RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 BBS1Q8NFJ9 593 aa16.73■□□□□ 0.27
CLN3-206ENST00000360019 FN3KQ9H479 309 aa16.73■□□□□ 0.27
CLN3-206ENST00000360019 ERVK-18Q9QC07 812 aa16.73■□□□□ 0.27
CLN3-206ENST00000360019 B4GALT7Q9UBV7 327 aa16.73■□□□□ 0.27
CLN3-206ENST00000360019 HDGFL3Q9Y3E1 203 aa16.73■□□□□ 0.27
CLN3-206ENST00000360019 CACNA1AO00555 2505 aa16.72■□□□□ 0.27
CLN3-206ENST00000360019 FAM166BA8MTA8 275 aa16.72■□□□□ 0.27
CLN3-206ENST00000360019 HPNP05981 417 aa16.72■□□□□ 0.27
CLN3-206ENST00000360019 CELA3AP09093 270 aa16.72■□□□□ 0.27
CLN3-206ENST00000360019 MAGEA5P43359 124 aa16.72■□□□□ 0.27
CLN3-206ENST00000360019 SLC15A1P46059 708 aa16.72■□□□□ 0.27
CLN3-206ENST00000360019 RAC1P63000 192 aa16.72■□□□□ 0.27
CLN3-206ENST00000360019 TUBA4AP68366 448 aa16.72■□□□□ 0.27
CLN3-206ENST00000360019 TLE3Q04726 772 aa16.72■□□□□ 0.27
CLN3-206ENST00000360019 DBPQ10586 325 aaPredicted RBP16.72■□□□□ 0.27
CLN3-206ENST00000360019 CRMP1Q14194 572 aa16.72■□□□□ 0.27
CLN3-206ENST00000360019 PNPLA5Q7Z6Z6 429 aaPredicted RBP16.72■□□□□ 0.27
CLN3-206ENST00000360019 CPOQ8IVL8 374 aa16.72■□□□□ 0.27
CLN3-206ENST00000360019 TMEM251Q8N6I4 163 aa16.72■□□□□ 0.27
CLN3-206ENST00000360019 SCAIQ8N9R8 606 aa16.72■□□□□ 0.27
CLN3-206ENST00000360019 TMEM178AQ8NBL3 297 aa16.72■□□□□ 0.27
CLN3-206ENST00000360019 Q96M85 177 aa16.72■□□□□ 0.27
CLN3-206ENST00000360019 DCBLD2Q96PD2 775 aa16.72■□□□□ 0.27
CLN3-206ENST00000360019 TSPAN32Q96QS1 320 aa16.72■□□□□ 0.27
CLN3-206ENST00000360019 HCAR1Q9BXC0 346 aa16.72■□□□□ 0.27
CLN3-206ENST00000360019 TEX13CA0A0J9YWL9 993 aa16.71■□□□□ 0.27
CLN3-206ENST00000360019 RIIAD1A6NNX1 92 aa16.71■□□□□ 0.27
CLN3-206ENST00000360019 C11orf98E9PRG8 122 aa16.71■□□□□ 0.27
CLN3-206ENST00000360019 PRODHO43272 600 aa16.71■□□□□ 0.27
CLN3-206ENST00000360019 APEHP13798 732 aaKnown RBP16.71■□□□□ 0.27
CLN3-206ENST00000360019 AHCYP23526 432 aa16.71■□□□□ 0.27
CLN3-206ENST00000360019 GTF2E2P29084 291 aaKnown RBP16.71■□□□□ 0.27
CLN3-206ENST00000360019 ZNF91Q05481 1191 aa16.71■□□□□ 0.27
CLN3-206ENST00000360019 ITGADQ13349 1161 aa16.71■□□□□ 0.27
CLN3-206ENST00000360019 HYAL4Q2M3T9 481 aa16.71■□□□□ 0.27
CLN3-206ENST00000360019 PLBD1Q6P4A8 553 aa16.71■□□□□ 0.27
CLN3-206ENST00000360019 H1FNTQ75WM6 255 aaPredicted RBP16.71■□□□□ 0.27
CLN3-206ENST00000360019 CXXC5Q7LFL8 322 aaKnown RBP16.71■□□□□ 0.27
CLN3-206ENST00000360019 SDR9C7Q8NEX9 313 aa16.71■□□□□ 0.27
CLN3-206ENST00000360019 OR52E2Q8NGJ4 325 aa16.71■□□□□ 0.27
CLN3-206ENST00000360019 OR4K13Q8NH42 304 aa16.71■□□□□ 0.27
CLN3-206ENST00000360019 IPCEF1Q8WWN9 437 aaPredicted RBP16.71■□□□□ 0.27
CLN3-206ENST00000360019 SMPDL3BQ92485 455 aa16.71■□□□□ 0.27
CLN3-206ENST00000360019 MIB2Q96AX9 1013 aa16.71■□□□□ 0.27
CLN3-206ENST00000360019 RASD2Q96D21 266 aa16.71■□□□□ 0.27
CLN3-206ENST00000360019 SFXN2Q96NB2 322 aa16.71■□□□□ 0.27
CLN3-206ENST00000360019 SIGLEC11Q96RL6 698 aa16.71■□□□□ 0.27
CLN3-206ENST00000360019 MED20Q9H944 212 aa16.71■□□□□ 0.27
CLN3-206ENST00000360019 SLC6A5Q9Y345 797 aa16.71■□□□□ 0.27
CLN3-206ENST00000360019 PRRC2CQ9Y520 2896 aaKnown RBP16.71■□□□□ 0.27
CLN3-206ENST00000360019 CACNA1GO43497 2377 aa16.7■□□□□ 0.26
CLN3-206ENST00000360019 MS4A18H0YCH9 400 aa16.7■□□□□ 0.26
CLN3-206ENST00000360019 RNF13O43567 381 aa16.7■□□□□ 0.26
CLN3-206ENST00000360019 IDH3BO43837 385 aa16.7■□□□□ 0.26
CLN3-206ENST00000360019 AKR7A3O95154 331 aa16.7■□□□□ 0.26
CLN3-206ENST00000360019 DBTP11182 482 aaKnown RBP16.7■□□□□ 0.26
CLN3-206ENST00000360019 DIO1P49895 249 aa16.7■□□□□ 0.26
CLN3-206ENST00000360019 GFRA1P56159 465 aa16.7■□□□□ 0.26
CLN3-206ENST00000360019 PLGLB1Q02325 96 aa16.7■□□□□ 0.26
CLN3-206ENST00000360019 MVKQ03426 396 aa16.7■□□□□ 0.26
CLN3-206ENST00000360019 PUDPQ08623 228 aa16.7■□□□□ 0.26
CLN3-206ENST00000360019 MS4A18Q3C1V0 323 aa16.7■□□□□ 0.26
CLN3-206ENST00000360019 NXNL2Q5VZ03 156 aa16.7■□□□□ 0.26
CLN3-206ENST00000360019 TMPPEQ6ZT21 453 aa16.7■□□□□ 0.26
CLN3-206ENST00000360019 SPARTQ8N0X7 666 aa16.7■□□□□ 0.26
CLN3-206ENST00000360019 KDM8Q8N371 416 aa16.7■□□□□ 0.26
CLN3-206ENST00000360019 CYB561A3Q8NBI2 242 aa16.7■□□□□ 0.26
CLN3-206ENST00000360019 SLC37A3Q8NCC5 494 aa16.7■□□□□ 0.26
CLN3-206ENST00000360019 LSM14AQ8ND56 463 aaKnown RBP16.7■□□□□ 0.26
CLN3-206ENST00000360019 PTP4A1Q93096 173 aa16.7■□□□□ 0.26
CLN3-206ENST00000360019 COPS4Q9BT78 406 aa16.7■□□□□ 0.26
CLN3-206ENST00000360019 CHST11Q9NPF2 352 aa16.7■□□□□ 0.26
CLN3-206ENST00000360019 ALPK2Q86TB3 2170 aa16.7■□□□□ 0.26
CLN3-206ENST00000360019 H0YC42 278 aa16.7■□□□□ 0.26
CLN3-206ENST00000360019 SERPINI2O75830 405 aa16.7■□□□□ 0.26
CLN3-206ENST00000360019 OR6A2O95222 327 aa16.7■□□□□ 0.26
CLN3-206ENST00000360019 TXNDC12O95881 172 aa16.7■□□□□ 0.26
CLN3-206ENST00000360019 PLGP00747 810 aaPredicted RBP16.7■□□□□ 0.26
CLN3-206ENST00000360019 IFNGP01579 166 aa16.7■□□□□ 0.26
CLN3-206ENST00000360019 HLA-DOBP13765 273 aa16.7■□□□□ 0.26
CLN3-206ENST00000360019 ZNF3P17036 446 aa16.7■□□□□ 0.26
CLN3-206ENST00000360019 SDHAP31040 664 aa16.7■□□□□ 0.26
CLN3-206ENST00000360019 P2RY4P51582 365 aa16.7■□□□□ 0.26
CLN3-206ENST00000360019 OR2B6P58173 313 aa16.7■□□□□ 0.26
CLN3-206ENST00000360019 KHDRBS1Q07666 443 aaKnown RBP eCLIP16.7■□□□□ 0.26
CLN3-206ENST00000360019 ZP4Q12836 540 aa16.7■□□□□ 0.26
CLN3-206ENST00000360019 FAM122AQ96E09 287 aa16.7■□□□□ 0.26
CLN3-206ENST00000360019 DTNBP1Q96EV8 351 aa16.7■□□□□ 0.26
CLN3-206ENST00000360019 NDEL1Q9GZM8 345 aa16.7■□□□□ 0.26
CLN3-206ENST00000360019 INIPQ9NRY2 104 aa16.7■□□□□ 0.26
CLN3-206ENST00000360019 KLHL21Q9UJP4 597 aa16.7■□□□□ 0.26
CLN3-206ENST00000360019 TRAPPC4Q9Y296 219 aa16.7■□□□□ 0.26
CLN3-206ENST00000360019 B3GALT5Q9Y2C3 310 aa16.7■□□□□ 0.26
CLN3-206ENST00000360019 RPL36Q9Y3U8 105 aaKnown RBP16.7■□□□□ 0.26
CLN3-206ENST00000360019 A0A0J9YW62 118 aa16.69■□□□□ 0.26
CLN3-206ENST00000360019 IMPA2O14732 288 aa16.69■□□□□ 0.26
CLN3-206ENST00000360019 RRP8O43159 456 aaKnown RBP16.69■□□□□ 0.26
CLN3-206ENST00000360019 RGS10O43665 173 aa16.69■□□□□ 0.26
CLN3-206ENST00000360019 PMS2P2O95744 297 aa16.69■□□□□ 0.26
CLN3-206ENST00000360019 ADRA2AP08913 450 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 96.4 ms