RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 TSPAN31Q12999 210 aa16.04■□□□□ 0.16
SHANK1-201ENST00000293441 FRMPD2BQ6IN97 320 aa16.04■□□□□ 0.16
SHANK1-201ENST00000293441 FNDC9Q8TBE3 224 aa16.04■□□□□ 0.16
SHANK1-201ENST00000293441 SSX3Q99909 188 aa16.04■□□□□ 0.16
SHANK1-201ENST00000293441 TRAPPC2LQ9UL33 140 aa16.04■□□□□ 0.16
SHANK1-201ENST00000293441 SDK1Q7Z5N4 2213 aa16.04■□□□□ 0.16
SHANK1-201ENST00000293441 CCDC163A0A0D9SF12 145 aa16.04■□□□□ 0.16
SHANK1-201ENST00000293441 TAPBPO15533 448 aa16.04■□□□□ 0.16
SHANK1-201ENST00000293441 MTCP1P56278 107 aa16.04■□□□□ 0.16
SHANK1-201ENST00000293441 RPS18P62269 152 aaKnown RBP16.04■□□□□ 0.16
SHANK1-201ENST00000293441 CSNK1G2P78368 415 aa16.04■□□□□ 0.16
SHANK1-201ENST00000293441 SEMA3BQ13214 749 aa16.04■□□□□ 0.16
SHANK1-201ENST00000293441 GAB1Q13480 694 aa16.04■□□□□ 0.16
SHANK1-201ENST00000293441 RNF113BQ8IZP6 322 aaKnown RBP16.04■□□□□ 0.16
SHANK1-201ENST00000293441 KHSRPQ92945 711 aaKnown RBP eCLIP16.04■□□□□ 0.16
SHANK1-201ENST00000293441 CMSS1Q9BQ75 279 aaKnown RBP16.04■□□□□ 0.16
SHANK1-201ENST00000293441 OR2B2Q9GZK3 357 aa16.04■□□□□ 0.16
SHANK1-201ENST00000293441 KIR3DX1Q9H7L2 352 aa16.04■□□□□ 0.16
SHANK1-201ENST00000293441 CXorf36Q9H7Y0 433 aa16.04■□□□□ 0.16
SHANK1-201ENST00000293441 EHFQ9NZC4 300 aa16.04■□□□□ 0.16
SHANK1-201ENST00000293441 NUBP2Q9Y5Y2 271 aa16.04■□□□□ 0.16
SHANK1-201ENST00000293441 MRPS14O60783 128 aaKnown RBP16.04■□□□□ 0.16
SHANK1-201ENST00000293441 LILRB5O75023 590 aa16.04■□□□□ 0.16
SHANK1-201ENST00000293441 BCAS1O75363 584 aaPredicted RBP16.04■□□□□ 0.16
SHANK1-201ENST00000293441 SPDEFO95238 335 aa16.04■□□□□ 0.16
SHANK1-201ENST00000293441 MT-ND4P03905 459 aa16.04■□□□□ 0.16
SHANK1-201ENST00000293441 ALDOBP05062 364 aa16.04■□□□□ 0.16
SHANK1-201ENST00000293441 MSI2Q96DH6 328 aaKnown RBP16.04■□□□□ 0.16
SHANK1-201ENST00000293441 NICN1Q9BSH3 213 aa16.04■□□□□ 0.16
SHANK1-201ENST00000293441 WASH6PQ9NQA3 447 aa16.04■□□□□ 0.16
SHANK1-201ENST00000293441 ASF1BQ9NVP2 202 aa16.04■□□□□ 0.16
SHANK1-201ENST00000293441 MMACHCQ9Y4U1 282 aa16.04■□□□□ 0.16
SHANK1-201ENST00000293441 TRAV36DV7A0A075B6V5 113 aa16.04■□□□□ 0.16
SHANK1-201ENST00000293441 ARPC5O15511 151 aa16.04■□□□□ 0.16
SHANK1-201ENST00000293441 PTPN6P29350 595 aa16.04■□□□□ 0.16
SHANK1-201ENST00000293441 CYB561P49447 251 aa16.04■□□□□ 0.16
SHANK1-201ENST00000293441 CAV3P56539 151 aa16.04■□□□□ 0.16
SHANK1-201ENST00000293441 C6orf15Q6UXA7 325 aaPredicted RBP16.04■□□□□ 0.16
SHANK1-201ENST00000293441 OR1J2Q8NGS2 313 aa16.04■□□□□ 0.16
SHANK1-201ENST00000293441 ENPP5Q9UJA9 477 aa16.04■□□□□ 0.16
SHANK1-201ENST00000293441 ZNF281Q9Y2X9 895 aa16.04■□□□□ 0.16
SHANK1-201ENST00000293441 H3BMQ9 156 aa16.04■□□□□ 0.16
SHANK1-201ENST00000293441 T-ENOLP0DO92 83 aa16.04■□□□□ 0.16
SHANK1-201ENST00000293441 MTHFD2P13995 350 aa16.04■□□□□ 0.16
SHANK1-201ENST00000293441 PKLRP30613 574 aa16.04■□□□□ 0.16
SHANK1-201ENST00000293441 IKZF1Q13422 519 aa16.04■□□□□ 0.16
SHANK1-201ENST00000293441 ESPNLQ6ZVH7 1005 aa16.04■□□□□ 0.16
SHANK1-201ENST00000293441 RNF128Q8TEB7 428 aa16.04■□□□□ 0.16
SHANK1-201ENST00000293441 DUSP13Q9UII6 198 aa16.04■□□□□ 0.16
SHANK1-201ENST00000293441 CACNA1SQ13698 1873 aa16.03■□□□□ 0.16
SHANK1-201ENST00000293441 HOXC11O43248 304 aaPredicted RBP16.03■□□□□ 0.16
SHANK1-201ENST00000293441 TP53P04637 393 aaPredicted RBP16.03■□□□□ 0.16
SHANK1-201ENST00000293441 BDKRB2P30411 391 aa16.03■□□□□ 0.16
SHANK1-201ENST00000293441 DLSTP36957 453 aa16.03■□□□□ 0.16
SHANK1-201ENST00000293441 OR8B8Q15620 311 aa16.03■□□□□ 0.16
SHANK1-201ENST00000293441 COX20Q5RI15 118 aa16.03■□□□□ 0.16
SHANK1-201ENST00000293441 SPARTQ8N0X7 666 aa16.03■□□□□ 0.16
SHANK1-201ENST00000293441 UBXN10Q96LJ8 280 aa16.03■□□□□ 0.16
SHANK1-201ENST00000293441 ASB4Q9Y574 426 aa16.03■□□□□ 0.16
SHANK1-201ENST00000293441 TMEM72A0PK05 275 aa16.03■□□□□ 0.16
SHANK1-201ENST00000293441 ZNF587BE7ETH6 402 aa16.03■□□□□ 0.16
SHANK1-201ENST00000293441 CYB5BO43169 146 aa16.03■□□□□ 0.16
SHANK1-201ENST00000293441 SLCO2B1O94956 709 aa16.03■□□□□ 0.16
SHANK1-201ENST00000293441 OPRL1P41146 370 aa16.03■□□□□ 0.16
SHANK1-201ENST00000293441 RRAS2P62070 204 aaPredicted RBP16.03■□□□□ 0.16
SHANK1-201ENST00000293441 RPL23AP62750 156 aaKnown RBP16.03■□□□□ 0.16
SHANK1-201ENST00000293441 SF3A2Q15428 464 aaKnown RBP16.03■□□□□ 0.16
SHANK1-201ENST00000293441 KRBOX4Q5JUW0 171 aa16.03■□□□□ 0.16
SHANK1-201ENST00000293441 FAM198BQ6UWH4 519 aa16.03■□□□□ 0.16
SHANK1-201ENST00000293441 GDPGP1Q6ZNW5 385 aa16.03■□□□□ 0.16
SHANK1-201ENST00000293441 PDZD9Q8IXQ8 264 aa16.03■□□□□ 0.16
SHANK1-201ENST00000293441 AP1S3Q96PC3 154 aa16.03■□□□□ 0.16
SHANK1-201ENST00000293441 MAST2Q6P0Q8 1798 aa16.03■□□□□ 0.16
SHANK1-201ENST00000293441 TCRBV3S1A0A5B6 114 aa16.03■□□□□ 0.16
SHANK1-201ENST00000293441 HMGA1P17096 107 aaKnown RBP16.03■□□□□ 0.16
SHANK1-201ENST00000293441 ESCO2Q56NI9 601 aa16.03■□□□□ 0.16
SHANK1-201ENST00000293441 KANSL1Q7Z3B3 1105 aa16.03■□□□□ 0.16
SHANK1-201ENST00000293441 OR6F1Q8NGZ6 308 aa16.03■□□□□ 0.16
SHANK1-201ENST00000293441 PRRT1Q99946 306 aa16.03■□□□□ 0.16
SHANK1-201ENST00000293441 PRMT8Q9NR22 394 aaPredicted RBP16.03■□□□□ 0.16
SHANK1-201ENST00000293441 NPSR1Q6W5P4 371 aa16.03■□□□□ 0.16
SHANK1-201ENST00000293441 PIWIL3Q7Z3Z3 882 aaKnown RBP16.03■□□□□ 0.16
SHANK1-201ENST00000293441 DNAJC22Q8N4W6 341 aa16.03■□□□□ 0.16
SHANK1-201ENST00000293441 TEX19Q8NA77 164 aa16.03■□□□□ 0.16
SHANK1-201ENST00000293441 ABHD11Q8NFV4 315 aa16.03■□□□□ 0.16
SHANK1-201ENST00000293441 FOXQ1Q9C009 403 aa16.03■□□□□ 0.16
SHANK1-201ENST00000293441 BET1O15155 118 aa16.03■□□□□ 0.16
SHANK1-201ENST00000293441 OR7C1O76099 320 aaPredicted RBP16.03■□□□□ 0.16
SHANK1-201ENST00000293441 PFN3P60673 137 aa16.03■□□□□ 0.16
SHANK1-201ENST00000293441 IL13RA1P78552 427 aa16.03■□□□□ 0.16
SHANK1-201ENST00000293441 GPLD1P80108 840 aa16.03■□□□□ 0.16
SHANK1-201ENST00000293441 MEF2DQ14814 521 aa16.03■□□□□ 0.16
SHANK1-201ENST00000293441 Q6ZPB1 254 aaPredicted RBP16.03■□□□□ 0.16
SHANK1-201ENST00000293441 MBOAT2Q6ZWT7 520 aa16.03■□□□□ 0.16
SHANK1-201ENST00000293441 BRIX1Q8TDN6 353 aaKnown RBP16.03■□□□□ 0.16
SHANK1-201ENST00000293441 SLC35E2P0CK97 266 aa16.02■□□□□ 0.16
SHANK1-201ENST00000293441 NKX2-5P52952 324 aaPredicted RBP16.02■□□□□ 0.16
SHANK1-201ENST00000293441 CXADRP78310 365 aa16.02■□□□□ 0.16
SHANK1-201ENST00000293441 EXT1Q16394 746 aa16.02■□□□□ 0.16
SHANK1-201ENST00000293441 MPEG1Q2M385 716 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 128 ms