JK05 382 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 ARRDC5A6NEK1 342 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 CCDC85CA6NKD9 419 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 PIN1P1O15428 100 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 SLC19A2O60779 497 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 PPM1BO75688 479 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 CSTAP01040 98 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 ZNF35P13682 527 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 COL9A1P20849 921 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 ERVK-21P61565 698 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 SIRPAP78324 504 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 HTR4Q13639 388 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 ETFDHQ16134 617 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 GSG1Q2KHT4 349 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 ZNF782Q6ZMW2 699 aaPredicted RBP7.93□□□□□ -1.14
USP40-203ENST00000427112 TRILQ7L0X0 811 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 CD163Q86VB7 1156 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 FOXRED2Q8IWF2 684 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 C7orf61Q8IZ16 206 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 STPG2Q8N412 459 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 DUSP18Q8NEJ0 188 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 GPR119Q8TDV5 335 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 CASTOR1Q8WTX7 329 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 COX14Q96I36 57 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 ASB16Q96NS5 453 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 MOGAT1Q96PD6 335 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 RBP7Q96R05 134 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 DLL4Q9NR61 685 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 CDV3Q9UKY7 258 aaKnown RBP7.93□□□□□ -1.14
USP40-203ENST00000427112 FITM1A5D6W6 292 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 ANXA2P2A6NMY6 339 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 SGCEO43556 437 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 RCBTB2O95199 551 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 KLF8O95600 359 aaPredicted RBP7.93□□□□□ -1.14
USP40-203ENST00000427112 ANXA2P07355 339 aaKnown RBP7.93□□□□□ -1.14
USP40-203ENST00000427112 ACHEP22303 614 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 MNX1P50219 401 aaPredicted RBP7.93□□□□□ -1.14
USP40-203ENST00000427112 SORDQ00796 357 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 PLAURQ03405 335 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 ELOAQ14241 798 aaKnown RBP7.93□□□□□ -1.14
USP40-203ENST00000427112 ZIC1Q15915 447 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 GAB4Q2WGN9 574 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 DCAF12L2Q5VW00 463 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 CDCP2Q5VXM1 449 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 RTL4Q6ZR62 310 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 MARCH3Q86UD3 253 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 LIX1LQ8IVB5 337 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 ZNF563Q8TA94 476 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 ACOT12Q8WYK0 555 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 NXPE2Q96DL1 559 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 ADAT1Q9BUB4 502 aaKnown RBP7.93□□□□□ -1.14
USP40-203ENST00000427112 TMEM106CQ9BVX2 250 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 ACTR6Q9GZN1 396 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 GHITMQ9H3K2 345 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 HRASLSQ9HDD0 168 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 C14orf105Q9NVL8 296 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 CYB5R1Q9UHQ9 305 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 DAPP1Q9UN19 280 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 FANCMQ8IYD8 2048 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 TRAV8-7A0A075B6U6 113 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 LINC01553A4QN01 128 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 PYCARD-AS1I3L0S3 204 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 TIMP1P01033 207 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 SRMP19623 302 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 CCKBRP32239 447 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 PRSS12P56730 875 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 CTXN1P60606 82 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 UBXN2BQ14CS0 331 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 TTLL10Q6ZVT0 673 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 RTN4RL2Q86UN3 420 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 ZNF619Q8N2I2 560 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 PGLYRP3Q96LB9 341 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 AMELYQ99218 206 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 B3GNT4Q9C0J1 378 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 PCBD2Q9H0N5 130 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 SYT4Q9H2B2 425 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 BCL2L10Q9HD36 194 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 NTMQ9P121 344 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 ACSL5Q9ULC5 683 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 AP1M2Q9Y6Q5 423 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 A0A1W2PPL8 197 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 SLC22A31A6NKX4 558 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 HOXB2P14652 356 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 OR1D4P47884 311 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms