RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 LGALS4P56470 323 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 ARF3P61204 181 aaPredicted RBP7.28□□□□□ -1.24
VPS13D-211ENST00000543710 ARF1P84077 181 aaKnown RBP7.28□□□□□ -1.24
VPS13D-211ENST00000543710 CATR1Q13166 79 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 ASAH1Q13510 395 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 RUNX2Q13950 521 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 FAM122CQ6P4D5 195 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 GLIS1Q8NBF1 620 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 SCARB1Q8WTV0 552 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 TMEM171Q8WVE6 324 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 ZNF419Q96HQ0 510 aaPredicted RBP7.28□□□□□ -1.24
VPS13D-211ENST00000543710 OR8D2Q9GZM6 311 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 NOX3Q9HBY0 568 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 FAM212BQ9NTI7 297 aaPredicted RBP7.28□□□□□ -1.24
VPS13D-211ENST00000543710 ZNF701Q9NV72 531 aaPredicted RBP7.28□□□□□ -1.24
VPS13D-211ENST00000543710 ACTR10Q9NZ32 417 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 IL17CQ9P0M4 197 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 HHLA2Q9UM44 414 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 MYH7BA7E2Y1 1941 aa7.28□□□□□ -1.24
VPS13D-211ENST00000543710 TRAV36DV7A0A075B6V5 113 aa7.27□□□□□ -1.24
VPS13D-211ENST00000543710 TMEM129A0AVI4 362 aa7.27□□□□□ -1.24
VPS13D-211ENST00000543710 PIAS1O75925 651 aa7.27□□□□□ -1.24
VPS13D-211ENST00000543710 SLC22A5O76082 557 aa7.27□□□□□ -1.24
VPS13D-211ENST00000543710 PPP1R3DO95685 299 aa7.27□□□□□ -1.24
VPS13D-211ENST00000543710 ELK1P19419 428 aa7.27□□□□□ -1.24
VPS13D-211ENST00000543710 DTYMKP23919 212 aa7.27□□□□□ -1.24
VPS13D-211ENST00000543710 GCAP28676 217 aa7.27□□□□□ -1.24
VPS13D-211ENST00000543710 LCN6P62502 163 aa7.27□□□□□ -1.24
VPS13D-211ENST00000543710 C11orf91Q3C1V1 193 aa7.27□□□□□ -1.24
VPS13D-211ENST00000543710 DPPA2Q7Z7J5 298 aa7.27□□□□□ -1.24
VPS13D-211ENST00000543710 OR8S1Q8NH09 359 aa7.27□□□□□ -1.24
VPS13D-211ENST00000543710 NEURL3Q96EH8 262 aa7.27□□□□□ -1.24
VPS13D-211ENST00000543710 OR7D2Q96RA2 312 aa7.27□□□□□ -1.24
VPS13D-211ENST00000543710 SLC25A21Q9BQT8 299 aaPredicted RBP7.27□□□□□ -1.24
VPS13D-211ENST00000543710 R3HDMLQ9H3Y0 253 aa7.27□□□□□ -1.24
VPS13D-211ENST00000543710 FBXO8Q9NRD0 319 aa7.27□□□□□ -1.24
VPS13D-211ENST00000543710 RAB22AQ9UL26 194 aa7.27□□□□□ -1.24
VPS13D-211ENST00000543710 A0A0D9SEW6 157 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 GALR3O60755 368 aaPredicted RBP7.27□□□□□ -1.25
VPS13D-211ENST00000543710 ZNF780AO75290 641 aaPredicted RBP7.27□□□□□ -1.25
VPS13D-211ENST00000543710 HTR3BO95264 441 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 RPS2P15880 293 aaKnown RBP7.27□□□□□ -1.25
VPS13D-211ENST00000543710 SDC1P18827 310 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 PRKACGP22612 351 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 OPRL1P41146 370 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 SLC1A3P43003 542 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 LSSP48449 732 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 ETV1P50549 477 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 UNQ6494/PRO21346Q6UXR6 183 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 SIAH1Q8IUQ4 282 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 DTWD1Q8N5C7 304 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 FAM110BQ8TC76 370 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 ASB11Q8WXH4 323 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 ZBTB8AQ96BR9 441 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 ATOH8Q96SQ7 321 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 SLC6A7Q99884 636 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 WDR76Q9H967 626 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 GSKIPQ9P0R6 139 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 DOCK1Q14185 1865 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 MEIOCA2RUB1 952 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 HHLA1C9JL84 531 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 F8W036 122 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 GABRPO00591 440 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 ZNF254O75437 659 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 ZFAND5O76080 213 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 THBS1P07996 1170 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 HIST1H1TP22492 207 aaPredicted RBP7.27□□□□□ -1.25
VPS13D-211ENST00000543710 IL3RAP26951 378 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 GABRB3P28472 473 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 MC2RQ01718 297 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 CFHR1Q03591 330 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 PCK2Q16822 640 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 ZNF585AQ6P3V2 769 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 NRMQ8IXM6 262 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 OR51A7Q8NH64 312 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 OR1S1Q8NH92 325 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 SLC35B4Q969S0 331 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 ANKRD9Q96BM1 317 aaPredicted RBP7.27□□□□□ -1.25
VPS13D-211ENST00000543710 SEC22CQ9BRL7 303 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 SEMA6CQ9H3T2 930 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 ZNF395Q9H8N7 513 aaPredicted RBP7.27□□□□□ -1.25
VPS13D-211ENST00000543710 SLC6A20Q9NP91 592 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 SPHK1Q9NYA1 384 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 COL18A1P39060 1754 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 CD300LBA8K4G0 201 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 C9JVG2 144 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 PRSS44E7EML9 344 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 ADAM12O43184 909 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 EIF1BO60739 113 aaKnown RBP7.27□□□□□ -1.25
VPS13D-211ENST00000543710 DFFBO76075 338 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 T-ENOLP0DO92 83 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 CPMP14384 443 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 MAGP20916 626 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 CALCRP30988 508 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 CAV3P56539 151 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 ERV3-1Q14264 604 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 ZNF266Q14584 549 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 FAM69BQ5VUD6 431 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 CGB2Q6NT52 195 aa7.27□□□□□ -1.25
VPS13D-211ENST00000543710 PLBD1Q6P4A8 553 aa7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms