RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 C2orf68Q2NKX9 166 aa7.96□□□□□ -1.14
USP40-203ENST00000427112 ZNF658BQ4V348 819 aaPredicted RBP7.96□□□□□ -1.14
USP40-203ENST00000427112 FCRL6Q6DN72 434 aa7.96□□□□□ -1.14
USP40-203ENST00000427112 LEG1Q6P5S2 330 aa7.96□□□□□ -1.14
USP40-203ENST00000427112 TEX261Q6UWH6 196 aa7.96□□□□□ -1.14
USP40-203ENST00000427112 NRSN1Q8IZ57 195 aa7.96□□□□□ -1.14
USP40-203ENST00000427112 OR6N2Q8NGY6 317 aa7.96□□□□□ -1.14
USP40-203ENST00000427112 OR4C3Q8NH37 302 aa7.96□□□□□ -1.14
USP40-203ENST00000427112 SYNPRQ8TBG9 265 aa7.96□□□□□ -1.14
USP40-203ENST00000427112 CREB3L1Q96BA8 519 aa7.96□□□□□ -1.14
USP40-203ENST00000427112 WDR34Q96EX3 536 aa7.96□□□□□ -1.14
USP40-203ENST00000427112 PELI1Q96FA3 418 aa7.96□□□□□ -1.14
USP40-203ENST00000427112 C1QTNF2Q9BXJ5 285 aa7.96□□□□□ -1.14
USP40-203ENST00000427112 MCOLN1Q9GZU1 580 aa7.96□□□□□ -1.14
USP40-203ENST00000427112 LIN7BQ9HAP6 207 aa7.96□□□□□ -1.14
USP40-203ENST00000427112 GPR34Q9UPC5 381 aa7.96□□□□□ -1.14
USP40-203ENST00000427112 U3KQ87 197 aa7.96□□□□□ -1.14
USP40-203ENST00000427112 LINC01565O15544 149 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 B3GALT2O43825 422 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 DRD2P14416 443 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 ZNF3P17036 446 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 FPR3P25089 353 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 NDUFS1P28331 727 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 SLC6A1P30531 599 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 PTH2RP49190 550 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 GPR18Q14330 331 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 NDUFA9Q16795 377 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 MEP1BQ16820 701 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 SLC36A2Q495M3 483 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 SCGB2B2Q4G0G5 96 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 HSD17B12Q53GQ0 312 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 TCTE1Q5JU00 501 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 C1QL3Q5VWW1 255 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 TAF8Q7Z7C8 310 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 LNX2Q8N448 690 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 AVL9Q8NBF6 648 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 POGLUT1Q8NBL1 392 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 OR56B4Q8NH76 319 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 FAM46BQ96A09 425 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 HYLS1Q96M11 299 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 GDF15Q99988 308 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 ZNF649Q9BS31 505 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 ERVMER34-1Q9H9K5 563 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 PCDHGB7Q9Y5F8 929 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 CACNA1GO43497 2377 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 PCNX3Q9H6A9 2034 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 GIMAP1-GIMAP5A0A087WTJ2 511 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 A0A1B0GVI7 797 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 DCTN6O00399 190 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 STK25O00506 426 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 SLC9A3R1O14745 358 aaPredicted RBP7.95□□□□□ -1.14
USP40-203ENST00000427112 SLC43A1O75387 559 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 WISP1O95388 367 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 HMGN1P05114 100 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 STAT5AP42229 794 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 NANOS3P60323 173 aaKnown RBP7.95□□□□□ -1.14
USP40-203ENST00000427112 PSMA6P60900 246 aaKnown RBP7.95□□□□□ -1.14
USP40-203ENST00000427112 KIRREL2Q6UWL6 708 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 MAMSTRQ6ZN01 415 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 C16orf47Q6ZP98 133 aaPredicted RBP7.95□□□□□ -1.14
USP40-203ENST00000427112 NLRC3Q7RTR2 1065 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 TMEM151BQ8IW70 566 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 FAM160A2Q8N612 972 aaPredicted RBP7.95□□□□□ -1.14
USP40-203ENST00000427112 NAXEQ8NCW5 288 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 FGF14Q92915 247 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 GIMAP5Q96F15 307 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 GON7Q9BXV9 100 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 CHST6Q9GZX3 395 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 ARL6Q9H0F7 186 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 MTHFD2LQ9H903 347 aaPredicted RBP7.95□□□□□ -1.14
USP40-203ENST00000427112 PELI2Q9HAT8 420 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 ADGRL4Q9HBW9 690 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 SLCO1B1Q9Y6L6 691 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 SPTBN2O15020 2390 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 MN1Q10571 1320 aaPredicted RBP7.95□□□□□ -1.14
USP40-203ENST00000427112 TRAV20A0A0B4J274 112 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 M0QYG6 137 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 STX11O75558 287 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 MTRF1O75570 445 aaKnown RBP7.95□□□□□ -1.14
USP40-203ENST00000427112 NFATC1O95644 943 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 HPGDP15428 266 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 HLA-DMAP28067 261 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 LCN1P31025 176 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 TLX1P31314 330 aaPredicted RBP7.95□□□□□ -1.14
USP40-203ENST00000427112 THBS2P35442 1172 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 ZP1P60852 638 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 LINC00303Q3SY05 128 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 AMZ1Q400G9 498 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 PLA1AQ53H76 456 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 TMEM69Q5SWH9 247 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 ZBTB37Q5TC79 503 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 ELP2Q6IA86 826 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 FIGLAQ6QHK4 219 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 PARM1Q6UWI2 310 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 DPY19L4Q7Z388 723 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 LRRC28Q86X40 367 aaPredicted RBP7.95□□□□□ -1.14
USP40-203ENST00000427112 PLPP7Q8NBV4 271 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 MED30Q96HR3 178 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 ADAD1Q96M93 576 aaKnown RBP7.95□□□□□ -1.14
USP40-203ENST00000427112 ZNF681Q96N22 645 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms