RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 C19orf67A6NJJ6 358 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 IFNA17P01571 189 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 KCNJ10P78508 379 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 BTG2P78543 158 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 GLYR1Q49A26 553 aaPredicted RBP8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 GABRG1Q8N1C3 465 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 SVOPLQ8N434 492 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 D2HGDHQ8N465 521 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 DDX51Q8N8A6 666 aaKnown RBP eCLIP8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 ZBTB8BQ8NAP8 495 aaPredicted RBP8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 OR5D16Q8NGK9 328 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 SLC35B2Q8TB61 432 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 AGAP11Q8TF27 550 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 ZFP3Q96NJ6 502 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 OR7D2Q96RA2 312 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 SYT3Q9BQG1 590 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 REPIN1Q9BWE0 567 aaKnown RBP8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 TEX101Q9BY14 249 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 CCM2LQ9NUG4 571 aaPredicted RBP8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 TCRBV7S3A2A0A539 114 aa8.46□□□□□ -1.05
LIMCH1-202ENST00000381753 FRKP42685 505 aaPredicted RBP8.46□□□□□ -1.05
LIMCH1-202ENST00000381753 MAGEA5P43359 124 aa8.46□□□□□ -1.05
LIMCH1-202ENST00000381753 ATP6AP1Q15904 470 aa8.46□□□□□ -1.05
LIMCH1-202ENST00000381753 PLXDC2Q6UX71 529 aa8.46□□□□□ -1.05
LIMCH1-202ENST00000381753 ZNF782Q6ZMW2 699 aaPredicted RBP8.46□□□□□ -1.05
LIMCH1-202ENST00000381753 TMEM151AQ8N4L1 468 aa8.46□□□□□ -1.05
LIMCH1-202ENST00000381753 SPICQ8N5J4 248 aa8.46□□□□□ -1.05
LIMCH1-202ENST00000381753 PCDHA9Q9Y5H5 950 aa8.46□□□□□ -1.05
LIMCH1-202ENST00000381753 TIMM10BQ9Y5J6 103 aa8.46□□□□□ -1.05
LIMCH1-202ENST00000381753 TNKS1BP1Q9C0C2 1729 aaKnown RBP8.46□□□□□ -1.05
LIMCH1-202ENST00000381753 MROH6A6NGR9 719 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 DISC1C4P0D8 188 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 ACOT8O14734 319 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 SHBGP04278 402 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 AKR1C4P17516 323 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 ATF4P18848 351 aaPredicted RBP8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 MAP2K3P46734 347 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 RAC1P63000 192 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 PITPNAQ00169 270 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 FAM53BQ14153 422 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 AHSA2Q719I0 299 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 ANKRD37Q7Z713 158 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 WDTC1Q8N5D0 677 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 GPR150Q8NGU9 434 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 FAM46BQ96A09 425 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 RSPRY1Q96DX4 576 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 ATG5Q9H1Y0 275 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 EVA1AQ9H8M9 152 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 FBXO8Q9NRD0 319 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 TMEM100Q9NV29 134 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 ERVK13-1Q9NX77 482 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 ETAA1Q9NY74 926 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 MALT1Q9UDY8 824 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 CORINQ9Y5Q5 1042 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 APC2O95996 2303 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 NRAPQ86VF7 1730 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 MCRIP1C9JLW8 97 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 PLOD2O00469 737 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 XRCC2O43543 280 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 SLC19A2O60779 497 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 CLDN14O95500 239 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 PNLIPP16233 465 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 ADH6P28332 368 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 RBMXP38159 391 aaKnown RBP8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 ART1P52961 327 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 BEX5Q5H9J7 111 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 ACSM5Q6NUN0 579 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 NRMQ8IXM6 262 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 CARFQ8N187 725 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 PCGF1Q9BSM1 259 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 MS4A5Q9H3V2 200 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 APMAPQ9HDC9 416 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 HINT3Q9NQE9 182 aaKnown RBP8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 MSRB2Q9Y3D2 182 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 NUP98P52948 1817 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 C1QTNF9BB2RNN3 333 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 GPR39O43194 453 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 SGCEO43556 437 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 EIF4E2O60573 245 aaKnown RBP8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 C1QTNF9P0C862 333 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 PBX1P40424 430 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 ZNF140P52738 457 aaPredicted RBP8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 SLC35B1P78383 322 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 SQSTM1Q13501 440 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 GRINAQ7Z429 371 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 ZDHHC19Q8WVZ1 309 aaPredicted RBP8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 RPEQ96AT9 228 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 RNF170Q96K19 258 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 TMED9Q9BVK6 235 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 PPIL1Q9Y3C6 166 aa8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 TIMM8BQ9Y5J9 83 aaPredicted RBP8.46□□□□□ -1.06
LIMCH1-202ENST00000381753 GABARAPH6UMI1 98 aa8.45□□□□□ -1.06
LIMCH1-202ENST00000381753 ZNF195O14628 629 aa8.45□□□□□ -1.06
LIMCH1-202ENST00000381753 TPPPO94811 219 aa8.45□□□□□ -1.06
LIMCH1-202ENST00000381753 GABARAPO95166 117 aa8.45□□□□□ -1.06
LIMCH1-202ENST00000381753 CTSLP07711 333 aa8.45□□□□□ -1.06
LIMCH1-202ENST00000381753 CELA2BP08218 269 aaPredicted RBP8.45□□□□□ -1.06
LIMCH1-202ENST00000381753 PRKACBP22694 351 aa8.45□□□□□ -1.06
LIMCH1-202ENST00000381753 C18orf63Q68DL7 685 aa8.45□□□□□ -1.06
LIMCH1-202ENST00000381753 HAGHLQ6PII5 290 aaPredicted RBP8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms